Array 1 90892-89338 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAJC01000004.1 Allosalinactinospora lopnorensis strain CA15-2 contig00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90891 29 100.0 32 ............................. CGGACACGGTCAACCCCCCGCCCCCCGAAACC 90830 29 100.0 32 ............................. TCGGGGTGTTGGTCGGCGAACCATGCGGCGAT 90769 29 100.0 32 ............................. CGGCCCGGGGCGACCATCGCTGAGGCGGTCGC 90708 29 100.0 32 ............................. CTGTCCCGCGGCCAACGCGGCAGCGGGGGCGG 90647 29 100.0 32 ............................. GAGGCGCGCATGCGGCAGCGCGAGATCGAGCG 90586 29 100.0 32 ............................. CCGTCGGGTAGGCCGGGGTTGTCGTCGAGGGT 90525 29 100.0 32 ............................. GTCAACTTCGCGATCCCCAGTGAGCCCGCCGA 90464 29 100.0 32 ............................. GCTGCTGTCTGAGCTCGGGGTTGACCCGCGCA 90403 29 100.0 32 ............................. GAAGAGAGAGGACACAGGGCCAGATGACGAAT 90342 29 100.0 32 ............................. GACCTTCAGCCGCTCGCGCGCGGACTTGCGCC 90281 29 100.0 32 ............................. GACAGGCCGAGGTCCTGCGCTATGGCGGTGAC 90220 29 100.0 32 ............................. CCGTCGGGTAGGCCGGGGTTGTCGTCGAGGGT 90159 29 100.0 32 ............................. CGGACACGGTCAACCCCCCGCCCCCCGAAACC 90098 29 100.0 32 ............................. TCGGGGTGTTGGTCGGCGAACCATGCGGCGAT 90037 29 100.0 32 ............................. CAGTGGACCGGGAGGCACGCCAGCCTCCTGCG 89976 29 100.0 32 ............................. CAGCCGAGGGGGTGACCCGGTGCCGCTCCCCA 89915 29 100.0 32 ............................. GTGATGCTGCAGGACCAGGGCGCCGGGAAGGG 89854 29 100.0 32 ............................. GAGGGGGGAGGGGAAACCCTCACAGACCTAAT 89793 29 100.0 32 ............................. GGGCCCCCGGCAGCCGTGACAACTGGGTAGAG 89732 29 100.0 32 ............................. ATGGCCGCCGTCTACTCCGACCACCCGGATTA 89671 29 100.0 32 ............................. CACCTGGCGGCGCACCTGCGTGATGCCGACCG 89610 29 100.0 32 ............................. GAACCACCTTCGCTACGGCGCCTCAACGCTGG 89549 29 100.0 32 ............................. GCCTGCTCCAGCCGCCCGTCTTCCTGCGCGAA 89488 29 100.0 32 ............................. GGGAGGGACTGCCTAAGGGGGGCCCGTCCGCC 89427 29 100.0 32 ............................. CCCTGACCGTCTCGGTCGATGCCGAGATGCTG 89366 29 82.8 0 .................C.......GATT | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.3 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GGTTCGGATGGCGAATCGGATGCCCCCTGGGAAGTGATCTGGTGACAGTTATCGTGCTCACCCTCTGCCCGCCAGGGCTGCGCGGATTCCTCACCCGGTGGCTGCTGGAGATCTCCTCCGGAGTGTTCATCGGTAATCCCTCGGCTCGTATCCGTGAGGCACTGTGGGCGGAGGTGCGGGAGTACGCGGGCAACGGCCGCGCTCTCCTCGTCTACACCACCAACAACGAGCAGGGGTACACCTTCGAGACCTTCGAACACAAATGGGTTCCGGTGGACCATGAAGGATTGACACTCATCCACCGTCCGTACCAGCAGCGGCCGGAGGCAGCGACAGCGAAGCAGAAAGGCTGGAGCAAGGCGGCCAAGCGCCGTCGCTATGGAAGGAAGTGAAGTAAGGTGCGCGAAGTCGTGGTTCGCGAGTTTTGTGGGGTTATGCGCGAATTTCGGGAAGTGGTAAATATGGGCCTGGTCCCGGGGTAGAAGTGCAGGTCACGGAGT # Right flank : TGGCCGATGATGGGACGCATCCGTTGCGGGGTTTGGGTCCGCGGGGAAGGGCGGGTGTGCCGGATCTGTCCACGTTCGCTCCTCGCGGCGGGGCCCTACGACCGGGGGCCGGGTACGGGAAAAACGCGGTGGAGCCCAAGGGCCCGCACCGCGCTTGTCAAGCTTGTCGGCCCCCGGTCTCCCGCCGCGATGCGCTCTGCGTGACCAGATCCGTCCACCCTCACCACCGCTCATGGCGCGCAAAGAGGATGCGGTCGTCGGCGTGGTCCGGTTTGTGGGGTCCTCACCGCCGATCTTGACGATTTCGTTCCTTCATGCGCGCTAAAGGAACAAAATCGTCAAGATCGGCGGGAAATAGTTCTTTTGGGACGGTGGCTATGAAAAGATCTCCCCTCCGTGTGGAGAGGAGGCCGCAGCCTGGGCGGGTGCTTACGTGCGGTCGGCTTTCACGTTCCGCAGGAAGGCGGTCCACGCCTCGATGGGGAAGCTCAGGTGTCCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 101698-100327 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAJC01000004.1 Allosalinactinospora lopnorensis strain CA15-2 contig00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101697 29 100.0 32 ............................. CCCACGACCCCATGGCATCATGACGCCATGAA 101636 29 100.0 32 ............................. GGGACGTGCGCCCGGGTCGGCTTCGGCTTGCT 101575 29 100.0 32 ............................. AGCTGATGACCAGCGATAACGAGACATACGGG 101514 29 100.0 32 ............................. GCGGTGGCCGGCGACTACGCCCACATCGTGAT 101453 29 100.0 32 ............................. CGGCCGGGCCGGTCCTGGTCGGGGGCGGGCAT 101392 29 100.0 32 ............................. CGGAGCAGCATGGCCAGCTTGGGGGTTTGTAG 101331 29 100.0 32 ............................. CCTTTATGAGCTGTCGATCGGTGCGCTCGGCG 101270 29 100.0 32 ............................. AGTGCCCGCTGTGCGCCCCGTGGGAGGGGAAA 101209 29 100.0 32 ............................. GAGATCGCAGCCGGCGCCATTCGCGCCCTGGC 101148 29 100.0 32 ............................. CGCCGGAAGTTCGCCAGGTACGGCCGGAGCTC 101087 29 100.0 32 ............................. AAGAAGGTCCGCGACCTGGACAACGTGCTCTC 101026 29 100.0 32 ............................. ACCGCAATTGATGGCGGCGGCGGATTCCGCTG 100965 29 100.0 32 ............................. AGACTGCCGCCGGGCACGGTGACGCGTAGGCA 100904 29 100.0 32 ............................. CCGCCGTACTGGGACACCGAGGTCGATGAGTG 100843 29 100.0 32 ............................. CCGAAACCGTGGGTTTACCAGCAGTTTTGGTT 100782 29 96.6 32 ..............T.............. ATCGGCTGGAACTCCCGCCGCTGAAGCTCATT 100721 29 100.0 32 ............................. GTGCTCGTGGTGATTCCCTGCCCCGCGAAAAC 100660 29 100.0 32 ............................. CGAGAAGCGCGAGCTGCTCCCCCACTGCACGA 100599 29 100.0 32 ............................. GCCGCACCACTCCGGCGGCGATAGCCCCATAC 100538 29 100.0 32 ............................. TGCCCCATGGCACGGCATCGTGTTCTCCACCG 100477 29 100.0 32 ............................. CGGGCCGTGCTCGTGAAGGGGGCCGACGTTGT 100416 29 100.0 32 ............................. ACCACCTGGTATTCAATTCAGATGATGGTGGG 100355 29 93.1 0 .................C........T.. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGAGATGCGCGGAACACACTGGCCCGCACTGTCATCAAGGTGGGCATCAGGGTCAGCGCATGCGCCGGGCCGTGGCGCAAGTAGATGAGATTTCATTGCCCGGTGGTTGCTGGAGATCTCTCCGGGGGTGTTCATTGGTAACCCTTCGGCTCGTATCCGTGAGGCATTGTGGGCGGAGGTGCGGGAGTATGCGGGTAATGGTCGCGCTCTTCTCGCCTACACCACCAACAACGAGCAGGGGTATACCTTCGAGACCTTCAAACATCAATGGGTTCCGGTGGATCATGAAGGGCTGATGCTTATCCACCGTCCGCACCAGCAGCGGCCGGAGGTGGCGCCGGCGAAGCAGAAGGGGTGGAATAAGGCGGCCAAACGCCGCCGCTATGGGAGGAAGTAAGGTGCGTGAAGTCCTGGTCTGCGAGCTTTATGGGTTTACGTACGAATCTCGGGAAGTGGTAAATACGGGCCTGCTCCTGGGGTAGAAGTGCAGGTCACGGAGT # Right flank : GTGGCTGGTGAGGCCCACCAAGCGGCTATGGGTGTCCCCATATGCGCGGGACACCCATAGCCGCATATAGCCGCATCCGGACAGGCAAATCGCAGCATTCGCCTGACTTCACCCTTGTACTCCGATTGACTTTCCGTCATGACTACCCCCAGCGCCCTCCACTGCGCTCTTGCGGGACTCACGGAGAGAGCCCGCTCCGCCTGGGCCAAGTCCAGTCGTGAAGACGAAGACGATGCCTGGCTGCCGCTGTGGTGCCACATGGCGGATAGCGCCGAGATCGCGGGACGGCTGTGGGACCACTGGCTGCCGCGTAAGGTCCGTCACCTCATCGCGGACGCCTTTCCCTGTGGCGCGGACGACGCCCGGGTACTCGCGGTGTGGCTGGCGGCCGTCCACGACATCGGGAAGGCGACCCCCGCGTTCGCGTGCCAAGTGGGCCGACTAACGGGCAGGATGCGCGACCACGGGCTGGAGATGCGGACCTACAGGGAACTGGGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8024-9396 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAJC01000084.1 Allosalinactinospora lopnorensis strain CA15-2 contig00084, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8024 29 100.0 32 ............................. ACCGGGTGCCTGAAGCTGGTGTTGCCGGTGAT 8085 29 100.0 32 ............................. AACTCCGCCACCACTGAGGCCGACATCCTGGC 8146 29 100.0 32 ............................. GGCGCGGAAAACCGGTGTACCCGGCCACACCA 8207 29 96.6 32 ............................T CGTCACGATTACTGACCAGGTAGGAACACCAT 8268 29 100.0 32 ............................. GTGTGGGTGCCCGTGTCGTCGCCGCTGCGCAG 8329 29 100.0 32 ............................. GGCGGCTCGACCGCCCCCGCATCTGAGGAGTT 8390 29 100.0 32 ............................. CCCGCCGAACTCGCGCGCGCCGCGCTGGCGAC 8451 29 100.0 32 ............................. GAGCTCGGCCAACCAGTCTCCGGGTTCCGCCG 8512 29 100.0 32 ............................. CCGGCCGAGTGCGGGGTTTCCAGGTCGGTCAG 8573 29 100.0 32 ............................. GCCACGGAAGGCTCCTCGGGTCATCCCCGGGA 8634 29 100.0 32 ............................. GCGCCCGCCACACCTGGCTGAACGGAACGAAA 8695 29 100.0 32 ............................. TCCGGGCTCACCGAGCCGACACAGGCGCAGAT 8756 29 100.0 32 ............................. GTGCCCTCGAACAGCTCCGTCAGGGCGGCCAG 8817 29 100.0 32 ............................. CCGTGCGCGTTCTCCTCGCACGGGCCCAGCCC 8878 29 100.0 32 ............................. ACCGTTTACGGCTGTGGGCAAGAATGGATTCT 8939 29 100.0 32 ............................. GGGCCCCACGAACAGGGCACCCCCGGCCAAGG 9000 29 100.0 32 ............................. CGGCGCTGGCGGCTGCACTCCTACGTCGAGAT 9061 29 96.6 32 ............................T CGGACAGGACGACCTCGACCAGGTGGACGCCT 9122 29 100.0 32 ............................. AACGCCTGGCCCTGTAAGGGCCGCATGGCGCC 9183 29 100.0 32 ............................. GGCGAGAACGCCTCGACGACGGGCGTGACCGC 9244 29 100.0 32 ............................. CTCATTTTCATCATGGAGGATTCCAGCGGTGA 9305 29 100.0 33 ............................. ATCCGCATGTACGCCGCGACGGTCGCCAGGCTG 9367 29 93.1 0 ......................G..G... | C [9389] ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.4 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CAAGGGTTCCAACGGTTCCACACCGACAGAGGGCTACCCAGTAAGGCGCGTGCCGCACCCCCCGGATGGGGAGCCCCCCACCTCACCCCATGGAACCCTTGGAACCGCTGGAACCCACTACATAGAGTCACACACCTAGGGGGAGGGATAGCGGGATGGGAGAGGGGGTCACCACCTGTCTAGGGTCGCTTTTTGAGGGTTCTCGCAGATGGTCGCTAGTGCGCTAACTCCCAGGTGATCACTGGATCGGGGCGCTAGCGGGATCGCTAGCGCTAGCGAGAGGCCCCGCTAGCGCTAGCGGGCGCGTTACCGTCTTCAGGCACCGCTTTTCGTCACTTTCGGTGAATATTGCACGGTCGTCCCGAGGGCGGCGCCGTGGTGTAGCGTCCTTGCAGCGTGGTCTGCGTTTTGGATGGATGGCTGATTTGTCTGTTATGCCGCTTTCTCGGGAAGTTGCATATTTGGCAATGGTGGCGCGGTAGCATTGCAGGTCACGGAGT # Right flank : CACGCGCACCCCGGCCACCAACCGGCAAGCGTGTGGCCATCCATTCGGGGGTACGGCTTGGTGGTTCCCCACCCCCACTACCGTTACCGCGACCACGGTGACGACCACCGCCGCTTGAGCTTCGACCGTTCCGGATGACTCGCTCAGATGGCCACTGTGCGCCGTTCTCGGCGCGCTGAAGGGGGAAATGGGTCTACGCGAAAGTGATCTTGCCACAGGGCATTTCAGTGCTTCCGCTGTCCCGCTGCCGTACCCCAGCAGAGTACGGCAACCGCTAGAAACCGGGGTGAACTCTCGCGAACGCATCTGGAGAAGAAGCGCACTTCGGAACCTGATTTTCGATCGTGCGTTCCCTGTATCCGGTGCTTCGCATCGAGAGGGTCAGGGGTTCAAATCCCCTCAGCTCCACAGGGAAAAGGCCGGTTTCCGGGTGGAAACCGGCCTTTGTACTGTTCACGGGGTCGGTCGGCGTCCGATCACGCCGGTTCGGCTCGCTGCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12977-10444 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAJC01000007.1 Allosalinactinospora lopnorensis strain CA15-2 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12976 29 100.0 32 ............................. AAGGAAATCGCCGCCCCGGAGTGGAACCAAAC 12915 29 100.0 32 ............................. GCACCCCTTTTGCGAAGCGCCGACGTCGTGGG 12854 29 100.0 32 ............................. GAAAAGGCGAGGAGTGGCCGCACGCCTCCTTC 12793 29 100.0 32 ............................. CCAACCGGGGGTTCCTCAAAGGGTGGTGGTAT 12732 29 96.6 33 ............................T CCGCTGCTCGGCTGCACCTCACCGGCCAGCAGG 12670 29 100.0 32 ............................. CCCGTGACCGCCTTGAAGTGGCGTAAAGGCCA 12609 29 96.6 32 ............................G GTCATGGGCCGGCTCGGGGCGACAGTGAACAC 12548 29 100.0 32 ............................. GTGGACCGGAAGGGCCCGCTGGGGAATCCATC 12487 29 100.0 32 ............................. GCCTGCGACCACGGCCACGCACCACCGGACTC 12426 29 100.0 32 ............................. ATCTCGCGCAGCCGCTGCAGGTCGTGGTGCGG 12365 29 100.0 32 ............................. CAGCGGCACCACCAGGGCGCCCACCGGGCGCA 12304 29 100.0 32 ............................. TGGCCTCATGACCATCGTGGAGTTCCTGGAAG 12243 29 100.0 32 ............................. AAATGGTCGTAATCCATGGGATCCAGTTCACT 12182 29 100.0 32 ............................. ATGGGCGAGCCATCGTGTGACGGTCAAGAGGA 12121 29 100.0 32 ............................. TTCACTGGAGGTGCCGCTATAGGGGCGACCAT 12060 29 100.0 32 ............................. AAGGTCGCTGACCGGGTGCCCGGGATCGGGCG 11999 29 100.0 32 ............................. ACGCTGAACTGCCGGGTGTTCGTCAAGCAGTC 11938 29 100.0 33 ............................. TTCGATGGTGAGTACTTCGCTGACCTGGCCAAA 11876 29 100.0 32 ............................. ACGATCGTGCCGTTGGGGTACTCGGTGCCGCG 11815 29 100.0 32 ............................. GCGCGCACCTACCCGATCTCGCTGCAATCCCT 11754 29 100.0 32 ............................. GATATACGTCTCGCCGGTGGGGACCTCCCGGG 11693 29 100.0 32 ............................. CTCCTACCGGCGCAGCGAGAACGCGCGTACCT 11632 29 100.0 32 ............................. GTCATTGAGGACGTGGCCGGCGACAACGGCAT 11571 29 100.0 33 ............................. CAATCCCCCGACACCGCGGTGACGGCGAGGGTG 11509 29 96.6 33 ............................T TCACCGGCGGCGATCATCCGGTAGATGGTGCGG 11447 29 100.0 32 ............................. GGACCCCCCTTTGAGACCCCTTCCCGCTCGGC 11386 29 100.0 32 ............................. GTGGACGTGCTGGAGCTGCCGCTGGAGATCCG 11325 29 100.0 32 ............................. GACGTGTGGATCTCGCTGCAGGCGTCCGGGCC 11264 29 100.0 32 ............................. CTCGCCGAGGTGTTGAAGGCGGCGACCTACGA 11203 29 100.0 32 ............................. GCCTCGACATCGCTATCTCCGAAGCGTTCGAG 11142 29 100.0 32 ............................. GCCACCATCTCCTGGACGGTGGCATTCGCCTC 11081 29 96.6 32 ............................A GAAAGGGGCCCTGGGCCACCCCGCCCAGGACC 11020 29 100.0 33 ............................. CCCGCGGCGACGGCGTACCCGGCGATCTGTCCG 10958 29 100.0 32 ............................. ACGGCTGGGGTAAGCGGGTACCGGCGCGTGCC 10897 29 100.0 32 ............................. TCCTACTCCTACGAGCTCACCCCGCCGGAGGT 10836 29 96.6 32 ......T...................... CCGCGACCTCTCGCTTATAAGGCGAAGTATCC 10775 29 96.6 33 ............................A CAACTTCATCGGGCGTGCCCGAAGTGCAGGCGA 10713 29 100.0 32 ............................. CGGATCTCGCGGCCATCGCGCAGGGCGCCGAG 10652 29 100.0 29 ............................. GATCCGTCGTCGTCCTTCTTGAGGTAGCC 10594 29 100.0 33 ............................. ACCACTCATTCCGACAACGTGGTCGGCCGTGCG 10532 29 100.0 32 ............................. AACGGCTACGACCTCGATGTCGCCTACGACCT 10471 28 79.3 0 .A.TG.....T.C........-....... | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.0 32 GTGCTCCCCGCCTACGCGGGGGTGAGTCC # Left flank : TGCGCCTGATCCCGCGAATGGTCTCCGATATCTACCAGGTGCTGGATCTGCCCAGCTCGGATAGTCCAGGCCCCCCAGACGTGATCAACCTCTGGGATCCCGACGGGGAACTGCCATCGGGCGTCAACTACGCCACGGAGGCAGACCGGTAATGGCTGGCGGATTCTGTGTCATCTCCACGACCGCGATCGCCGATGGCACGCGCGGCGCGTTGACCCGCTGGATGCTGGAGCCGGCGCCCGGAGTTTATGTGGGCACCCTGACCAGAAGGGTGCGCGAGCACCTGTGGGCGGGCCTGCGAGAAGCCATCGACGCTCAGGAGGGCTGGGCGGTCATGGTGCATGGCGCCGACACCGAGCAGGGCTACCGCGTACTGACGTACGGCGAGGGCAGCCGCACTCCCCGGACGATCGATGGTCTGACGTTGATCGGCTGGCCGAAGGAGACACTAGAAGAGGTCAAAAATCTATAACGTGCCGCATTGGCGCTGATCGCGAAGG # Right flank : GACGCCAGCCTGGGCCCATCGGGGCGGCTCGGTTCCGCCTACCCTGTCGACGAGTACGTTCACGTCCAGGCTCTCGGCTGCCACCTGCTCATCCTCGTCCAGCCGCGCTCTTAGAAACTCCACGATCTCACCCGCGCTCAGCCCGGGCCTCCCCGTCGGCGTCGACGATCTCTTTGATCTTGCGCAACCTCTCCCGTGCATCCCACGCCGCTTTCTCAGCCGCCGCAGCATGGATTAGCACCTCGTCGCCCTCTTCGTCCGGGAACAGGACCGCATCGATCATCCCTCCGATCAGGGTCTCGCGCAGGTAAAGCCGGACCTCGGCATCCTGGTACCTTGGAAGGTCGGCAGGTACGTGCCCAATGCCATGCTTGTAGAGCGAATCCGCAATTTTCTCGCACACGAGCCTCTTGAGGCGCTGCTTCCCGGTCAGGTCACGCAGATGCACCATTTCGGTGACGCCGTAGCCGCCGCGGTCGGCCACGATGGCGCGCAGTTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCTACGCGGGGGTGAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCTACGCGGGGGTGAGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22513-24435 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAJC01000007.1 Allosalinactinospora lopnorensis strain CA15-2 contig00007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22513 29 100.0 32 ............................. TGCGGGGCGTCCCCTCTCTGACCGGCTGTGAC 22574 29 100.0 32 ............................. CTGCGCCACCACAGTCCCGCGCCGGCTCAACA 22635 29 100.0 32 ............................. CCCCACCCGGCCTCGACGAGGACGGGGACGGC 22696 29 100.0 32 ............................. AGTCCTTCTTCTTCGAGCTTGAGCGCGGCTTT 22757 29 100.0 32 ............................. ATCACCATCGAATCCGACCTCGCCGAAGACAC 22818 29 100.0 32 ............................. CCCCCGTCGAGAGGACCACCCCCCGTGGCGTA 22879 29 100.0 32 ............................. GTGATGCTGCAGGACCAGGGCGCCGGGAAGGG 22940 29 100.0 32 ............................. GCGGTCGGCCTCAGTCCACCCGCCGGGGGGTT 23001 29 100.0 32 ............................. TTGCGGGCAGACAGGGTGACGATGTCGTTGGC 23062 29 100.0 32 ............................. GACTGGAAACCGCCCCGGTGGCTGCCGCGCCG 23123 29 100.0 32 ............................. AGACACGCCCCGGTGCAACGGGACCGAGCAGC 23184 29 100.0 32 ............................. ATGCCCCGGAACATGCCCGCGACCGGGGCAGA 23245 29 100.0 32 ............................. GCGCGCACCACCTTGCAACGATGCGGTCGCAT 23306 29 100.0 32 ............................. GTCGGGGACGGTCAGCGCGAGCAGGATAGCCA 23367 29 100.0 32 ............................. GAGCTTCTGACGCTTCCCTCCTGCGACGCCTG 23428 29 100.0 32 ............................. GGCGCCGAGATGTGGGACTGGGCGTAGTCCAG 23489 29 96.6 32 ............................G AACGGCACCGCGCAGGACGGCCCGACCACCGC 23550 29 100.0 32 ............................. ACGTGCTGCAGGCAGGGCCCTACGGGGCGGTG 23611 29 96.6 33 ............................A CATGGCCCTCAGGTAGTGCTCGGACCCGGCCAC 23673 29 100.0 32 ............................. TGGGCCAGGCCCAGGCCGAGGCCGAGCGGGTC 23734 29 100.0 33 ............................. GGTTATATGCCTGTGACCTGATCATTCCTCCGA 23796 29 100.0 32 ............................. TGCACTCTCACCCGGTGCGGCCCCTCGACGAC 23857 29 100.0 32 ............................. GCAGGTATCTCTACGAGCCCCACGCCCCCGCG 23918 29 100.0 32 ............................. TCCGACAGATGCCCGCAAGATCGGAGCCCGCA 23979 29 100.0 32 ............................. CCGGATTCGAGCACCTGCACCTGTACCGCGAC 24040 29 96.6 33 ............................T GGAGAGTGGACCCCTACCTCACCACGACCGGGC 24102 29 100.0 32 ............................. ACCTTGTCTTTCCAGAAGTTCAGCGCGCCGCT 24163 29 100.0 32 ............................. CCCATGGACACCGCCACCCCGCATGACCTGGC 24224 29 100.0 32 ............................. ACGTACTGGCACGTCCACCACGCCTCGTTGCT 24285 29 100.0 32 ............................. GTTCCTCGCTGGCGATTCACGAGCGGGGTGTC 24346 29 96.6 32 .............A............... GCGCCCGACAGTCCGGCATGAGCGGACCACGG 24407 29 96.6 0 ..........................C.. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.5 32 GAACTCCCCGCCTGCGCGGGGGTGAGTCC # Left flank : TACCAAGATCCCGAGCGGCGAAACCAGTGGTCGCTTTCCCCAGGTCATGAAGAGCCGCAAGCAACGCCAAGCACGTAGCACCGTCAGCCCCCAGCCCACGCAATGCAGCACGCGGAAGAACCGGAGAATCGAACGCCTCAAGCGCAAGGATGCAACCGGCCGAGTCAAGCAGATGCGCGATCAGCGGATAGGCACCGTTGGGCAACCGCTCCGCAGATTTTCCCCACACCCAGCCAATATCCACCGGGCGCTCCCTTGACCCAGATCCCGCAGAGGAAGGCCCTGGACGGGAGGCAGGCGGAAGACGGCGGTAGCTCATGGGACTAGTCTGAAGAGCGGCATGGATGACCTCGCATGTTTCACGAACAATGGCCGGTTTAGGCCACAAGTCGAAAACTGCTGCAGTTCCGGGCGCTTCAATCCGGAGGCAACCATCCCCAATGAGCAGCAAGCAAAGGTTAACTTTCAATAACACGCCACGTTTTTGCAGCTGAGAAAGG # Right flank : CCTGCGGGTCAATGGGTCGGGTCTGCTCGGGTTTCGATGAGCGTTTCGGTCATAACCTTCTCCGCTCATCCCGCGTTGCACGCGGGCTTCGTGCGCACATCCACGTTGAGCACATACACACTGGGTAGAACCGACCAGTTGCCCCATCCTCGATTCCGGGACGGTAACGTACGGCGGTTCTACGAAACCCGCGTCGCCGGGGTGCTGTCGATGCCGCACATGCGTGCGTGCAACAGGCTGGCCTGGGGAGTCGGGCAGTCCAGATGAGGTCGGATACACCAATGCTTGCCGACGAAGGTGACTCCGCCGGGCGTGAACGCCAGGGCCGCCAGCCCGCGCGCCAGCATGGTGTAGGCCGCGGCGCAGTGACGGCCTCCATAGAGCAGGTCATCGCCGTGTTCGGCTACCCAGGCGGCGCTTTGGCCGGCCAACTCCCTTCGCTCGTGGTCGGTAAGGCCGGCGATCTTTCGCATTGCGATGGGAACGGCCATGTGCAGGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAACTCCCCGCCTGCGCGGGGGTGAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCTACGCGGGGGTGAGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //