Array 1 698511-701385 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002372.1 Streptococcus thermophilus M17PTZA496 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 698511 36 100.0 30 .................................... CGTATTCTCTTGAATCATCTACCCAATCCG 698577 36 100.0 30 .................................... ATTGCCAGAATTAGCAGTAGCTAAAGGTTT 698643 36 100.0 30 .................................... GTGAAGCCTTGAATAGTACGATTAGTCAGC 698709 36 100.0 30 .................................... ATAGGTCGCTTGACTAAAGCGCCAGAACTT 698775 36 100.0 30 .................................... AAGATGGAAGAAGGTTAGTTAAGTTATGAG 698841 36 100.0 30 .................................... TGAATTACACGAATTACTAGAAAGGCAGTT 698907 36 100.0 30 .................................... TACGGCATGACCAGTACCTATCCTAAGATG 698973 36 100.0 30 .................................... CTATCAATCGTCAATAACAACAACCTACTG 699039 36 100.0 30 .................................... TTCTACTGTTAAACCAGTTTTGAAACAAGG 699105 36 100.0 30 .................................... GTTTATAGTCGTCATTGTACCCATAACGCA 699171 36 100.0 30 .................................... TTCAAACTTAGTTACGAGCTTGCTTAAATT 699237 36 100.0 29 .................................... AGATTTAATCAGCGATAAGTTAGGAATCA 699302 36 100.0 30 .................................... GGGATGATATGAAAGACAATGCTAAAGAAA 699368 36 100.0 30 .................................... ATTCATTAATATCTGCAAGGATTTCTTGTT 699434 36 100.0 30 .................................... ACATCTCATTTTCGGACGACCCATTTCTTT 699500 36 100.0 30 .................................... TTGTTAATTCTGGCGTGACGATTGTATTGG 699566 36 100.0 30 .................................... AAGTCGCTATTTTAAGTTCGAGAACGACTT 699632 36 100.0 30 .................................... GCCAATCCTCTAACGCTTCATCAAGACCTG 699698 36 100.0 30 .................................... ATTGCCCTACAAAGCAGTGTCAGCGACAGT 699764 36 100.0 30 .................................... AAAAATTACAATCAAAGAACTCCGAGCACG 699830 36 100.0 30 .................................... CAAAGGTTACGTCGATAGTTCAACGTTTGA 699896 36 100.0 30 .................................... AGCTCGTCTAGCACAGAAACAAGTTCAAGT 699962 36 100.0 30 .................................... AGTAAGAAAGACAACGTTCTTATCGAGACA 700028 36 100.0 30 .................................... AAATCAGAACTATTAAAATCCCAGAAATCA 700094 36 100.0 30 .................................... TTTCCATTGTGGTCTTTACTCCTTTTTAAA 700160 36 100.0 30 .................................... CGAAATGGATAGAAATGTTAAAAAGACAAA 700226 36 100.0 30 .................................... CGTTTAGACGGATTAAATAAGTCTGATCAA 700292 36 100.0 31 .................................... CCCGGGAAGTTTTGGGTGAAAAGATCACCAA 700359 36 100.0 30 .................................... GGAAAGAGAGACATTTCTTTCAGTAAAATG 700425 36 100.0 30 .................................... AATGACGGAACATATAACGGCTTAACTGTT 700491 36 100.0 30 .................................... TAGCTGATGGAGGAGTAAGTGCTACTTATT 700557 36 100.0 30 .................................... TGAATTTAACAACCTTGATTTTGATATCAA 700623 36 100.0 32 .................................... ATACGCCTTCTGGTGGAAAACATATCTTCTTA 700691 36 100.0 30 .................................... TCAGTTGTTAACTCAACACCAATAATAATT 700757 36 100.0 30 .................................... CTGGTAAACTATTACCAATAGACCACGCAA 700823 36 100.0 29 .................................... TGGCTTTTATAGGTTTTCTGTCATCTACA 700888 36 100.0 30 .................................... ATGGTAGCTCCGCTCTTGGCTTGTGCTCCA 700954 36 100.0 30 .................................... GAGTGCAACTAAATACCTTATACCCCAAAA 701020 36 100.0 30 .................................... CTCACGGTTACGCTAATGGTGGTCTAGTCC 701086 36 100.0 30 .................................... TTCATAGTTCCGTCTCGGTTTAATTCTGTA 701152 36 100.0 30 .................................... TAGCTTGCTACCAGTAATGCAAACCAGATT 701218 36 100.0 30 .................................... ACTGCTGTAGAAGTAAGTAGTGTATAACCA 701284 36 100.0 30 .................................... CAGTATTGATTGAGTCACAAACGCTTGACC 701350 36 88.9 0 ................................GGTT | ========== ====== ====== ====== ==================================== ================================ ================== 44 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCATACCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TCTGTTGCAAAGTTGACCAATAAATCTATTTTAGTATAAAATTCAGTAAAAAGACAGTGAGGACAGAGTAATGAACCACTTTAAAGGGAAACAATTTCAAAAAGATGTGATTATTGTCGCTGTGGGATATTATCTACGTTACAATCTGAGCTATCGTGAAGTTCAAGAACTACTGTATGACCGTGGTATCAATGTCTGTCACACTACGATTTATCGCTGGGTTCAAGAGTACAGTAAAGTCCTCTATCATCTTTGGAAGAAGAAAAATAGACAGTCCTTCTATTCGTGGAAAATGGATGAAACCTATATCAAAATTAAAGGACGTTGGCATTATCTCTATCGTGCAATTGATTCTGATGGATTAACTTTAGACATTTGGTTACGAAAGAAACGGGATACTCAGGCGGCTTATGCTTTCTTAAAACGGCTCCATAAACAATTTGGACAACCTAGAGTGATTGTAACCGATAAAGCACCATCGATTAGTTCTGCATTCAGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 702233-702927 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002372.1 Streptococcus thermophilus M17PTZA496 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 702233 36 97.2 30 .............T...................... ACATGCCATTTCACGTCTACTATGATCAAT 702299 36 100.0 30 .................................... ACATGCCATTTCACGTCTACTATGATCAAT 702365 36 100.0 30 .................................... TTACACTTAAGAACTTTTCTTATGTCTGTT 702431 36 97.2 29 ..........C......................... AAATACAACGATAATGATATAGTAAAATC 702496 36 100.0 30 .................................... AAACCCTTGATACTACTGGATTTTTAGGCA 702562 36 100.0 30 .................................... AAACTTTATTGTTTTCTACGTTGCAGAAGG 702628 36 100.0 30 .................................... ATTCGTTGTTGAATAAGTGTTCGTATTATC 702694 36 100.0 30 .................................... ATAAGGCCGATAATGCCGCTGTAATGCATG 702760 36 100.0 30 .................................... TACGAATAATTAAACCCGCCCACGAAAACT 702826 36 100.0 30 .................................... GGGCAATGATCGGTAAAGGTTTGGCTGATG 702892 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TGATTCTGATGGATTAACTTTAGACATTTGGTTACGAAAGAAACGGGATACTCAGGCGGCTTATGCTTTCTTAAAACGGCTCCATAAACAATTTGGACAACCTAGAGTGATTGTAACCGATAAAGCACCATCGATTAGTTCTGCATTCAGAAAGCTACAGATTAACGGTTTATATACCAAGACAGAACATCGGACAGTGAAGTATCTCAATAATTTAATTGAGCAGGACCATCGTCCAATTAAGCGCCGTAATAAATTTTATCGAAGTTTACGAACTGCCTCAACCACGATTAAGGGCATGGAGACTATTCGAGGAATATACAAAAAGAACCGAAGAAACGGAACGCTCTTCGGATTTTCGGTGTCGACTGAAATTAAAGTTCTGATGGGGATCCCAGCATAGTCAAAATGTTAAACTAGGACTTCTATACTCTTTTGGGAAACTTTGCAACAGAACCTAACTGTACAACAGTTTAGCAATAAGAACTATACAGGAAAAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //