Array 1 23384-22887 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMZU01000026.1 Neisseria meningitidis strain NM2932, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23383 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23317 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 23252 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 23186 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 23120 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 23054 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 22988 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 22922 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTTCTTTTTGTAATTGTTCTGCCTTTTTTAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTCCGCAACCCGACACATCCGTCATCAACAGATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTTAACATCGTGTATTGGGTTATTATTTGAAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTCCGCAACCCGACACATCCGTCATCAACGGATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTNA # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 23387-23620 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMZU01000026.1 Neisseria meningitidis strain NM2932, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23387 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23453 36 100.0 30 .................................... TTCAAATAATAACCCAATACACGATGTTAA 23519 36 100.0 30 .................................... CTGTTGATGACGGATGTGTCGGGTTGCGGA 23585 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACAAATGTTCAAGCCGGATGAAAACGGCATAAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTGCTTTCGGGTTTTTCCGTCAATGTCGGGAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACAAAAATCGAAATAACAAAATGGTTGTTATTATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACATAGGATACAAACTGGTTTGCGGTTTTAAAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACCAAAAGGCTGAAAACAATAACAGGCATAGGATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACCGTCGATATGGCAGAAATAAAGCGGCCGAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTCCGCAACCCGACACATCCGTCATCAACGGATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTNA # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTAAAAAAGGCAGAACAATTACAAAAAGAAAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTCCGCAACCCGACACATCCGTCATCAACGGATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACAAAAATCGAAATAACAAAATGGTTGTTATTATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTGGACATCTCAAAGGACACCATAGACGCAAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACGTTTTGTGGCAATGGTTTCCGCCGTGGGTAATTGTAG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 3 24610-23783 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMZU01000026.1 Neisseria meningitidis strain NM2932, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24609 36 94.4 30 ........G...A....................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 24543 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 24477 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 24411 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 24345 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 24279 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 24214 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 24148 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 24082 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 24016 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 23950 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23884 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 23818 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTCCGCAACCCGACACATCCGTCATCAACAGATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTTAACATCGTGTATTGGGTTATTATTTGAAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTCCGCAACCCGACACATCCGTCATCAACGGATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTNAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCCGTTGATGACGGATGTGTCGGGTTGCGGAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA //