Array 1 36957-37756 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL883707.1 Parasutterella excrementihominis YIT 11859 Scfld48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36957 29 100.0 32 ............................. ATCATTACGCTAGATTTCGACCCGTGCGGTAA 37018 29 100.0 32 ............................. ATCCTTATCCTTTTGTTTTAGTCCGGGCAAAT 37079 29 100.0 32 ............................. ACCGAGCCGATGATTAACCTCATCATCTCAGT 37140 29 100.0 32 ............................. GAAGATTGCATTAAACATAATGTCGAGAAGTA 37201 29 100.0 32 ............................. CGACACCCTGACTTAGTAACCGTGAAATCTTC 37262 29 100.0 32 ............................. CCGAAGTCGAGGCCGTAAAAAGGTTTACATTC 37323 29 100.0 32 ............................. GTTTTATCTCTCGGGACGCATCCTTGTGGTTA 37384 29 100.0 32 ............................. AGATGTTTAGACGTTTGACGAATTGGCGCCGG 37445 29 100.0 32 ............................. ACAGCGATAAACGAGCGCGGCAGAAAAATCCG 37506 29 96.6 32 ............................T CGAAATTCCTGAGTGGGCGAAAATGATCATTC 37567 29 93.1 10 ...........................NN NNNNNNNNTC Deletion [37606] 37606 29 100.0 32 ............................. GCAAACATGGACGCACCTGAGATTGCACGTCT 37667 29 100.0 32 ............................. CGTAATGTATATACGTTCAACTGTTTATTCAG 37728 29 86.2 0 ............C...........GTT.. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.3 30 GAGTTCCCCGCGTAAGCGGGGATGAACCG # Left flank : GATTCGAGGATCCGAAATTTTTCACTCGTGAGTACAAAGACTATTTTGGTTTGTCGCCTCGAGAAAATATAAAAAAGATAAGAGCAGAGGAGGGCATCAATTAATTTTTTAGTGGAAAAATCTAGCAGATTTCGAAGAAAGAATTTCTTGGCAGCTATGGGATTGGTTGGTGTGACGCAAATAGGTCTCAGAAAATTTGTGAGCATCCCAACTTTAAATAATTCTGATAGAATCCCTCCTTCCAACGGAAGGATGGCAGAGTGGTCGAATGCGCCGGACTCGAAATCCGGTATACGGTTATACCGTATCGAGGGTTCAAATCCCTCTCCTTCCGCCATTTTTCTACTTAATGCCCCGTTAACACATTTTCTCCTCTCTACGCAGGCTTCGGTATTTCAGAGAAAACTGATAGTATCTTTAGTAGCTTTGTTCTTGTTTAGAAATGTTCTTTAAAAGCTTAGCGGTAAGCCGATTAGTGTAATGTTGTAACCATTTTAAGT # Right flank : GGACTTACCCTGCATGAAGGTAATGCTGGAGAGTTCTCCGCTCGAGGAAAATGATTGTCAGAAGCTTAGAAATTACCTAGCTTTTCCTGTTCTGAAGAGAGGGTAAGGTCTTAGATTTTTTCCTTTTTAATTTGAAGCGATTCAATTGAACTTTTCAAAAGGTAAGGTTTCCTTGTGTACATTCAATTAGCAAACTAAGTAATTCTACTTTGGTTTTGGTTGGATCGCTTCGTTGTAAAATCTCAAAATAAATCAAATTCAACCCCTTGACAGCGTCCTTTGTATATATTGGAAAGATTGTATTGTTTCCTCGAGGGTTCGAGCCATGGAAATGGACCTAACAACTAGAATTATCGCCATTGTTGTTCTCATTCTTTTCAGCGGTTATTTCTCTATGGCAGAGATTTCGCTAGCCGCATCTCCTAAAGTTAAATTGCATCAAGCATTAGATGCGGGGGATAAACGAGCACAAAAAGTGCTGGATCTTCAAGTTAAACCAG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTAAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55829-56004 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL883755.1 Parasutterella excrementihominis YIT 11859 Scfld238, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 55829 36 100.0 34 .................................... ACATTAAAGGCAAGAGACACTAGCGCGATAAATT 55899 36 100.0 34 .................................... CCGCAAACCGCGAGAAACTCAAGGAACTTTTGAA 55969 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================== ================== 3 36 100.0 39 GCTTCAATACTACATTCTTCTAACAACTACTGAAAC # Left flank : TCCAGACTCCCCCGCCACTTCAGCACAATGCGGGCAATGCGAATTTTTGAATTTTTGCGGGGACCGCTTCTAGCAACACAAAAAGCCTCCTCGGAGGCTCTTCGTTAATCCGGATAAGGTCAAAGACCTCAGTAGCCGGATCTAATATTTAATCAAATTGATTTCAGCTCGCCCGAAGGCGACTTCGTTGTTAAAAGAATGTAATTAAATATTGCCAGAAATATTCTAAATAGTCAAGCAATCACCCCAATTTTTCGAAAATAACGGCACTTTTCGTGCAGGTCGACCATTTTCGAAAAACAGCTCCGAAATCAACCTATCAAAATCCTTTGTTTTCAAATAATTGAGTCCGAGGCTTCAATACTACATTCTTCTAACAACTACTGAAACGCGAGGTCAACGGTAAGACCCGTAATCTTCAGCNNNNNNNNNNATACTACATTCTTCTAACAACTACTGAAACGAGATCAATTCACTTTCGTGATTATTCCGGCGGAAGA # Right flank : CGCGATTAGACCGAACAACTTGAGTGCGTTGTCATTNNNNNNNNNNCAATACTACATTCTTCTAACAACTACTGAAACTCGAATGACGGGGACGGCCCACGAATTGCCGATAGCGCTTCAATACTACATTCTTCTAACAACTACTGAAACGATACATTGAAGTTTTTAAAAGATCCGCCTGTCACGTTTCAATAACTATTGAAACTCCAGTCCTCGGCGTTGAACTCGAACTCTAAGGTTTCAATACTACATTCTTCCAAGGATTACTGGAACTGTCTAGTGGCGTAGCCAGAATCTTTTTCTAAAAAGTCTCCGAATCACATTCTTCTAACTGTCGCTGAGACCAAATATTCGGCGTCCAAGAGCGAGACAAACTTTCGTTTACACCCTACTCCACTTCGGTACAATCATCCACGTTGTAAACAAATGCCACTCTCGTCAAAAAGATAGTTGCCTAATCTTTGTCAGTTTGCGAAAAACTCGCTCTCGCCTTTCTGGAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATACTACATTCTTCTAACAACTACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 11640-12394 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL883759.1 Parasutterella excrementihominis YIT 11859 Scfld303, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11640 29 100.0 32 ............................. TATGCGAAATCTGCACGCCTACCAGTTCTGCG 11701 29 100.0 32 ............................. TGTCTTGACAATCGTGTATAGTTCGCTCGACA 11762 29 100.0 32 ............................. GTTGAACGGATCGACTCGCTCCCACTCAAGCA 11823 29 100.0 32 ............................. TCATGTTAACCTCAAAAGAAATTAAAGAATTA 11884 29 100.0 32 ............................. AGGCCTTTGGCGGGCGCCGAATGTTTCCTGCT 11945 29 100.0 26 ............................. CCAGTAACAGAAACAGTATCAGTAGC 12000 29 100.0 32 ............................. GTACGGCGCACTGCCGAGTAAAGCTCATCGGT 12061 29 100.0 32 ............................. AATCCGCCCACCAACCCATCTTGGATTCACCC 12122 29 100.0 32 ............................. TCTCCGAGCCAGCTCGGATTGACTGACCTTCT 12183 29 100.0 32 ............................. CATAGACAGTCGAGGCCAAAGAAACTCGGTCA 12244 29 100.0 32 ............................. AAGAGGGCAAAGGAAAGTTTATGACAGGCAAA 12305 29 100.0 32 ............................. GGTTTGGTGATTGGTGCTTCATCCAACGATGA 12366 29 89.7 0 ......................G..G..T | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GAGTTCCCCGCGTAAGCGGGGATGAACCG # Left flank : AGAAGAGTTTTTTCTCGTGTCTCACTGGTTCCTGGTTCAAGTCCAGTTGGGGCCACCACCTTCTTAATTCTATTTATGACAACGCCTCAGTCTTTTGAGAAGGAAAGGTTAAAAACGAATCATTAGAAGTTCTGATAGAATTGCACTTCTGCACAATGGTGATCTCTTCATCATTAGGCCCCATAGCTCAGTTGGTTAGAGCAGTCGACTCATAATCGATTGGTCACTGGTTCAAGTCCAGTTGGGGCCACCACCTCATCTATTAAATCCAATTAATTGAAGTCAGGATGGAACAGATTCTGAACCCCAGCCTTCTGTAAACGTTATTATCCTCTTTCAGGTCAGCAGAGCATTTGTCTTTGAAATTAAATGGCTCTGAAATTTTCTAATCCAGGGAACTGTTCTTGAAATGATTCAAAACAGTCTCAGGGTTCTTTGCATATTTTTCCGATAGGAAATCTTTGCTAGAGTTAGTAAGGTGCTCTATGCCTTGTTTAAGT # Right flank : TCGCTCGGCGTCGGCCTTATTCCCCTGTAAAGAGAGCTCCCGCGTGAAGGAGATGTACCGGTCTCTCAGATGTGAGCAAAAAGAGCCAAAGATTTTTCTAGTAGGTCCAGTCGTAGGCTTAATAGTGAAGATCGTGGCGGAAGTGATCAAAAAAGCAGTCTATGAAAAAATCCTCTCAAAGGACGGAGTTCCGTTAATAAATAACCGCTTTTCTTGTCTTTTATTGTCAACTTGATATTTAGAAATTGTCGGTTATCTCAACCAGTTGCGAAATCTCGAATTTCTTACCCTGCGGACAGGTTCATAACCAAATAAAAAATTAAAGAGAGGTTAACCATCTCTTTTATGTTGAAATTTTCGACTACTTAATGATCCTAATCCTATCAAAATGAAATAGTCAATTTTCTCAAGGATTTCTTCAGGTTGTGAACACCCCAAAAATTTGGAATTTTTATCTAGGTAAAAAATGATTACCCTTTAAGCCGACAACCTAACTTTCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTAAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21486-22061 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL883759.1 Parasutterella excrementihominis YIT 11859 Scfld303, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21486 29 100.0 32 ............................. TCTTTTAAATCGTCCTTCATATCCGTACCCTG 21547 29 100.0 33 ............................. CTATGTACTGTCCCTCAGTGAGTTTGCAAGTAA 21609 29 100.0 32 ............................. GGCTGGAGGATGGCTAAATGAAAACACTACAG 21670 29 100.0 32 ............................. ACGTGTACTCAGTAACTTTTTTACGTTCATAC 21731 29 96.6 32 ............C................ GCACAAGCCCGCACGAATATCGGAGCCGCCAA 21792 29 96.6 32 .................T........... GTCAGCAACGTAACCTAGACGATCTAAATCCT 21853 29 96.6 32 ............C................ TCCAACTGGACAATGGCCCACGACGGCTTAGA 21914 27 93.1 32 ...........--................ ACTGATTGATGTTGAAAATCCAACAGCTATGC 21973 29 79.3 33 ........T...C.....A..GC.G.... ATGGATTGGGTCATCGATCATCTCGATGTCAAA 22035 27 86.2 0 .........A.--...........G.... | ========== ====== ====== ====== ============================= ================================= ================== 10 29 94.8 32 GAGTTCCCCGCGTAAGCGGGGATGAACCG # Left flank : ACGAATCATTCCCATGATCGAAAATGTTTTGGCTGCGGGAGGAATCGAGCCTCCTAAACCTGATAAAGATATGTGGGCACCGGCGATTCCTGAACCTGATACGCTCGGAGACCCAGGTCATAGAGGAAAAGGCTAATGACAATGGTGGTCGTAGTTACAGAGAACGTTCCTCCAAGGTTAAGAGGCAGATTAGCGATCTGGCTGTTGGAAGTTCGAGCTGGTGTATACGTGGGAGCTGTTTCTAGGAGAGTGAGAGAAATGATTTGGAATCAAATGACGCTCCTCTGTGAGGATGGGAACGTCGTCATGGCATGGGCGACGAACAATGAAACTGGATTTGATTTTCTAACCTTTGGTAAAAATAGACGAATCCCGGTTGAGATGGACGGTCTTCGCTTGGTTTCGTTTATACCGTCGTCTTAATTCGTTAGTTAATGCTCTTTAAAAATTTCGATTAAATGCCTAAAGTATGAATAGACGGATTTATACCGTCTTTAAGT # Right flank : GTGGATTCAGCAATAATTCAAGAAGACCTCCGCTTCTTTCCTCATTATGTTATTGGAGGGGTTGATCGAAAAAACAATTTCTTCTTTCCCTTTACTGCTGAGTTGTACACGTACATGGAAGTGAACCGTAATGATGGATTTTTCAACGGTTTAATTTCAAGTACTAGATGAACCGTAGTCACTTACTGTCTTAGATATTGTTGTTGGAAATCCTTCTGCGAAAAGAGTCGGAATTGATAGAAACTATCTTTCTATTCGTATTAATTCACTATCATCTCCAAAGCCTTTTAGGCTTCTCTTTCTAATTCGAAAAAGAAGGTTTTGCTCAAGAATTTAGTGCGCTAAAAGTATTAATAAAATCACAATATTGATTAAAGAACATACCTTCTATCAGCCAGATGGCTTTGAAGGATGAAAGCTCATCACCCATTGTGCCTATTCATGGTCGAGCACAATAAGCGCAAGTTCTAGAGTTGTAGAATGTTTCTTTTGGGATTTTT # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTAAGCGGGGATGAACCG # Alternate repeat : GAGTTCCCCGCGCAAGCGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //