Array 1 34028-35255 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLOD01000044.1 Pseudomonas aeruginosa strain UFJ4 NODE_44_length_46362_cov_28.718164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34028 28 100.0 32 ............................ AGCGGGCGGTGGGCGGCATGAAGAAAACACCC 34088 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 34148 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 34208 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 34268 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 34328 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 34388 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 34448 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 34508 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 34568 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 34628 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 34688 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 34748 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 34808 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 34868 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 34928 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 34988 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 35048 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 35108 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 35168 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 35228 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 45308-43780 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLOD01000044.1 Pseudomonas aeruginosa strain UFJ4 NODE_44_length_46362_cov_28.718164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 45307 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 45247 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 45187 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 45127 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 45067 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 45007 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 44947 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 44887 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 44827 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 44767 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 44707 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 44647 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 44587 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 44527 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 44467 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 44407 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 44347 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 44287 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 44227 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 44167 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 44107 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 44047 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 43987 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 43927 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 43867 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 43807 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //