Array 1 25221-30718 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWNE01000011.1 Acidiluteibacter ferrifornacis strain S-15 scaffold11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================= ======================================================================== ================== 25221 45 88.9 21 ......................................CAG.T.T AGAAAAGCAAACCAAAGCTTT 25287 45 88.9 21 ....................................CA..AGG.. GATGAAGAGCGCAGAAGCATT 25353 45 88.9 21 .....................................AA...GGT TAGCCTCGTTCACAAAGGCCT 25419 45 93.3 20 ....................................C.A.C.... TCAACAGATTCCTCTTTAGA G [25456] 25485 45 100.0 72 ............................................. ATTAGTTAGAACCCAATACTCGTTGTGAATCGCTTTCTTCCGAGCGATAGCGAACATACGATTCCCGAAACA 25602 45 64.4 21 A.AAAC..GA.AGAGT.....................A.A..CT. TGCTGAAATTAGAAACATCAT 25668 45 86.7 21 .....................................A.GCAT.C TCGGTTTACGATGGGCTAATG 25734 45 91.1 21 ....................................C.C..CT.. GGTTTTCAAATTCATCACTAC 25800 45 84.4 21 ....................................A.C.CCTCT TCAGCATTACTCATTTTACCT 25866 45 86.7 21 .....................................GC..CTTT TGTTGGGTTTATCCCAACTGT 25932 45 84.4 21 ....................................AAACGA..C GATTCCTTCTGGTACAGATTT 25998 45 91.1 19 ....................................A..G.GG.. TATGCAAGACCTCACAATG GA [26036] 26064 45 84.4 20 ....................................CG.AC.CTT CATTTCTATAACATTGCTTC 26129 45 88.9 21 .......................................CA.TCT TCGCAAAAGGTGAAGTGCATA 26195 45 84.4 21 .....................................GAGCGT.G CGAAGCTTTAGGCGAAGCCGT 26261 45 93.3 17 ......................................AC...G. CAGTAAAACTGGAGTGA CAA [26301] 26326 45 91.1 17 ....................................AGCC..... GCTCAACAGCAATTACT CAAC [26366] 26392 45 93.3 18 .....................................C..C.C.. TTATTCTCCCCCCATTTG AT [26431] 26457 45 91.1 21 ....................................G..CGA... TAAGCGAAATGCGTGAAGCTA 26523 45 95.6 20 ..........................................TG. TTTCTACCATGGGTTCTATA A [26564] 26589 45 91.1 21 ....................................C.A.GG... TTGTAAAAGCTCGTGAGGCGA 26655 45 82.2 21 ...............................G....AACGC.T.C TTTAGCATCAGCAGCAGCTTT 26721 45 86.7 18 .....................................ACGC.G.T GCTACAGTAAACAAAACA GG [26759] 26786 45 88.9 20 ....................................A.A.ACC.. TAGTTGTAACAGTTAATGCA 26851 45 86.7 21 ....................................AAAAGC... AATGATTGTGATGGGAACGCA 26917 45 91.1 17 .....................................CA.C.G.. GTACCAGAAAGAGATTA AGAG [26956] 26983 45 91.1 21 ....................................G.GA...G. GTAATGGATTTGGCAGCATAT 27049 45 93.3 20 ....................................C.....GG. TTGACTTATTCTGTGGAGCG A [27085] 27115 45 88.9 21 ......................................G..GCTT TTCGCTCAACCCTCCCGTAGT 27181 45 93.3 19 ....................................G.....GG. GAAACTTAAGGCGAGCACA GC [27217] 27247 45 86.7 19 ....................................AC.GC.G.T CGATAAAACTCACCTTCGC AA [27283] 27313 45 82.2 21 ....................................GG.GCGCGC TTTCCTGCTTGGCTTCCTGCT 27379 45 86.7 21 .....................................CC..GGGT TGACGTAAATAATACACCTCA 27445 45 84.4 21 ....................................ACCGAA..T GGTGGAATGACTTTCGAGCCT 27511 45 88.9 21 ....................................CGG.C...C GTAGGATAACCATTTTCTGAG 27577 45 86.7 21 .....................................A.CCA.CT TGCAATCGTAGGCAACAACGT 27643 45 88.9 17 ....................................A.C.CCG.. ATAGTGTACCAAGGCAT AGAA [27682] 27709 45 88.9 21 ....................................GAAC..T.. CGAGATTAGAACCGAAGTAAA 27775 45 93.3 21 ....................................C....CC.. ATTGCTATTAAATGGAAATCT 27841 45 91.1 21 .....................................AG.AG... TGTATTGATCATCTACTATTA 27907 45 84.4 21 ....................................GG.AAC.CC GTCTTTAACAGCCTCCGCATA 27973 45 86.7 21 .....................................GAGGG.T. TGGATATCTATGCTAAATCTA 28039 45 84.4 21 .....................................G.GGGGGT GGGGATTAAATCGTAAAACAT 28105 45 88.9 21 ....................................GGGG....G CAAACTTACCCATACGCTCGT 28171 45 91.1 16 .....................................A.C..G.G CCACACGACCAAATAA GGAG [28207] Deletion [28232] 28236 45 86.7 18 ....................................GAA.GC.G. GAAGTGCGATGAGATGCA AAG [28273] 28302 45 86.7 20 .....................................AGA.GC.G ATGTCTACCTAATAGGGATT 28367 45 86.7 21 ....................................A.AAAA.T. AATTATTATGGGGGGACTTTA 28433 45 82.2 21 ....................................AAAAAGG.T ATGACATTTACAGAAATTTTA 28499 45 91.1 21 ......................................C.A..TT GTCAGTTGATGCAGATTCAGC 28565 45 91.1 21 .......................................CAGC.. GTAGAGCAGCTTTAAAGGATT 28631 45 84.4 20 ....................................GCCG.A.TC ATCTACAAATGGAATGAGTG 28696 45 82.2 21 ....................................CACCACC.G AGCCAAGCGAAAAGGACACAA 28762 45 86.7 21 ....................................GG.GG.GT. GCCTTCGTCTCCACTTGCTGT 28828 45 93.3 21 ......................................G..GT.. ATCGACCGCCTTTTTTAACGA 28894 45 86.7 21 .............................A......AC.CAA... TATATCACTTTGGCGTTTCCG 28960 45 100.0 12 ............................................. CTTAGTTTGGGT AAAGAAT,GA [28997,29006] Deletion [29017] 29026 45 88.9 21 ....................................GG.C.G..T CTAGTTGGATAGACGACTTGA 29092 45 84.4 17 ....................................CCC.CCG.T TTAGGGAAAAGAACTTT ACCA [29129] 29158 45 91.1 20 ......................................A.C.TC. GCAAAAAAAACACTACCGTC 29223 45 93.3 21 .......................................GG..G. GCTGGCAAAACAGCCATTTAG 29289 45 82.2 20 ....................................ACCAACGG. AGTGTGGGTTTAGCGAGATT 29354 45 88.9 21 ......................................CAAAG.. ACAGCAACTGGAAAAATATTA 29420 45 88.9 21 ........................................ACGTG CTGAATATCAGTTCCTACTTT 29486 45 84.4 20 ....................................AAGGCA.C. GAAACATATCAGTAAACGAA 29551 45 88.9 21 ....................................G.A.CCC.. CTGTACTTCCACTCAAACATT 29617 45 86.7 21 ....................................AACAC.C.. TTAGTTGACGGTTGCCACATA 29683 45 88.9 21 .....................................AA.GC..C GGTATTAGCACCAATAGCAAT 29749 45 82.2 21 ....................................CGAAAAG.C TGAGAAAGCAATCGCAGATCA 29815 45 86.7 21 ....................................GAA.C..TC GGGCAACATTGACCCAACAAT 29881 45 91.1 18 ....................................A..AC..G. GCAAAGAGATGAGTTATT GAA [29918] 29947 45 88.9 21 ....................................ACA..C..G GACTTATTCGATAAGGAGTAC 30013 45 82.2 21 ....................................AGAA.GCGC CGATATGTGCTACGGTAGAAT 30079 45 86.7 21 .....................................CC..AGTT ATCTTCAACCCATAAGGCAAG 30145 45 86.7 21 ....................................GCCCA.T.. CAAATCTGTGCCAATGGATAT 30211 45 82.2 21 ....................................AGCA.GGCT GTATGGTTGAAGTGGTCGCAA 30277 45 86.7 21 ....................................CGGAA...T AAAGGCTTGTACAACTTGCAA 30343 45 88.9 21 ....................................G..GGG..T GAATTGAGCTACATCAGCAAT 30409 45 91.1 17 ....................................A.....GTT TGTTAGTGGTTTAATAA AAAG [30447] 30475 45 91.1 21 ....................................A.C.GA... AGTAGCAGATCAATTAAAACA 30541 45 86.7 20 ....................................CCCA..GG. CAACGTTTAATATACGAGAG A [30578] 30607 45 84.4 21 ....................................A.CCCCG.T GATGTTTTCTCTAGCATCCCA 30673 45 84.4 0 ....................................ACCCC.GC. | A [30710] ========== ====== ====== ====== ============================================= ======================================================================== ================== 83 45 88.0 21 GTTGTGAATCGCTTTCAAATTGTAATTTAGCACAGCTTTTTTAAA # Left flank : AAAGCAGGATTGGTGAGTAAAGAAGAATGGGCGGAATGGATGGAGGAAATGAAGTAACCTCGGAAGGATTCAAACTTATAGCAATTGCTATTCTATATAAACACTACTTGAGCAATACATACTATTCCTACCCTATTTTTCAATAAACAAAAAAGAGTAAATCATATTTTAGTCCCGAACTTATCGGGATGAATCGCTTTATGCGTGAGAAAATAATTTAAATGTGCATATACATGCTAAAAGCATGGGACTTCCGAGCGATAGCGAACATACGATTCCCGAAACAATAAACAAAAAAGAGTAAATCATATTTTAGTCCCGAACCTATCGGGATGAATCGCTTTATGCGTGTGAAAATAATTTAAATGTGAACGCATATGCATGCTAAAAGCATGGGACTTCCGAGCGATAGCGAACATACGATTCCCGAAACAATAAACAAGAGAGAGTAAATTGTAATTTAGCACAGCTGGATAGAAATAGTAGCATCTTCACGACTT # Right flank : AATAAGGGGTTGTTTTGATGCTATTTAAGGCTCTATTTTTGACTTCAGAATTATAAAACTATCTCAATTTTTCGACCTTCCACTCAAAAAAGTTCTAATTGTTGATGTGTTTCTGGTAATGCTTCTTTTTGTTGGGATAAATAAACTTCCATCATTCCGAATTGCTTATCGGTAAGGTGCAAAATACAGACGTGGCCTTTGGGTGGCAAGTTTTTCTTCGTTCGTTTAATGTGTACTTGTGCGTTTTCCATGCTCGGACAGTGCCGCATAAAGATACTCCATTGAAAACGCGTAAAACCATCCTCTTCCAGCTGCTTCACAAATTTTCGATAATTGCGTGTATCGGTTTTGGTTTGTGTTGGAAGGTCAAAAAAAACAATTACCCACATGATGCGATATTGATTAAAACGACTGCTCAAATTTCCCATACCGGAAGTTTCAGTTTCTTCCGCTCTTTCAAATAGCATGCCGCTAATGAAGCAGTAGTTTGCTGAACGGCC # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:-0.81, 8:1, 9:0.04, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATCGCTTTCAAATTGTAATTTAGCACAGCTTTTTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTCCCAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //