Array 1 976332-977824 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060515.1 Salmonella enterica strain SLR1_8094 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 976332 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 976393 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 976454 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 976515 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 976576 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 976637 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 976698 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 976759 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 976820 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 976881 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 976942 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 977003 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 977064 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 977125 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 977186 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 977247 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 977309 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 977370 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 977431 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 977492 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 977553 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 977614 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 977675 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 977736 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 977797 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 993956-995920 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060515.1 Salmonella enterica strain SLR1_8094 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 993956 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 994017 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 994078 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 994139 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 994200 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 994261 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 994322 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 994384 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 994445 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 994506 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 994567 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 994628 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 994689 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 994750 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 994811 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 994872 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 994933 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 994994 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 995055 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 995116 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 995177 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 995239 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 995342 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 995403 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 995464 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 995525 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 995586 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 995647 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 995708 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 995769 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 995830 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 995891 29 96.6 0 A............................ | A [995917] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //