Array 1 15592-16519 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWO01000004.1 Pasteurella multocida strain HND13 Contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15592 28 100.0 32 ............................ ATTTTGTAACCCTGCCTGTTTTTGCCGTTATT 15652 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGTT 15712 28 100.0 32 ............................ AGTAAAGGCTTGTAATTCGTCTTTCTCCTTTA 15772 28 100.0 32 ............................ AGATTGGAGCGAAAATATCATCGAAAACTTGC 15832 28 100.0 32 ............................ ACGAATGCGCGTAGCCCACGCTTGCGCTTCTT 15892 28 100.0 32 ............................ ACGAATGCGCGTAGCCCACGCTTGCGCTTCTT 15952 28 100.0 32 ............................ ACGAATGCGCGTAGCCCACGCTTGCGCTTCTT 16012 28 100.0 32 ............................ ACGAATGCGCGTAGCCCACGCTTGCGCTTCTT 16072 28 100.0 32 ............................ ACTAAGCAGCTTTGCAAGTAAATTAATGCCAG 16132 28 100.0 32 ............................ AGTAACCATTCTTGTATCCTCTAAGGTGTAGG 16192 28 100.0 32 ............................ TTTAAGCCCATGCTTGTCGCGATATCTTTTGA 16252 28 100.0 32 ............................ TTTGGTCTAGTTGGGTTTGTAAAAAAATGTCT 16312 28 100.0 32 ............................ TTTACGACCACCTTCCATTACCCATTCGCGAG 16372 28 89.3 32 ................GCA......... GTGCAGGCTACGATTTAACTTTTTCCGCGCCC 16432 28 75.0 32 ...A..TGC.......GCA......... ATCACCACCGAAAACAGAATGCTGAATTAAAA 16492 28 82.1 0 ...A..TGC...............A... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 96.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AAACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 114950-113924 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWO01000005.1 Pasteurella multocida strain HND13 Contig005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 114949 36 100.0 30 .................................... ACGGCGCTTTCTAAATGCGATGGCGCGAAA 114883 36 100.0 30 .................................... TGCCACCACCGCCACCTTTTCCGCCTTTTT 114817 36 100.0 30 .................................... TGAATAGCCTCGAAATCAAAACCAGTTCTA 114751 36 100.0 30 .................................... CTCGCTGGCGTTGCCTGTCTCGATATACTG 114685 36 100.0 30 .................................... TATATGGGATCTAACGGGCGCATTCATTCT 114619 36 100.0 30 .................................... CTGTGGATGGGTGTAAGCCATTGGCTGATA 114553 36 100.0 30 .................................... TCTTCCCGATACTCCACGCCTAAATCTTCT 114487 36 100.0 30 .................................... TTAGATGAAGAAGTTTCTCAATTGCAACCT 114421 36 100.0 30 .................................... ACATCTTTATTTACACTGTCCTCAATCATT 114355 36 100.0 30 .................................... CCTTAATGTTATCATCCGTAAGATTCGTTG 114289 36 100.0 30 .................................... TGTCGATACCAGTCCAAGCTCTCGGGGGAA 114223 36 100.0 30 .................................... CACACATAGTCTAAACCCTGTGTAACCACA 114157 36 100.0 30 .................................... TCATATAAAGAACTGTACGCTAGAAATGTA 114091 36 100.0 30 .................................... GATTCTGTGATGGTATAGGAGCTCATAAAG 114025 36 100.0 30 .................................... CTATTCCTTTTGTGTCTGTCACTGGTAAGT 113959 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : ATGGATTGCCAATGAATAATGGAATTGATGCGGCAGGTAATCCATTTGGGTGCAATAGTCAAAGAGATAAAAATTATAATAATCAAGATTGATTTATAATTGGAAATGTAATTTTTTATTTAGTAAATGGCTTGATGGATAGGTTAGAAAATGAGCTTTAACGCAAAAAAATATGACACAGGGCGGTCAAGTTATTAAATACATGATCGGTATGTTCATGCAGATTACAAACATTGTCATGAGTTGGAGCTTTATTCTCTCCATAGTGGCTTTTTTTGGCTATATTTTTGCTGTTATGAAATTGGTCTATATTAAACACGCATTTGTTTACATGTATGTGAAATATATCATTTTTAACATAAGTAATAGTCTAAATAAAGCGAATAAGCTTGATAAAATCTATCAATTTGAATGGGAAACTTCAAAAGGTGAAGTCTTCACTGTAACGCGAACTTACGCGGAAATCTTGAAAGATGATTATTTCATTAAATGCTTTGAAA # Right flank : ATCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 101494-100687 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWO01000003.1 Pasteurella multocida strain HND13 Contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 101493 28 100.0 32 ............................ TTTCTCGCGGTTTTCTTGAACTTCCACCACAC 101433 28 100.0 32 ............................ AAGAAAACGGGTAAAAGTGCGGAAGAATTAGC 101373 28 100.0 32 ............................ TTTTGATCTGTAACTTTTTTTCAGCAATACCA 101313 28 100.0 32 ............................ TTAGTCAAAATTTCTTTCTGTAATCCCCAAGA 101253 28 100.0 32 ............................ ATTTATAACCGTTTACCGTTCTAAAGGAGTAT 101193 28 100.0 32 ............................ TGTTTGATTGCTACCACCCGTAGAAGAAGAGC 101133 28 100.0 32 ............................ ACGTTTTATCAAGGATAGAGTAGAAACCACTT 101073 28 100.0 32 ............................ ATACAAGTTGAAACCATCGCGCAACAATTCAA 101013 28 100.0 32 ............................ ACTGGCGCGCTTTCGCCTTGCGTTTTCACTTT 100953 28 100.0 32 ............................ ACTCGCTCAACCGTTTTTACAATTTTTCTTTC 100893 28 96.4 32 ............A............... GTCACCATCATTGTCACCATCACCCTCACCAG 100833 28 96.4 32 ............A............... AATTTTACAGGTAAAGAAGTGAAAGTCATGAT 100773 28 100.0 32 ............................ GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGT 100713 27 82.1 0 ............A.......T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.2 32 GTTAACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAATTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTCCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATTGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTAGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //