Array 1 1961741-1962700 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP032401.1 Streptococcus iniae strain GX005 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1961741	    36	 100.0	    30	....................................	AGATAGTTGGTATTTAACTAATCCGTCAAT	
   1961807	    36	 100.0	    30	....................................	TTTTACTACGTTCTGAAGCGTTTATCGGAT	
   1961873	    36	 100.0	    30	....................................	TTATACCACTAAAAAACCACTGCGGGACAG	
   1961939	    36	 100.0	    30	....................................	TTAAATAGATCCCAATATTCTAAGTCGTAA	
   1962005	    36	 100.0	    30	....................................	TTGTCAGTCTGTGATTGCTTAATCCCTCCT	
   1962071	    36	 100.0	    30	....................................	CCTCACCATCAGGCAAAGACCTTGATACCT	
   1962137	    36	 100.0	    30	....................................	GTGTTCGCCGAATAAGTAGAATTAAGAAGC	
   1962203	    36	  97.2	    30	..........................C.........	CCTGCAAAAGATTCATATGCGATTAGTTAT	
   1962269	    36	 100.0	    30	....................................	CAAGTCTTGCAACAACAAGTATCCACTACA	
   1962335	    36	 100.0	    30	....................................	ATATATATCAATGGAAATACCAAAACGTTT	
   1962401	    36	 100.0	    30	....................................	TTAATTCCTTGGTTGTCAGTGTAATAGATA	
   1962467	    36	 100.0	    30	....................................	CGGTTTAGCTGCTCTTGAGAAGATTGTATT	
   1962533	    36	 100.0	    30	....................................	TTAGTATTAAATATAATATCAACACCTTTA	
   1962599	    36	 100.0	    30	....................................	TACAACAGTACCTATAAGTGTGGCTACACC	
   1962665	    36	  75.0	     0	................T.....TG..T.T.TTT..G	|                             	
==========	======	======	======	====================================	==============================	==================
        15	    36	  98.1	    30	GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC	                              	       

# Left flank :   AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG
# Right flank :  GGCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT

# Questionable array : NO	 Score: 6.16
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:63.89%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//