Array 1 178062-176660 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKS01000001.1 Actinomyces oris strain WE8B-23 WE8B-23_contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================ ================== 178061 33 87.9 40 A.....T.........A...T............ GACCCGGCCTGGGAGACCGGGGTGTATGCGACCAGCCCAT 177988 33 97.0 37 ..................C.............. AACGGCTGGTTCTCCATCCCGATGGCGTGGTGCAGGT 177918 33 100.0 38 ................................. GAGGCGGCGCCGTTCCTGGCTGCCCTGATCGAGGACTT 177847 33 93.9 37 .................C........A...... AACAGGCGACGATCGGTCACGGACTAGCCCAAGCTCA 177777 33 100.0 39 ................................. AACGGGGGTACGAGAAATGGCGGTCTACGGGTCGCCGAC 177705 33 100.0 39 ................................. AACTCGGAGTCATAAGCAGGTTCCTGGTCAGAGTAGCAT 177633 33 97.0 40 ..........................A...... AACTGGTCAAGATTGCTCATCTCAGTGACATCCATGCTGG 177560 33 93.9 37 ..T.......................A...... AACCCTGGTCCGTCTCGTACTGGATGGTTGACGACGG 177490 33 100.0 40 ................................. AACGGGTCGGCCGGTTGAGCGTCGGAACGTTGTGGACCAC 177417 33 100.0 38 ................................. AACTTGAGGACCTTGTCCTCGATGACCGTGTCCAGGTT 177346 33 100.0 38 ................................. AACCGCAACATGGGTGAGGGCGTGCACTGGATCCTGGA 177275 33 100.0 40 ................................. AACCCCTCTGGGTGTTCTCCAGCTGGTCGGACTCCTGCCG 177202 33 100.0 40 ................................. AACGCTTCGTCATCTGGCAGCCAGGGCAGTCCGGTGTCGT 177129 33 100.0 37 ................................. AACTCAGCATCAGTAGCGATGGCGTTCCAGTGGTGAG 177059 33 100.0 38 ................................. AACGGGATCGCTGGCCCTGCCACATGGCGGGTGTTCCA 176988 33 93.9 38 .......................C....T.... GACACCTGGACAGCGGTGGGGCGCGCGATCTTGCCGCC 176917 33 100.0 44 ................................. AACATGCTCAAGACCTCGGATGATCCGGGGTGGCCGTTCCACGT 176840 32 87.9 40 ................A-C...A.......... GACGGGTGGCGCCTTTGCCGACGGCGTCCAGGCCCGCTCG 176768 33 90.9 43 A......C.................A....... GACAGGTCGGGGCCCTCGCCCTCACCTGGCTCACGCGCTACCA 176692 33 97.0 0 .................C............... | ========== ====== ====== ====== ================================= ============================================ ================== 20 33 97.0 39 GCCTCAATGAAGTGCAGTTCCCGAAGGAACTGC # Left flank : ACGCAGGACGTGGTGGCGGCCCGGGCGCTGGCCCTGGCGGTGGAGCTGGCGGTCGGCGAGCGGGAGGAGCAGGAGGCCCGGCTGGCGACGCTGCGGCATCGGATTCTGGAGGGCGCTGGGGCACTTCCGGGTGTTCACGCCACGTTGCCGGAGGGTGTCGATCATGTGGCCTCCACGGTGCACCTGTGGTTCGAGGAGGCCGACGTCGAGGCACTGCTCATGGCCCTGGACCTGGCGGGGGTTGATGCGTCGGCGGGGTCGGCCTGCCATGCCGGGGTCACCCAACCCAGTCACGTGCTCCTGGCGATGGGCTTTCAGGAGGGGCCGGCCCGCTCTACGCTGCGCTGCTCCCTGGGTCGGGAGACGGGCTCCGACGATGTCGAGCGCCTGCTCGCCGTCCTGCCCGCCGCCCTGGAGGGGGCCAGGCGAGCCTGGAAGGTGACGCACAAAGAACAGTAGGCGGGGATTGACGACCACAGTAAGTGCATCAATCCCCACCC # Right flank : GACGGCCCGCTCAGTATAGCCCAGCAGCTTCACCTTCCACTCCGAGCAGGTCCGCCAGCGACTGCGCCAAGACGGCGTCACGTTGCAGGCGACGCATCCGCTCCACGGTATCAGCGGCCTCACCGTTACGTCGCAATAGCGTGGCCTGGTTCGCGATCTTCGCCGAGACCATCTGCTGGGCGATGTCCTGCCTCCCCTCGGCGCTGGCAACATGCTGGCGCACCCGCTGGAGCCCATTAGGAGAGTCTGCGCCCTGAGACCAGCCGATCACTCGGCCGGACCATGAGCACCACACCACGCACCGGTCGCGCCAGCACAGTTCACGCAGCAGAGCCGAGGAGACATCGACGTTCCCATGGACCACTAGACCGAGCACCCGTTCAATCGGCACGCTGAGAAGGCGCTCTCCGGCTTTGGTGGCCTCGACTCGCCCGCTACTGAGGGACACCCGCGAACCAGCGGTGGCCGCGTGGAGGATCTGGGCGTCGGGTGCGGAGGCG # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGTGCAGTTCCCGAAGGAACTGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 129770-130165 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKS01000013.1 Actinomyces oris strain WE8B-23 WE8B-23_contig013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 129770 29 100.0 32 ............................. GGTCCCGCCACTCGGCGTAGACGTGGGAGAGG 129831 29 96.6 32 ............................G ATGGTCGAGGACGAGATCAACGGCGGCGTGCG 129892 29 96.6 33 ............................T ATACCCCGCATAGTTCCCTTAAACGTCTCGGGA 129954 29 96.6 32 ............................T GGGGTGACATCATTTATGCCACGACTACGAAC 130015 29 100.0 32 ............................. ATTATTTCAAGCAAAGACACCAGCGGCGTTGG 130076 29 96.6 32 ............................T TGACGAATAATTCATTGACGACTCGACTTGAC 130137 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 98.1 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCAGCGTGCTGTAGCTGGTGGGGCGAACTACGCTGGAGAGGACGCAGGAGGATGGTAGTTCTGGTTCTCTCCGCTGCCCCTGCCTCGTTGCGGGGCTCCATGACCCGCTGGTTGTTAGAGGTCTCTCCTGGGGTCTTCGTCGGGCATCTCTCAGCTCGAGTGCGAGAGCAGTTGTGGGAGCTGGTGCGCGCGTACATCGGGGAAGGGCGAGCTCTACTGATCTGGTCGGTGCGATCCGAGCAACGGTTCGAGATCGCCTCCCTGGCGCACGAACGTGAACCGGTCGATATCGAAGGGTGCCTTGTCATGCGCACCCCGTATCGGCAGATCGAGGGATCGCAGGCGATCCCCGGCGCCGTCAAGCCTCCGAAGGAGTCCTGGTCGATCGCTGCGAGACGACGACGCTATCGGAACTCTGCGGAGCGAGCGCTAGGTCGGCAGTGAAGGCAAACGAGGTCTGGTAGTGTGGCTCGTCGTTGGGATTCCAAGGATCCGCAAGT # Right flank : CGTTTCCTCGCCGTGGTGGGGCTATGACGGCCGTAAACCCCGCGCGAGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9438-10113 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKS01000022.1 Actinomyces oris strain WE8B-23 WE8B-23_contig022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 9438 36 100.0 28 .................................... TCGGCGGCGAGCTCGCGCCAATCGTCCT 9502 36 100.0 28 .................................... AGGGGCTCAAGGGCCACCTCACCGCCCT 9566 36 100.0 28 .................................... CGACGCGTCTTGTGGAGCTTGTCTCGAC 9630 36 100.0 28 .................................... GCTTCGTGCCGGACGTGGCCGGCGACGT 9694 36 100.0 28 .................................... CGTTCAGGGAGCCGGTGCCTGTGTCGGT 9758 36 100.0 28 .................................... GCTGGCCTTGTCTGGCGGCGAGGCGATC 9822 36 100.0 28 .................................... ACGGTACTCGTTCCCTGGCGGAGGCTCT 9886 36 97.2 28 .....................T.............. GCTCGAAACGCTCAGGAAGGGCACGGCC 9950 36 97.2 28 .....................T.............. CTGGGTGTGCTGAGGGATCCGGAGTGGA 10014 36 97.2 28 .....................T.............. TGACGACTTTGGCGAGTGCTGATGACGG 10078 36 97.2 0 .................................G.. | ========== ====== ====== ====== ==================================== ============================ ================== 11 36 99.0 28 GAAGTCTATCAAGGGGTCTGGCGACTGATTCCCAGC # Left flank : CGTTCCGTGACGACGGTGCTACGCTCCCGACCGTCTTGGAGGAGTTGGCTCAGCACTTGGGTCAGTACTGTGAAGGGGATCGAGCCCGCTTGGATGTCCCGTCGTGGACCGGTCCGAGGCGTGAGTCCTGATGGCGGATGATCCAGTGTGGTGCGTGGTCATGTTCGATCTGCCGGTGGCGACGAAGAAGCAGCGCAAGGAGGCGACTCGTTTCCGGCACCTTCTTCTGGATGAGGGTTTCTGGATGGCGCAGTACAGCGTCTACGTCCGTTACTCCCCGACCGTGGCCGGCGAGCGTCGTAGGGCGAGTGCGATCAGGAACAACCTGCCGCGCGGCGGCGAGGTGCGGATCCTGTACGTCACCGACCGCGAGTGGTCGCACGCGCTCTGTTTCCGCAACGAAGAACCCGTCGAGGCTGATCCCGAGCCCCAACAGCTCATGATCTTCTGACCCCTGACGAGGCGTTTGCGCTGGTCAGACCCCCTTGATAGACGTTTCA # Right flank : CAGCGAGGTGACATATGCGCACGGCGGCGGGGACTCCGGCGTCGTCGGGCAGGGCCGGTGCCGGGCCGACGACGCCGCGGCGCTCCTCGGTCTCAGCGAGCATGCGCTCCTGGATGGCGCGGGAGGGGACGGTGGGGCGGGTCAGGTCGTTCAGGTCGCGCATGGCTCCATCTTGGCCCAGCCGGCCTCCCCGCGCTCAGTCGCGGGGTGCAGCGAGCCGGCGCGCCGCGTCAACGACAACGGCGCGCTGACGCATGTGCACCTCCTCGTCATCGAGAGGCCCGCACAGCATCCGCGCCACCTGGGGCACGGTGGACCACCAGCCGGTCAGCGACATAAGCATGAGCATGAGCGCCCCGGGGTCGACGTCCCCGGTCAGGACGCCGGAGTCCTGACCGCTGCGCACCCCGGCGATCTTGCGCTGGTAGTGCTCGCGCCGCAGCTCCTCCTCGGGTACCTCGTCGTCGAAGGCGAGAGCCTCCCAGCACAGGAGCCGGATG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTATCAAGGGGTCTGGCGACTGATTCCCAGC # Alternate repeat : GAAGTCTATCAAGGGGTCTGGTGACTGATTCCCAGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.40,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 52-3076 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKS01000042.1 Actinomyces oris strain WE8B-23 WE8B-23_contig042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 52 29 96.6 32 ............................T TCCTCGGGAATAAACGATCGCATTTCCTCGCG 113 29 100.0 32 ............................. ATAATCAATGGAAGTGATAAAGTAAAAGAATG 174 29 100.0 32 ............................. GAGTCGTCGCTAAACAATGCCGTACAGATTGC 235 29 96.6 32 ............................T GACTCGAATAGTTCTTCGTCTTCTAATTCATC 296 29 96.6 32 ............................G ACCCGAAAATGAATGAGGCAGTTGTTTTCGGT 357 29 100.0 32 ............................. CGTAGCACGCAAGTTGTTGTACCGAGACTGTG 418 29 96.6 32 ............................T GCGTCCTGGAGGCGTTTGAGCGCGGCGGTGGG 479 29 100.0 32 ............................. TTTCCCATTAATGATTTCAACGATCTTTGCAT 540 29 96.6 32 ............................G AACGGGCGTCTGGTCATGCGCAGGTGGGACCA 601 29 96.6 32 ............................G GTAAGCGAACTTTCCGAGTCTGGCGAGTACCC 662 29 96.6 32 ............................T GAATGCGCTGAGTATCGGGATAATAACGAACA 723 29 96.6 32 ............................G ATAGTTGCTTCAATGAACCGCGGATCAATCCC 784 29 100.0 32 ............................. CAAGATCGACACGGTTGAGGGAAACACAACCT 845 29 100.0 32 ............................. GGGCCAGGCACTTCCCCATCAATTGTCGACGA 906 29 100.0 33 ............................. CTGGGGCGTCATCGACGGAGACAAGACAGCAGC 968 29 100.0 32 ............................. AGGGCGGTGTAGTCGTTCTGACCGAGCAGGAC 1029 29 96.6 32 ............................G TGCTGCCGTCCAGGACGGTCTGCGACAGCGGG 1090 29 96.6 32 ............................G GGCTGTCGACCACCGAGAACCGGCCGTCGGCG 1151 29 100.0 32 ............................. AACCCTTCCCCTGGTGGGGGCGGCTGCCTGGC 1212 29 96.6 32 ............................T GTCCTTGGTGTTCCAAAGCCAGGGGTGCCGGG 1273 29 100.0 32 ............................. CGTGTCCTTGAGGTCGGCGATCCTGTCCCGAC 1334 29 96.6 32 ............................A AGAACCCCAAAATGAGCACCATCCGCAAGGCC 1395 29 96.6 32 ............................G GGTAGTCACCGCCCACTGGAGTAGTCCGAGCC 1456 29 96.6 32 ............................G ACGCTGAGGTTCACCTCCGACGTCGGCTACGA 1517 29 96.6 34 ............................T CGGGGCACCCCCACAACAGAACACCCCAGCCCTG 1580 29 96.6 32 ............................G ACAAGACGACGACTGAGCAGCATCTGGGCCGT 1641 29 96.6 32 ............................G GCCGCAAGGGCCTCCCGGTACCGTCCGGCGGC 1702 29 100.0 32 ............................. GTCTCCCGACTGGCCGGAGCCCAGGCCCAGGC 1763 29 100.0 33 ............................. GGGGGCTCAAGACGGGTGACGGCGTTGGCCTGC 1825 29 100.0 32 ............................. AACTCCGCGCTAAATGCCCTAGCAAGTTCTGC 1886 29 96.6 32 ............................G GCGGTGGCGGCGGCGTCAAGGGGGACAAGGGA 1947 29 100.0 32 ............................. TGAGCATCCAGGTCGTCCCTCAGGTTCGAGTC 2008 29 100.0 32 ............................. TCGTTCACGATGGTGGGCATCTGTGATGCCTG 2069 29 100.0 32 ............................. CCCTACGGTAGTAGTGGTGGTGGTCTAGGTGA 2130 29 96.6 33 ............................G GGGTTCTCGGAGTGGGGTACGCCCAGCCGCCGC 2192 29 100.0 32 ............................. AGGGTGTTTGCTCGCTTGGCCATCTCGGGCGC 2253 29 96.6 32 ............................T GAAGACGCAGGTGTGCTCGGTTACCACAGCCA 2314 29 96.6 33 ............................G GTCGCCCTGATGACCGCCCCCCCCGCAAGACGG 2376 29 100.0 32 ............................. CCGGGACGGCCGCGACGAGGTTGACCTAGGGT 2437 29 100.0 32 ............................. GTGAGGTGGCTCATCTTGTCCGCCGCCTCATC 2498 29 100.0 32 ............................. GGGCCGCTGTGGCAGGGGACCCTGTCCACGAT 2559 29 100.0 32 ............................. GCCGGGCGCGGCCAGGGCGTCAGCCACCAGGT 2620 29 96.6 32 ............................G GGAATGGGGAGAAGCGACGCGGGCCGCACGTG 2681 29 100.0 33 ............................. CGCAGTTCATCCGTCGGACCATCCGCATCCAGG 2743 29 96.6 32 ............................G TCCCCTGTGATGGAAAGCCCCTCAGCCCTTCC 2804 29 96.6 32 ............................G GAGTACTGCTGCTCAGGGTCGAGCAGATCGCG 2865 29 96.6 32 ............................G TCCACGTACCCCTCAACGTAGGGGGCGAGGCT 2926 29 100.0 32 ............................. ACGACGATGCGCTGCTCGTCCTCCAGCGTGTC 2987 29 100.0 32 ............................. GCGGTATGCGCGGCCGCACCGAACCTGATCGT 3048 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================== ================== 50 29 98.2 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : CGCGAGCGGGGATGATCCCAAAACTCTTGATGCTAAAAAGACGGCACTAGAG # Right flank : AAGAGCACTTGCCCAAGGAGGGGGAGGATCCTGTGAACCCTGCGCGGGTGGGAGAGTGGGAAAACGGCCTGTGTGCTTGAGGTGGAGTGACCGGCTCATGAGTCCTGGGGGTGCCTGGACTGGTGCCCACCTGGACCTCATCAAGCGGGAGGTCGGCTGCGTGGATGCCTCCGTTGTGGCGGACCCGGCTGCGAAGGAGCCCACCGCCACCGTCGAGAAGGTCACCGAGACGGCCACGGGGGCGGGCGAGGCCTGACTCAACACGCTCAGTCGATTACTTTACAAATACATCTGGTGTGATGCAGGATAAAGCCGTTGCTCGGCCACCAGGGTCTGGTCGGGCAACGGTGTGCTCTTGTTCCCCCAGGACCGCCTCTGTCATCTCCCTGGCCGGTACTCATCAGGCCGCCGACACGGCGGTCTGAGGGGCGTGCGCGTGTCCCTTCCCTGGGTGGGGCTGCCGGCACTCTCATTAAGAGGTATTGACAATGAGTGTCAAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 93858-94258 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKS01000011.1 Actinomyces oris strain WE8B-23 WE8B-23_contig011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 93858 38 100.0 34 ...................................... GGCTCGACGGCGGACATGAGGCGCATCCGCTTGG 93930 38 97.4 36 A..................................... TTGTCGGCGTGGCGCTCGGCCAGGGCGGTAAGCCCA 94004 38 100.0 34 ...................................... GTGGTGGAGATTCAGTCGAGTGATCGGCTTGTTG 94076 38 100.0 33 ...................................... CCTCCAGCTCGTGAATACGAGCTGCATTCAGGA 94147 38 100.0 36 ...................................... TCACCTCAACAGCATTGATGAGTCCCAGAAACATCC 94221 38 78.9 0 A..........................CCT...G.CGG | ========== ====== ====== ====== ====================================== ==================================== ================== 6 38 96.0 35 GGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : GGGCCGGGCGCATCGAAGCGGACGAATACGGTGGCGGGCACTCGACGGGGCTCCTTTGCGGCGTGATGTGTGGTGGGTGCGGCAGGCAGGCCGACGGCGGCGCCGGCTGGTGGCGGGAGGCCGGCGCAAGGCCGTCTACCTCATTCTTTCTGGCGACACTACCGGAGGGGAGGCGGCCTGTACGGGGAGTTCGAGAGGTCGACGTTCTTCAGCATCGACGGCCAGGAGGAGGCGGAGAGGACGAGAGCCGGCGGCGCGCCGGTCGAGCCACGGAAGCACAATGTGTCGGCAGTCATAGCCGGGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAGCTGGTGGCTGAAGGTACTCAAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGCGGTGCCGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAACCCCTAGAAGTGGCGCAACGACGCCACTCCCAGAAGCAGGG # Right flank : GGACTTACAGTCCACCCTCATCTCCTTTACGAGCTGAGCGGCCAGACGGCTCGGCGGAGGAAGCGCTCCCGATGTCGCACGGGCCCGACTCCTCCACCACCACACCAGGATGTGCCCGCAGTCACAGGCGGGAACGTCGATCTTTTGGCTTGACGTCGTTGGAAGCTGGTGGCTGAAGGTGCCTGAGGTGGAGTCGGTGGCGCTTGACGCCAGGACGCCGAAAAGTGTTTAAATAGGAGCGCTGCCGTCCGGTCCCGCAGGGCGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAATGGCGTAACGACGCCGCTCCCAGAGGCGGGGGTCAGAAAGCGGCTCTTCGTGTTTGGGGGTGTGGTAGGTGGGGCTTGTCGGCTGGTTTAGGTGGTTGTTGTCAGGTGGTCTTTGAGGCGTCCGGTGTGGATGAGGCTGCGGATGGTGTAGTTGGTGAGGTTGCGGAATCCTAGGGCGATGCCGCGTAGGTGCTCCAGGTGT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 96167-96715 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKS01000011.1 Actinomyces oris strain WE8B-23 WE8B-23_contig011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 96167 37 94.6 38 CC................................... ATCACCATGAGAGACACCACCCCTGTAACGGGGCTATT 96242 37 100.0 33 ..................................... TTTGATGGCGGGCATCGTGCCACCCCTTCGTGC 96312 37 100.0 38 ..................................... GTCTGGAGAATATCATTCGCGTACTGCTGCTGGCACTT 96387 37 100.0 35 ..................................... TCCGGGTCCGCCCCGAACTCTTTGAGGTCTCTCAC 96459 37 94.6 37 ...........A.........C............... TTTGCTGAGGTCTATCATCATCGCTTCGGCGTCGTTC 96533 37 94.6 34 ...........A.........C............... TAACCCATGCCGGTTTAGCATAGGGATCTCCTAA 96604 37 97.3 38 ...........A......................... ACGCACGGCAACGTGCATCACGTCTGGCTTCCAGCCAA 96679 37 73.0 0 .....C....G....A.G........CCT...G.C.G | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 94.3 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : GGCCCGCAGCCCCCACTCCACCGCCGAGCGGGTCAGCCGCGCCCGTGGCTGAGCCAGGCCGCTCGTGTCCTGCCTCCACACCCGGCGGCAGCCGGTGCAGGCGAAGCGCCGCACGCGTACCACCAGCTGCGTGGGCCTCCACCCCACCGGCACGTGGGCCAGGCGCCGGGCCACCGTCCCACGGGATACTCCCTGGGCCCCGCAGGCTCTGCAGAACGGGTCCTCAAACCCGATCGGCATACGGCACTCGATCACCGCGCGCTTGGCCGTGAGGTGCTGGCCCACAGCGGTCAGTCCCAGGGCATTCAGGCCCAGGAAGGTCGTCAGATCAGGGCCGGTGAAGGTAGTCTCAGGCACGTCGAGGTCTCTCGTGACGGTTGTCTAGCAGCTCCCATCATCGGGGGACCTCGACCCCTACCCACCGCAACGACGCACCCACCCCTCCACTCCACCTATGCACTTCAATAGGCTCCACCTACCACACCCTCAAACACGAAGAG # Right flank : GGACTTACAGCCCACCCTCATCTCCTTAACAAGCTGAGCGACCAGGCGGTTCGGCGGAGGAAGCGCTCTTGACGCCGAGTCCAGGGCTCGACTCCATCTCCACCACAGTAGGTTGTGTCCGCAGTCACAGGCCGGAACGTCGATCTTTTGGCTTGACGTCGTTGGAAGCTGGTGGCTGAAGGTGCCTGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGGCGTGCCGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCCCCAGCCCCTGGGAGTGGCGCAACGACGCCGTTCTCAGAGGCAGGGGTCAGAAAGCCCCCAGCACCAGAAGGTGCATTAAGACGTACACAGTGTGAATAGTGATCTTGTGGTCACGAGTGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACATGACGTTGTCCGAGTGACGCTCGGCCAGGCACGTGTCAGAAAGCACCCAGCACCAG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : GTCAGAAAGCAACCAGCACCACAAGGTGCATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 97047-97516 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKS01000011.1 Actinomyces oris strain WE8B-23 WE8B-23_contig011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 97047 37 97.3 37 ..........C.......................... GTACACAGTGTGAATAGTGATCTTGTGGTCACGAGTG 97121 37 100.0 35 ..................................... ATGACGTTGTCCGAGTGACGCTCGGCCAGGCACGT 97193 37 100.0 37 ..................................... GCGGGAGTCTGAGCACCGATCATCCGACCGTTTCCCG 97267 37 100.0 37 ..................................... TCAGCACGAACTCCAATCTCCAGCCTGTCACGCACAT 97341 37 100.0 35 ..................................... TTTTAGTGACGGAGTGTTCAAGCAGCGACGTCATT 97413 37 97.3 30 ........................A............ GGGAACGCGATCTTCATGACGTCCTCACCT 97480 37 81.1 0 ..A..G.G........G.........CA...C..... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 96.5 35 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : AGCACCACAAGGTGCATTAAGACTAACCCATGCCGGTTTAGCATAGGGATCTCCTAAGTCAGAAAGCAACCAGCACCAGAAGGTGCATTAAGACACGCACGGCAACGTGCATCACGTCTGGCTTCCAGCCAAGTCAGCAAGCGCCCAACGCCAGAAGGCCTATTGACAGGACTTACAGCCCACCCTCATCTCCTTAACAAGCTGAGCGACCAGGCGGTTCGGCGGAGGAAGCGCTCTTGACGCCGAGTCCAGGGCTCGACTCCATCTCCACCACAGTAGGTTGTGTCCGCAGTCACAGGCCGGAACGTCGATCTTTTGGCTTGACGTCGTTGGAAGCTGGTGGCTGAAGGTGCCTGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGGCGTGCCGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCCCCAGCCCCTGGGAGTGGCGCAACGACGCCGTTCTCAGAGGCAGGG # Right flank : CACTCTCTGCCGGTCGCCTCGCGCTCTCCAACCACAGGAGCCCTAAGTCCTGCCGGACCAACAGCGGAAGCCGGATGCGTCGACGGTCACGGGTGGGAACGTCGACCTTTTGGCTTGACGTCGTCGGAAACTGGTGGCTGAAGGTGCCTGAAGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGCGGTGCCGTCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCCCCAGCCCCCGGGAGTGGCGCAACGACGCCGTTCTCAGAGGCAGGGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACCTCAGTCGTTCTGGTAGATGATCTCCTCGTAAGCACGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACGACAGTGCCATCGAAGGTACGGAGTCTGTTTCTTGGCAGAAAGCACCCGGCACCACAAGGTGCATTAAGACGAGTCGGACCAGCCGTGCGACCATC # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 4 97812-98429 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKS01000011.1 Actinomyces oris strain WE8B-23 WE8B-23_contig011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 97812 35 100.0 38 ................................... CTCAGTCGTTCTGGTAGATGATCTCCTCGTAAGCACGT 97885 35 100.0 36 ................................... GACAGTGCCATCGAAGGTACGGAGTCTGTTTCTTGG 97956 35 94.3 39 ............G......C............... GAGTCGGACCAGCCGTGCGACCATCCGGGCGGGCAGCGT 98030 35 97.1 40 ...............................T... CTCCAATAGCATCCTACGACAAACCAAGAAGATTGAAAGG 98105 35 100.0 39 ................................... CTGTGGATGAACCCGCTCTGCCGGTTGTACGCGTACCGT 98179 35 100.0 36 ................................... TCCTTGCAGAACCAGTCGTACCAGCCGTTCTCTAGT 98250 35 94.3 38 .........T........G................ CATCCGTCTTGACAGCAGTCACGGTAGAACCATCAGGC A [98282] 98324 35 100.0 36 ................................... TTCTACCCCGATAGGGACATTCACTTGTGCCAGGGT 98395 35 94.3 0 .............................G...G. | ========== ====== ====== ====== =================================== ======================================== ================== 9 35 97.8 38 CAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : AACTCCAATCTCCAGCCTGTCACGCACATGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACTTTTAGTGACGGAGTGTTCAAGCAGCGACGTCATTGTCAGAAAGCACCCAGCACCAGAAAGTGCATTAAGACGGGAACGCGATCTTCATGACGTCCTCACCTGTAAGGAGGCACCCAGGACCAGAAGGCACATCAAGACACTCTCTGCCGGTCGCCTCGCGCTCTCCAACCACAGGAGCCCTAAGTCCTGCCGGACCAACAGCGGAAGCCGGATGCGTCGACGGTCACGGGTGGGAACGTCGACCTTTTGGCTTGACGTCGTCGGAAACTGGTGGCTGAAGGTGCCTGAAGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGCGGTGCCGTCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCCCCAGCCCCCGGGAGTGGCGCAACGACGCCGTTCTCAGAGGCAGGGGT # Right flank : CATATAACGGCACGTGCCGTGAGATCGCATGCAGATCTTCACCCTTATCCGCCAGCATCTCGATGACTTCCTCACCGAGCTCTCCGAGTCCCTGCGCTCAGGAACCTACGAACCCGACCCGCTCCTGAGCTTCGGCATCCCCAAGGGCACCTCCGGGGAGGTCCGCACCCTGCACATCCCCTCCATCCGGGACCGGGTCGTCGAGCGCGCGGTCGTCAACACGATCGTCCACAGGGCCGACCTCGCCATGTCCCCCTGCTCCTTCGCCTACCGGACGGGCATCGGCACCGACGACGCCGTCGACCACCTCGCCAGGCTGCGAGACACCGGCTACCGCTACGTGCTGCGCACCGACATCGAGGACTACTTCCCCAACCTCAGCATCGAGGACGCCCTGGCCGCCCTCTCCCCCATCGCCGGCTGCCCGCGCACCATCGACCTCATCCGACTCATCGCCCGGCCTCGGCGCGCCAGAGGCGAGCGGCGCACCTGCAACCGCG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 5 112394-113307 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKS01000011.1 Actinomyces oris strain WE8B-23 WE8B-23_contig011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 112394 37 100.0 35 ..................................... TAGAACATTCATGAGGTCTCACGTCCCAGTCACAC 112466 37 100.0 38 ..................................... GAAGGTCCTGAGTGTGTCGAAGCCGATCCAGCCGTCAT 112541 37 94.6 36 .........T......T.................... TCACTCTCAAACTGTGAGAACTGGAGCGGCACGTCG 112614 37 97.3 33 .........T........................... AGCTGGGCCTCCCACTCAGGGATCTCTTCGCCC 112684 37 97.3 36 .................G................... TGACTGCGTCAAGGCGCCCCAGAAGCTCGCTGATTA 112757 37 100.0 39 ..................................... TTGTCACGGTCACTCTCAGCAGCCAGCAGCTCGTCAACC 112833 37 100.0 34 ..................................... TCTCGGTGTGAGTCATCCATCGGAACGACTCGAC 112904 37 100.0 37 ..................................... CTTCAAAGACCTCGGCAATCCTGTCAATGACATCCTG 112978 37 100.0 35 ..................................... TACTCAGCAACATGGCACTCCTTATAGATGGCATA 113050 37 100.0 37 ..................................... GAGATCCGGAATATCATTAAGAAGCCTCTCGAGCTTC 113124 37 100.0 38 ..................................... TGGTACACCCACCCAGGCAGCTACAGCAACCAGCCAAA 113199 37 94.6 35 ...........T.............A........... TGAGGTATTCACCTCCTCTCCTCCGAAGTTTCGGC 113271 37 78.4 0 ........................A.CCT...G.CGG | ========== ====== ====== ====== ===================================== ======================================= ================== 13 37 97.1 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : CGCCTTGGCGGTCCTGACCTTCATAGGCCTGCCGCTGAGCGTGTTCCTGGAGATCTGGTCCAACTGGGAGGCCGCCAAGGGTATCGCGGTCCGGCACCAGAGCATCGGCGGCTGGGACGCGGGATGGGGGTGGATTCTTGGCTTCGGTCTTATCGGGTCGGTCCTCATCGGCGGCGGGATCTGGCTGCTCGTTGACAAGGTGGGCGGCCGGGTGGCTCGGCGTGGGAAACGCTCCTGACGCCGAGTCCAGAGCCCGGTTCCACCTCCACCACACCAGGATGTGCCCGCAGTCACAGACGGGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAACTGGTGGCTGAAGGTGCCCGAGGGGGCGTCGGTGGCGCTTGGCGCCAGGACGCCGAAAAGTGGTTAAATAGGGGCCGTGCCGGCCGGTCCCGCGGGGTGCCTGCGGAGCCGGTGGCGCTCCACCCCCCCCGGAAACGGCGCAACGACGCCGCTCCCAGAGGCAGGG # Right flank : GAACTTACAGTCCACCCTCATCTCCTTTACGAGCTGAGCGGCCAGACGGCTCGGCGGAGGAAGCGCTCCCGATGTCGCACGGGCCCGACTCCTCCACCACCACACCAGGATGTGCCCGCAGTCACAGGCGGGAACGTCGACCTTTTGGCTTGACGTCGTCGGAAGCTGGTGGCTGGAGGCGCCCGAGGGGGCGTCGGTGGCGCTTGACGCCAGGACGCCGAAAAGTGTTTAAATAGGAGCGCTGCCGTCCGGTCCCGCAGGGCGCTTGCGGAGCCGGTAGCGCTCCAGCCCCTGGAAATGGCGTAACGACGCCGCTCCCAGAGGCAGAGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACTGAGAACCTCGCGCCTATATGCCCTAACGCGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACTGGTAACGAGAATCTCATATTCGGCAACGGTGCGGGGTCAGAAAGCACCCAGCACCAGAAGGTGCAT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 6 113636-114029 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKS01000011.1 Actinomyces oris strain WE8B-23 WE8B-23_contig011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 113636 37 100.0 30 ..................................... TGAGAACCTCGCGCCTATATGCCCTAACGC 113703 37 100.0 36 ..................................... TGGTAACGAGAATCTCATATTCGGCAACGGTGCGGG 113776 37 100.0 35 ..................................... GAACCTCCGAGCGACACCCGAGTGGACCCCAATCA 113848 37 100.0 35 ..................................... CGTTGTTCCTTCTTTGCATGGTATCTCCTTCCATG 113920 36 97.3 36 ................................-.... CATTTATCCACGCCTCGGTGGCCCTGAGGTACTCCA 113992 36 78.4 0 AC........C.............-.......T.CGG | CT [114019] ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 96.0 35 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : CCAGCACCAGAAGGTGCATTAAGACTGGTACACCCACCCAGGCAGCTACAGCAACCAGCCAAAGTCAGAAAGCATCCAGCACCAGAAGATGCATTAAGACTGAGGTATTCACCTCCTCTCCTCCGAAGTTTCGGCGTCAGAAAGCACCCAGCACCAGAAAGCCTATTGACGGAACTTACAGTCCACCCTCATCTCCTTTACGAGCTGAGCGGCCAGACGGCTCGGCGGAGGAAGCGCTCCCGATGTCGCACGGGCCCGACTCCTCCACCACCACACCAGGATGTGCCCGCAGTCACAGGCGGGAACGTCGACCTTTTGGCTTGACGTCGTCGGAAGCTGGTGGCTGGAGGCGCCCGAGGGGGCGTCGGTGGCGCTTGACGCCAGGACGCCGAAAAGTGTTTAAATAGGAGCGCTGCCGTCCGGTCCCGCAGGGCGCTTGCGGAGCCGGTAGCGCTCCAGCCCCTGGAAATGGCGTAACGACGCCGCTCCCAGAGGCAGAG # Right flank : GGGCTTGCCGTGAGGTGGTTGCCAACAGCGCCAGAAAACGGCCAGTCCAACCGCCAGTCCCTTGAACAGGCCCTCCAAGCCGACCCGAACCACCCCACCACCACGGGCGCCGTCCTCCTCGACGACCACCAAGGCCTCCACCCCAGGTGGATTCGTGCCAGGTGAGCTCGCAGGATTCCAGCAAGCATCACGCAGTCGAAACGCCTACAGCGCAGGGAACGGCCAGCAGACGCAAAGCCAGGCGGCCGCGCCAAGGAGCCCAGCCGCCCGCTCGTCACCCACTCACGGGACACAGTCAACGCGTCGGCAGACCAACATCCATGTCCCACACCAGCATTGCTTCAGCGGCGACGCAGAGGCAGGGCCATGACGCCACCGAAAGAACAGTTGCCAACGCCAGCCTTTAACTTATAACTTAAGTACGTGACTACGATTCAGGAGGCCCGGCGCAGCCTAGGCGTTGCGCAGAGTGAGCTAGCACAACGCCTAGGGGTTTCTGC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 7 116051-116521 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKS01000011.1 Actinomyces oris strain WE8B-23 WE8B-23_contig011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 116051 37 100.0 36 ..................................... CATAATGTTTGTCATCGTTGTCTCCTTGCTTGACCT 116124 37 100.0 35 ..................................... TCCTCAGCCTGGGCACTGACACCGAACCAGGTCCC 116196 37 97.3 35 ......G.............................. GTTTAGAGGTTGTCTTCGAGGACGATCTGTACCTT 116268 37 94.6 35 .........C.T......................... TCTCCCGTGAGCAGGTATCCCACGCTGGTATCCAG 116340 37 97.3 36 .........C........................... CTTCAGCCGCAGCTGGTTCATAGTCATTCTTCATGC 116413 37 100.0 34 ..................................... ATCTGCGCCTGCAGCGCGGCGATCTGGTTCTGGC 116484 37 78.4 0 .........C...............CCC....C.CGG | T [116513] ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 95.4 35 GTCAGAAAGTACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : GAAGAAGCCAAGGCACGAGCACAGTCCTTTCTTCATCACTGGAAAGACAGTAAAACATCAAGGTCCAGACCAACCGCAGGCTGCGGATGAGGTGGATCGTGTGATCGAGCTCGACTCGGAGGCGGTCGGGTCCATCGTCTCCGAGCAGTGGACCATGATGACCGACGCCGACAGACAGCTCGAGGCCTTCCTGACCCACTTGCTGGACGGCCAGGCGGCTCGGCGTGGGAAACGCTCCTGACGCCGAGTCCAGAGCCCTGCTCCATCTCCACCACAGCAGGTTGTGGCCACAGTCACAGGCGGGAACGTCGACCTTTTGCTTGACGTCGTCGGAAGCTGGTGGCCGAGGGTGCCTGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGAACAGTGCCGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTAGCGCTCCAGCCCCTGGAAGTGGCGCAACGACGCCGTTCCCAGAGGCAGAG # Right flank : GGGCTTGCCGTGCGGTGGCTGCCAACAGCGCCGGAAAACGGCCAGTCCGATCGCCAATCCCTTGAACAGGCCCTCCGAGCCAACCCGAACCACCCCACCACCACGGACGCCGTCCTCCTCGACGACAACCAAAACCCCCACCCCAAGTGGATTCTTGGCAGGTGAACTCGCAGGAATCCAGGAAACGTCACGCAGCCAAAACGCCCCTACCGCAGGAGCCGGTCAAGCAGACGCAAACCAAAACGGGCGGCACCAAGAAACTCGGCGGCAGCAGCCCACTCACCGTTCATTCCTCGCCCGCCCACGAGCGGGCAGGCAGTCATGCGACCAGGCGGTCAGGTGGCCGGGCCGACAGCCCAGCCAAGCCGCCCCGCGCCCCGCGCGCCGCCCCCGCTTCAGGCGCGGCGTAGACGCAGGATGACGAGGCCGCCGGACAGCAGGATCGCCGCCACGGACAGCACGCCGATCGCCACACCCGTCACCGGCAGCCACCGCTCCCG # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGTACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //