Array 1 11007-10364 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDTE01000002.1 Streptomyces lydicus strain ATCC 31975 S.lydicus_31975_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 11006 29 100.0 22 ............................. CAACAGGGCGGGCTGGGATCGG Deletion [10956] 10955 29 100.0 32 ............................. CAACAGCCTTTCCTTGGGCGGGCTGGGATCGG 10894 29 100.0 32 ............................. CTGTGGACCAAGGCGTACAAGGCCCACCAAGC 10833 29 100.0 31 ............................. GAGATGATCGGGAGGTCGCACGGGGCAGGTC 10773 29 100.0 41 ............................. CTCCCGCCAGCAAGCAGGGGGGGGTGGGTCCGGGGCCTCAC 10703 29 96.6 34 ..............T.............. CTCAGTCAGCACATCGACGGGGTGGTGTGCAGCT 10640 29 93.1 29 ............T.T.............. ATCCTCGTGAGTACGGCCGGGCACCAGGA 10582 29 96.6 32 ..............T.............. GGTGCTCTGATCGCCATAGCCAAGCTCGCGAA 10521 29 96.6 32 ..............T.............. ATGATGCGCTGGATGCTCCTTGCACCGTCCGC 10460 29 93.1 39 .....A........T.............. TACGTGACGCAGGAACACCCACCTGGTGAGCCATGCCTA 10392 29 93.1 0 ......T............A......... | ========== ====== ====== ====== ============================= ========================================= ================== 11 29 97.2 32 GTACGGCCCGCACGCGCAGGGACGGTCCC # Left flank : GTGTTTGATCCCGAAAGCGAAATTGAAACTGCAGCGCGACGCATCGGCGTAGCGGTGCAGGATCAGTCTCTGTTCAGGGGTGGGGTCCAGTGCCTCACGGACCACGACGGTGACGGTGTTCTCGGTCATGGTGCGTAGCTTCACACCCGGCACTGACAATGAATGCCCGGGAAAATGGCATACGCGTCGATACGAACTGTTTCCGTCAGGTGTGTGTAGATTTGTGGCTGCTCGCCGACACGGGCGAGCTCGGCCCCCGGACGGGGGAGTAGAACGCTCGTGGACTGCACCAGCCTTACGGCAAGGGCAGGCAGCCCCTCCCCGCTACGCGATGAGGAAGGAAGCGAGAAGCCCCGCCCTATGGCAGGGCAGCGCGGCCGGGAAACCGAGCCGCCCGTCCCAACTACCGCGTGGATAGGTACGATAAGGAACGTTTGCCGGAATCTGTGAAAGTGGTCTGAAACTGCAAAGCGTTAGCGCCCGCATGCAGGTCAGCGACT # Right flank : AGCTGGAGCTGAACTTGATGGGCCCCGAATCCACAGAGCGGCCGCATCTCCTTACCGCCCGGCATGAAGGCGTTCGCGCCGGGCGGTGACCAGGGTGTGCCAGCGGTTGCGGGTGGTGTGCTCGCCGTCGAGCCACCGGGCCTGGGCGCCGGCCTCTGCGGGCAGGGGTCGGTCGGCCATGAAGTGGGCGATGTCGGCGTAGTAGGCGTAGTCGCCGCTGCTGGTCAGTTCGCGCAGCTGGATGGTGGCGGCGGTCAGTTCGTCGGTGGCGTCCAGGACGGCGTAGTGGAAGCACAGGGCGAGTTGGAGGGTCGCTTCCTGTGAGGCCAGTCCGGCGACGTGGATCTGTGTGCGCAGTAGGTGGGTGCGGTCGGCGATGTCCGTGCTGCTGCCGGCGTCGCGGACGAGTGCTGCGATCTGGGTGGTCAGGGTGGTGGCGCGCAGATCGAGGCCGGCCAGAAGCTGCTGGGCGAGCTCAATCTCGTCGTCGGCCTGGCCGG # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGGCCCGCACGCGCAGGGACGGTCCC # Alternate repeat : GTACGGCCCGCACGTGCAGGGACGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 1918731-1917477 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDTE01000003.1 Streptomyces lydicus strain ATCC 31975 S.lydicus_31975_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1918730 29 100.0 36 ............................. ATGGTGGGGCAGGGGTGCGGGATGTACGCCACCCAT 1918665 29 100.0 35 ............................. TCGTACGGGTCCATCACGCTCATACCGGCGCCCCC 1918601 29 100.0 36 ............................. AGCACCGCGCCGCTGGTCTGGGGGTCGATGACCTGA 1918536 29 100.0 36 ............................. TTCACTGAGCACACAGTCAAGAGGCCCCCGTCTCCG 1918471 29 100.0 37 ............................. GTGCACCGGGTCAACGCGATCGTCACCCGCTACACGG 1918405 29 100.0 33 ............................. GTGTCCGTGAGGGCAAGTGCGCCGGTCGAGAGC 1918343 29 96.6 37 ......G...................... CTGTAGGAGGTGGAGCACCAGGCCCCGCCGCTTTCGG 1918277 29 100.0 35 ............................. TCGGTGCGGCGGGTGCTGTCCGCGCCGGTCATCCT 1918213 29 100.0 35 ............................. GGGGTGGCTTATCCCGGTCGAAGCCCTGCTCGCGG 1918149 29 96.6 34 .........G................... TCGTCTACTACGTCAGCGCGGCGCTGCTGGTCGT 1918086 29 100.0 36 ............................. CCGTCCTCCGGCAGGGCAGCCCCGGCAACCTTGGTG 1918021 29 100.0 36 ............................. GCGGCAGGGCTTCCACCTCCTTCGCCGGCTGCGCGT 1917956 29 100.0 36 ............................. ACGTACGCGAGCTTCCCCGCGGACGCCCACGCCCAC 1917891 29 100.0 36 ............................. GTCTGCGCGATGGCGCGTGTGGTCCAGTCCGGTCCG 1917826 29 100.0 35 ............................. AGGACACGTTCGGCCTGGACACCGGCTGGCACTTG 1917762 29 100.0 35 ............................. CTGACCCGGTCGGCGGGCGGGCGCCGGGTGAGTAG 1917698 29 96.6 36 ..G.......................... GCCGCCTACATGTCCTGGGTTTCTCGGCCGCGTCGG 1917633 29 100.0 35 ............................. GCGTACTGGCCAAGGACGTACGCCAGGGCGCACGG 1917569 29 100.0 36 ............................. CCGATCGCGGTGGTCAGCGGCACCCCCCGGATCGCC 1917504 28 89.7 0 .......................-..CG. | ========== ====== ====== ====== ============================= ===================================== ================== 20 29 99.0 36 GTCGTCATCAGCCCAGGAGGGTTCGCAAC # Left flank : TCATCCTCGTCTACGACACCGCCGTCGAACGCAACCCCAAAGTCCTCAAGACCTGCCGCAAATACCTCCACTGGACCCAACGCAGCGTCTTCCAGGGCGAACTCTCCACCGCCCAGTACCGCGCCCTGATCACCGCCCTGCGCACCACCATCGACCCCGACTACGACAGCATCGTCACCTACACCACCCGCTCGCCCGACATGATCGACACCACAACCCTCGGCGTCGCCCTGGGCGGCCCAGGAGACATCCTGTGAAACCACACACTGACCGGAAGTCGACAGAACGTGAACAGTCGACTAGTCGGCTGCGCCACGGCCCGACGCGGCGTCGGCCGAGAGTGCGGATGGGCTCATGCTCCGCAGCAAGGCCAGTCTGAACCGCTGACCTGCGGTAATGCCGCACCGACAGATCACCGCACAACCCATCCCAACGCAGCCAGAGGCATGTCCCTGAACTGGGGCTTTACCCTCGGGCCGTACGTCAGCCCGATCTTCTTG # Right flank : CGTAGCTGTGGGCGACCGCGATGGTCGGCTCGTCGCCGGCCTGTAGCGCCTGCCGCACTGCGGCAACGTCCTCGGGCAGCCCCGGGCCGCCGACGCCGCCGGGCAGGCCCACCTCGCCGCAGCTCGGGAGTGCCGGGACCATGCTCGGCACCCCTTGCTCCTGCAGCAGCTCGGCGGTGCGGTGCCACCACCACGACCCGTTCCGCACGCACGCCCCGTGTACGAACACGACTCTCATCGTCACCTCCAAGCCGGCCTCGACTGCCACCGGCCATCATGGCTCAGGTCTCGCCTTGTCAGCTTCTCCGCCAGGGCCTCGCATCAACTGTGTGGCTGACTCTCTCGTGTCGTCTATTCGGCTGCGGTCGTTCTGCCGCGATCGAAAGATCTCAATTTTCGATCGCCGCCGATCGAAACATTATGTGCGGCCGGAATGAGTTTTCATGAGGGGGGTGATGGCCCTGAACGCCCGATTCGGCGCGGTAGCTTCCTCTTGGGCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAGCCCAGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //