Array 1 68944-68449 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUFG01000010.1 Lactobacillus delbrueckii subsp. jakobsenii strain DSM 26046 597, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 68943 37 100.0 40 ..................................... CAACGTTAAAGTTGATAATCATTCTATAACTATTATCCTT 68866 37 97.3 40 ...........G......................... CAACGTTAAAGTTGATAATCATTCTATAACTATTATCCTT 68789 37 97.3 38 ...........G......................... TTAAAATGGCAAATCAGTAAATTCAATTCCACGAGTTA 68714 37 100.0 41 ..................................... TATCTTCAGCAAGAGTTACTTCGCCGTACAGGACTTCATCT 68636 37 100.0 43 ..................................... AAATTGCTCTGCCCACTCATCGAGGTCACTTCGCTTATAGCGG 68556 37 97.3 34 ....................................A TAATGAAAGCTTGACCATCAATTACAACGCTTAC 68485 37 86.5 0 .....C...............G........TT....A | ========== ====== ====== ====== ===================================== =========================================== ================== 7 37 96.9 40 GCTAAAAACTTATCTCCGCTAAAAGGAGACGAGAACT # Left flank : AGTAGTTTAAAGCTTCCGACTTTCATCGAAGGAGGCAAGTAATGGTTTTACTTTTGAGCTTTGACTTGCCTCGAAACACAAAAGAAGAAAGAAAAGAGGCTGCGGAGTATCGGAAAAGACTAGTGGAGCTGGGCTTTGATATGAAGCGATATAGTCTTTATGAACGAGAAGTTGAGTCATAGGAAACAAGCAAGCACTTGATCAAGACTTTGAAAGAAGAAGTTCCAGATGATGGAATGATCACCTTGTACTTGTTGCCAAATGAAGTTAACGACAAACAAATTACGATTTTAGGTAGTGAAGTGACACTGTCGACCAACACAAACCCAAAGCTCATCATAATTTAGTTGGTTGTATTGTAAAATATACGTAGTTCTCATTTAGCTGGCTATTTGTCCAATTTTCGGGCAAAAGTTAAGCCATAGTCTGATCACTTGTCCTGATTATGGACATTGAAAATGGTAGATTTTGGCGAAATATCAATGATTGTTTGGTGGTCA # Right flank : TCAGCGACGCCATTTTCCAATTCGTATCTTGATTTAGCCTCATATTTAGTTATGGGCGGGTATTACAGCTCAAAGACCGACTTTATTAGGCAGCAGATTAAATGGTTTGATGACTATCATAATCCAGTTATTACTGACAATTATGGCAATATTTCACGATTTGCCTTTGGGGATCCTGATTTAACGGTCAGTCATGAGTTTTTCAATATTTCAGCCATTACGCGCTGGGATCTAGACATGATTGATGACGCTTACGAGTCGATGCTTATCAACGAGTGGATGTGCTCCAAAGGATTCAAGATTGTTAAACTTGCTAACAAGACGGGATAAAGGAGAATTTGGACAAATCCACCCAATTTTAATCTTTTACCAGTATAATAAGGTATATGAGCATCTAATTAAGATGATTCAGCCAGTACGGCTTAATTTGCCGATTCATACCGTTAACGGCCATTCTAAGGATACAGAGCAAAAAAAGCATGATGAAAGCGCACACTTAG # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAAAAACTTATCTCCGCTAAAAGGAGACGAGAACT # Alternate repeat : GCTAAAAACTTGTCTCCGCTAAAAGGAGACGAGAACT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 48932-49879 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUFG01000061.1 Lactobacillus delbrueckii subsp. jakobsenii strain DSM 26046 638, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================================================================================================================== ================== 48932 36 100.0 30 .................................... TACATTGACTAGGTCATCCCACAACTTGGA 48998 36 100.0 30 .................................... ACGCCAATGGCAATCACAATTACCTTCTTG 49064 36 100.0 30 .................................... GCCACGCTATCCGCAAGGTTCGGGAATGCA 49130 36 100.0 31 .................................... CGGAATTGCCGTTGCTGTCGACATGGGCAAA 49197 36 100.0 30 .................................... TCTTACAAAAGCCCGAGGAGCTACCTCAGA 49263 36 100.0 30 .................................... TCGGCATCCCTGACGCTCAAACCCTTTACC 49329 36 100.0 30 .................................... AGATAGCGTTGACCCAGTAATTCCTGCTTT 49395 36 100.0 30 .................................... GACCTTCGAAAAGTTGTAGTCACGGTCTTC 49461 36 100.0 30 .................................... TTGCTGGGAAAGCCCCTAATGCCTTGATAC 49527 36 100.0 30 .................................... TCTAGCAAGAGAGAAGTGACAGACAAGCTT 49593 36 100.0 30 .................................... AGCTCTATTACTTTTGCTTCCGCTTACATC 49659 36 94.4 149 T..........C........................ GTTGTGTAGGTTCAAATCCTGTACTCTCCTTGTTTTGGAATATTTCCATTCAATGTTGTCAATTTTCCCGACGTATGTTGGGGGTGGCCATCATAATGGCCTAATACTAAGACGACAATTCTACTCATTCCACGTAGGTGGGGGTGATC 49844 36 75.0 0 ..........A..........C...G..GAC..AAG | ========== ====== ====== ====== ==================================== ===================================================================================================================================================== ================== 13 36 97.6 40 GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Left flank : CAGTGAATCTTTACTTCAAAAGTACATGACCAAATTAGCTAGTTATGTAGTTGATGAGCTAAGCGCAGATGGCAGAAACAGAATCATTACCTGCTATCGCGATTTACTAAATGCTGTTCAAGACGAGTTGCTTATGGAAGATTTGCCGCTTGAAATAAGTTTTGACACAGACTTGAAGAAACTCTTCAAATTTGGTGGTCTACACTTCAACAAGACACTCACTCGCGATCCATATGGTATAATCGAGACAGTACTTAGGATACATGACAGGTTAGATCTTAAGTCTACTGTTGTTTTTAGTAATGTAGCTCATTACTTAGATGCAGAACAGTTTAACGAAATATCCAAGCTGTGCTTAGAGCTAAAAAAGTCTATTATTTTTATCGAGTTTTGTAGCCATAAGGATCAGGTTGTATATGGTGATGCAAAATTCAGTTATATCGATGAAGACCTTGTTGATTGGTACTAGCCTTATATTAAAGCTGTGTTAAAAAATAACG # Right flank : GTGCTTTTCATGATTGAGAAGCACTTTTTTCTGTTGAACACAACAACTTAAAAAAATGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAATAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCGTGGCGCGTTAAAAGAAGCCGGCCTTGACGCCAAAGCCCTGGATGCTCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATAGCCCGGCAAATTGCTTTAAACGCCGGGATGCGGCAAGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCCCAAATGTTAATCGGTGACCTGGG # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.91, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //