Array 1 501997-503489 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMWH010000001.1 Salmonella enterica strain LSP 38/19 NODE_1_length_681252_cov_44.809612, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 501997 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 502058 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 502119 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 502180 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 502241 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 502302 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 502363 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 502424 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 502485 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 502546 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 502607 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 502668 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 502729 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 502790 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 502851 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 502912 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 502974 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 503035 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 503096 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 503157 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 503218 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 503279 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 503340 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 503401 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 503462 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 519621-520547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMWH010000001.1 Salmonella enterica strain LSP 38/19 NODE_1_length_681252_cov_44.809612, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 519621 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 519682 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 519743 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 519804 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 519866 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 519969 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 520030 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 520091 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 520152 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 520213 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 520274 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 520335 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 520396 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 520457 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 520518 29 96.6 0 A............................ | A [520544] ========== ====== ====== ====== ============================= ========================================================================== ================== 15 29 99.5 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //