Array 1 160283-161272 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGAC01000007.1 Erwinia persicina strain CFBP13511 contig-100_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 160283 28 100.0 32 ............................ ATTCGATACCATCCACCCAGTGCGCTGTTGCT 160343 28 100.0 32 ............................ AAGCCCAGCGCGGCGATCAGCATGGCCTACGA 160403 28 100.0 32 ............................ GCACTGATGAGAACAACGGCGACCTTCCTGCG 160463 28 100.0 32 ............................ TTCGCCAGTCAGGAACCAGCCAAAGAAACAGG 160523 28 100.0 32 ............................ TTACAGCAGAGACAAAGAAAAGCCTGCTGGAT 160583 28 100.0 32 ............................ TTGCGCTATGGGTAACCGAATAATCCGCCACT 160643 28 100.0 32 ............................ TCGGCTGCAGGAACTACAAACCGTCGCCGTTT 160703 28 96.4 32 A........................... ATAATGGGAGCCGGGAAAAATATCTTTCGGCA 160763 28 100.0 32 ............................ TTGCCTTGTGCGGCATTGCTGCGCCCGGAGCA 160823 28 96.4 32 .......T.................... ACGCTAATCCCCGCAAAGCATAGCGGACGGGC 160883 28 100.0 32 ............................ ACGGTGTCGAACCGCGAGGCCGACTTGAGAGA 160943 28 100.0 32 ............................ ATGTCGCCATTGTCTTTGTACTGGTACTGGAC 161003 28 100.0 32 ............................ GGTGATCACCCCGCTGATTAACCGGCTGACCG 161063 28 100.0 33 ............................ ATAACCCATCTGGATCAGCGTTGGGCACACCAA 161124 28 96.4 32 ..........A................. CAGCAGCTGGTTTATCTGGTCAGGCATCAGGA 161184 28 100.0 32 ............................ TTTAAAAGGCATAAACCTATACTCCCTGCATA 161244 28 96.4 0 .......A.................... | T [161270] ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGCTTACGATTTCCATGAGGCTAACAAGATTAACGGTGTTGCGTTTAACATGGATAAGCCATCGTTTGCAGTGAAGCAGGGAGCCTTCGAGAAATGGACCGTTTCCGGCGAAGGCGACATGATGCTGCATCCGTTCCATATTCATGGCACCCAGTTCCGTATTCTCTCTGAAAACGGCAACCCCCCTGCGGCCCACCGCAGCGGCTGGAAAGACACGGTGCGTGTCGAAGGCTGGCGCAGTGAGGTACTGGTGCGCTTTAATCATCAGGCCGACGCCGCCAATGCCTATATGGCCCACTGCCACCTGCTGGAGCATGAAGACACCGGCATGATGCTCGGCTTCACCGTGGCGTAATCTCCGGCACGGCAGACCCTTTTTTTGAACCGGTTTTTATCTTACTGATTATTATCAGTATTTAAATAAGGTAAGAAAAAAGGGTTTTGCCCGAACCTCGTGATAAAAGTTAAGGAAGTCAACGGGGTCGTGACGTAAGCTAACG # Right flank : AGGGATGAGAGTTACAGAGCAATAGATAATCGGAACATTCAACGACAGTCGACAGAAAGACGGGGGATGGCAGGTAGTGAAAATCGTTTACTCCTCTACATAGGTGGCGATCAGCGATCAACCCGCAGAGGTTAAACGTTGTATGAGTATCTCGCTCATCACCGCCTGAAGCGTTATAGCCCGCAGAAAGCCTGATAAGAAAAGCGGCGATTATCGCTTAACTCAACCACGCATAAGGAGGATTCTCACAGAAATGCACTGTTTCTGTACGGAGATCATGGTTGTCGCGGTAGATTAAGATTATCTGTATTCCTTTGCGTAGATAAAATAAAGTGCGGTAGTAATGGAATCCAGTTAATGCGGTGATAATTATTAGCATGAAGGGTCTGACAGCATACGGGAATTAACCGAACGTATAAAAAGGATGGGTGACACGGATGAATTCAAATGGAAATGATTAAACCTTCCGATTTAAAAACAATTCTCCATTCAAAGCGTAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 170066-171352 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGAC01000007.1 Erwinia persicina strain CFBP13511 contig-100_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 170066 28 100.0 32 ............................ GGCAGCGCCAAAACTGATAGCAAAAAAAACTC 170126 28 100.0 32 ............................ AATAACGGAAAAAATGAAGTACGCACAGGCCG 170186 28 100.0 32 ............................ GCATTGCATACAACGGGTATGGCGCTTTCTGG 170246 28 100.0 32 ............................ AGCCAGCCGGATAAAATCCGGTGGCCGGAGGT 170306 28 100.0 32 ............................ TTCAGCGTATAGGATTCACATGCCTCGGCCCA 170366 28 100.0 32 ............................ CAAGAAATGGCATGCCCGCAAAGTCATTCGAA 170426 28 100.0 32 ............................ GCACTGGCTGGCGCTCATTAATCGAAACCCTT 170486 28 100.0 32 ............................ CTCCGCTTCCAGATTCCAAGTTCTCCCCGGAA 170546 28 100.0 32 ............................ AAGAGGAACAGGCAATGTAGTGGGAAGAATAA 170606 28 100.0 32 ............................ GGAGACAATCACTGTCGGCGCCATGGCTATCC 170666 28 100.0 32 ............................ CAAGACCTCCCGCAATAATCCGCATAACCATC 170726 28 100.0 32 ............................ GGTAATCTTGCTTCATACGAGAACGAGGCCGG 170786 28 100.0 32 ............................ TTAACGCCATCTTCATCAGGCATCCGGCGGCA 170846 28 100.0 32 ............................ ATACAAATTAAAGGCCGTAGGTTCTCCATATA 170906 28 100.0 32 ............................ CATTACGCGCTCACTCGAGGCAACACCCTCGG 170966 28 100.0 32 ............................ GAAAGGTGGCGAAGGATAGGGTTGAAAAGCCC 171026 28 100.0 31 ............................ TGCACCAGACGGTGCTGCGTCCGGCCCGCAG 171085 28 100.0 32 ............................ GTGAGTTCTGCCAGCGCATCTCCTTCGATAGA 171145 28 100.0 32 ............................ AGCTTCCACCCATCCGGTACGCTGTCCGCTGG 171205 28 100.0 32 ............................ TTAGCCAGGCCCCCGGCAATCTCCATCTTGAG 171265 28 100.0 32 ............................ ACTTCCTAAAATGGAACTATTCCCACCGCCTG 171325 28 96.4 0 ...A........................ | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGGATCTGACGACCCTGAAGCAGAGCAGCTGGCTGCAGGGGGTGCTGGACTATATCTCCTGTGGAGAGATAACTGCTATCCCTCAGACGGTATCCTGGCGAGTAGTGAGACGCGTTCAGGTAAAAAGCAGCGCGGAACGCCTGCGGCGTCGTTCCGTCAGTAAAGGGTGGCTGAGTGAGGCAGAGGCACAGCAGCGCATCAGTGTCTGTGACGAGCAGCGTAGTCATTTACCCTATTTGCTGATTAAAAGTGGATCTAACGGTCACGCTTATCCACTATTTATTGAACATGGTCCGATCCAGTCATCGCAGACGACGGGCAGTTTTAATTCCTATGGTTTAAGTGCCACGCAAACCATCCCCTGGTTCTGACCCTTTTTTTGCCGCTGGTGCTAACCTATTGATTTAATGAGGTGCTGGCGGCTCGATTAAAAAAAGGGTTTTTGCGCGTCAATTTCTTAATGTTATGGTTATTAAGGTTTTTTAGTGTTTTTATAACG # Right flank : AACAGGGTGGTAATATAGCGTGAAAGCGAGTGGAACGCCTTACAGGACGTCTCCGGGGAAGAGGCATTTCGCAGGGGCCGATCAGCGATCGACCCGCGACCTTACCGCGAGAGCGTTACGCCAGCGACAGCCGTACGTCCTCGATTAAATCCTCTTTATTCTCTATGCCAATCGACAGGCGAATGGTGGAGGAGGTGATGCCGAAACGGTTGCGTACTTCGATCGGTACGCCGGAGTGGGTGGTACTGGCAGGATGGCTGGCAAGGGATTCGGTGCCGCCGAGGCTGACCGCCAGTTTAAACAGCTGCAGAGTGTTGAGGAAGCGGAATGCCGCCGCCTCACCGCCGCGAATATCAAACGAGAACGTCGAGCCGGCACCGCTGCACTGGGTGCTGAACACTCTGCCTGCGGCAGAGGCCGGGTCAAGGAACGGCAGGTAGTGCACCTTTTCCACCTGTGGATGGCTTTGCAGGAAGGCGGCCACCGCGGCGGCATTATCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //