Array 1 5055-5944 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKKC01000015.1 Bacillus mycoides strain 7 NODE_19_length_94472_cov_48.7563_ID_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 5055 32 100.0 35 ................................ ATATTCGGGATGAACATCTATTTTCAAGACGTCAT 5122 32 100.0 34 ................................ ATCAAGCTTGCTTAATAGTTTTTTGAAGTAATCC 5188 32 100.0 35 ................................ AGTAAAGATTCCTCCTTAACTGAGGATTCGATCAT 5255 32 100.0 34 ................................ TTTCCAAAAAGGGAAAACAAAACCACCTACAGTA 5321 32 100.0 33 ................................ TCATTTAAAAAACCCAATTAGCACATGCAATTT 5386 32 100.0 34 ................................ ACGTATACGAGGTATTACGAACGTTCTTGTTAAG 5452 32 100.0 34 ................................ ATCTTTATAGACAAAGAAAGTGGGAAGCACTTTG 5518 32 100.0 34 ................................ TCTAACGATTGCGCAAGTCGTACTAAAAGAAAAG 5584 32 96.9 34 ........................G....... TACGTTACAAAGTCACCTATGAAAATGTAAAAAT 5650 32 90.6 34 ..............TA.....G.......... CTCCTGAGTTTACCTATCGGTACATACTGGACGA 5716 32 93.8 34 ............T........C.......... AATCATCCCCTTAACATTAACCGCTCATGCCCAC 5782 31 78.1 34 ..T......T..G.T..-...G.A........ CAGTGTTGCTACGCTCAGTGGGAATCCCTAGATT 5847 32 78.1 34 C..T..A.....GCT.........G....... GTTTATGCTATTCCTACGCTCCACAATTCTCATT 5913 32 90.6 0 C...........G......T............ | ========== ====== ====== ====== ================================ =================================== ================== 14 32 94.9 34 GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Left flank : AGATGAGTATCCACCATTTTTATGGAAGTAGGTGTAACATTTGCTAGTATTAATTACGTATGATGTAAGCACTGTTGGCGGTGCAGGACAAAAAAGACTGCGGAAAGTTTCAAAAGTATGTCAAAATTATGGTCAACGAGTCCAAAACTCAGTGTTTGAATGTGTTGTTGATGCAGCTCAACTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGACGAAGATAAGGATAGTCTCAGATTTTATCAGTTAGGTAATAACTATAAAAATAAGGTTGAACATATTGGTGTAAAAGAATCAATAGATTTAGAAGGTCCTTTAATTTTTTAGGTGCGAACGTATAGCACACATGAAATTCCTTGTACATTCGCACCTGAATTTTCATAATTTATGAGTAAAGTTTATGATTTTCTATGCAAGTTTCTTTATCTAATAAAAAAACTTGCATATTTTTGAACAGAATTAACGTATTTGTGTAGGATTTTGAACACAAATCGGA # Right flank : TCTGTCAATTTCTTAACGAGGACTCGGAGCGTAAAATCACATCTCTTGTAGGATTGTGATTAGATTAAACAAATTGAGTTAAGAATAACTTTTGCAAACTTTTAGAATAAAAATGCTTTTAGAATGCTAAACAAATTATATCCAAATCGTTATACGAGAGATATGCTTACTTCCTTACGACCAATGAGATAAGCAATCGCTTATTTACATCAAATTAGATACGTAAAATTTTTTGAAGCAAATTTTCAGTTTATAAAAGGAGGTTAATAATGAACAATAATTTCATGATAAAAATTAAAAACTTAATATCAAGTAAATCCGAAGGAGAATTTTGGGATTTTAAACAAGAGTGGCATAGAGACAATGAGAGATTATTACATGATATTCTCTGTTTTGCAAATACAGTTCATGAAAAAGACTGCTATATAATAATTGGAGTATCAGATAATGGAGATATAATTGGGATAAATAATGAAAATAGAAGGGAACAGTCAAGTGTA # Questionable array : NO Score: 9.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 8038-8307 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKKC01000015.1 Bacillus mycoides strain 7 NODE_19_length_94472_cov_48.7563_ID_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================================================== ================== 8038 32 100.0 75 ................................ TCGAATGCTATTACTCATGAAGGAGGTGCATGGATTGAAATTTGGAAGTAGTATGGTCTGAACCTGTCATGATTT 8145 32 100.0 34 ................................ CAAACAGAAGCATAACAACAAATAATAAACTAAA 8211 32 96.9 33 ...................T............ GCAATTGGTATTCCGTTATCATTCTACATTATT 8276 32 78.1 0 .........T.CG..........A...A.G.C | ========== ====== ====== ====== ================================ =========================================================================== ================== 4 32 93.8 48 GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Left flank : TAATTGGCCAAATAAACAAAACATACACCGAAAACAACAAGACACAGGTCCTTATCGATATAAAGACCCTGATTATTCTTAATAAGTAGGACTCCTTTGGCGAAAATTTTCGAAAACATGTCAAAATTATGGTCAACGAGTCCAAAACTCAGTGTTTGAATGTGTTGTTGATGCAGCTCAACTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGACGAAGATAAGGATAGTCTCAGATTTTATTAGTTAGGTAATAACAATAAAAATAAGGTTGAACATATTGGTGTAAAAGAATCAATAGATTTAGAAGGTCCATTAATTTTTTAGGTGTGAACGTATAGCACACATGAAATTCCTCGTACATTCGCACCTGAATTTTCATAATTTATGAGTAAAGTTTATGATTTTCTATGCAAGTTTCTTTATCTAATAAAAAAACTTGCATATTTTTGAACAGAATTAACGTATTTGTGTAGGATTTTGAACACAAATCGGA # Right flank : CTGATAAGATGCTTGATAGTAATTTAGTGTCTCTGTTGGAGTAAGAGGACCTGCTTCAATTCATACAGCAACTAGTGTTGATCCAATTGACATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCCTGAGAAGGAGAAGGATAAAGGTTCAGATACGATGGGGATGAAGCAGCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACACAATTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAAAAGATTAAAAATGCACTAGTTACATTGTTTGAAAATGATGCGTCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGAGCATAATTCAAAACTTGGCCAGTACTCTTCCGCAAAAGTATACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAAACAATTGATGACTATAACATTTTGGTAAATGAATTAGATAGCTTAAAAGTTGTGATTA # Questionable array : NO Score: 7.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:-1.34, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 36561-37297 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKKC01000022.1 Bacillus mycoides strain 7 NODE_23_length_87603_cov_28.3633_ID_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 36561 26 88.5 40 .......A....AA............ TTACCATAAGACAGTGAAAGTGGTTGTCGCGTTCATTTGT 36627 25 88.5 39 ...........-A........T.... GAAACAAAAAGGCACTTACTATGATCGTGTACTGTGAGT 36691 26 84.6 38 ........G...AA.......T.... GTATTTACTCGGAAGAAACGACAGTGGTATAACATGAT 36755 26 100.0 38 .......................... TGATCTCATGGGATACAGTACAATAGCGGTAGGTGCTT C [36758] 36820 26 88.5 39 ............A.A......T.... TTACTGTTATGGCGACTATACTTATGTCGACAAGATAGC C [36823] 36886 26 88.5 38 C..........AA............. TTATGAGTAAATTTCCAAGCCATGCTTAGTATTTTGGT 36950 26 84.6 38 .C..C......AA............. TATGCGTTCAGTTTCCCTTTTGTCAATTCTTTATGTGT 37014 26 88.5 38 .......A....A.A........... GAACGGTCGAGGGTTAGGAGAGCATGCCGTTAAAACGA 37078 26 96.2 39 ............G............. TATAAATAACGAGAAATTACCTATTGTATGTGGAATTGT 37143 26 88.5 39 ......A.....AC............ CTACACCCAGCGTTTTAATTCTTGCTTGCTTCGATCTGG 37208 26 84.6 38 .....T.A...G.A............ CTTAAGTATCAGGACATCAATGTAGATTTGGTTTCTGT 37272 26 88.5 0 .......A...G.A............ | ========== ====== ====== ====== ========================== ======================================== ================== 12 26 89.1 39 TTTATCTGAACTTTGTGGGATATAAA # Left flank : CTTCCACTAAACGATATGAGAAATACAGAGGCACAAAGGTTGCTGCGTGATATTGATAATTATCAAGTAATTCCCTGTTCTATATATAGAGAGAATCTTGATTTATTTACTACATTTAAACAGGAAAAAGATTCTAGACAGCGAAAAGTATTACGAATGCAAATCGAAAAGCTTACAACCTCTATTTCTAGAAAACAAGTTCAACGATACGGAATCGAAACAAAGGAAATTGATATTCCTGGGCTTCAATACATTCACACTTTAAATTGTAAGTATGATTTTGATAAAGAAAAGAGAACAGGAACAGGAATTATACTTCCGTAATTTTGTAGTGATCCCCGCTATTATCAAACGTGTAGAAACTCTTACTATGATAAGGAATTTCAGCATATTGTAAGAGAGTACAAAAACACGATCGATGATTTGTTGCAAAATATGGATTGATACATATGATTAAATGTTTCTATCATTAGGTGTACCATCCGTATATAGATAGGGGG # Right flank : AAGTTTATAATGAAACCATAGAAATAGAGTCTTAATTAAAAAGGGCTCTATTTCTATGGTTGCTACCTTCAAATTTTTTATCTTTCATTAAATCAATTTCACATTCAAGTTCTTTGGTTTCTATATTTAAAAAGTCCATTGTCATTGCAAGAACTTTTCCATCTTTATTTCTCTTAGATCCCCATAAACGAACAACCCTATTAATTTTACTATCTTCATATATAATTTGAACAGTTCTTAATTCTTCTCCATCCACAAATTCACGATGTATCCAACACTCTTTAAATTCCAAATTCTCATCGGATTTATGCATGTTATAATTCAACATTACTGCTTCTAATTCTGGAAACCCCAAGCCTTTTTTCTCTAAACAAATATACTCAAAATCCCAGAACTCTCTAAAATGATAGATAAGCTCTTTTTGACTTTTCATCATAACTCCCCCAACCATAATTTTTTTAAGCGTTATGTATATTTGATATCTGTTACATGATTAATTT # Questionable array : NO Score: 3.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTATCTGAACTTTGTGGGATATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.08%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [11-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 91144-92468 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKKC01000014.1 Bacillus mycoides strain 7 NODE_17_length_96039_cov_47.8711_ID_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 91144 32 100.0 35 ................................ TTGACAGGTTCTGTTATAGCGCGTTCGATACTCCA 91211 32 100.0 33 ................................ AGACATTAAAGAAACGTCTGTCGCCATCCTATA 91276 32 100.0 34 ................................ ATAGATCCGCTCTCTGCTCCTAAATCATCCAGTA 91342 32 100.0 35 ................................ ATATATATCGGCTGATGGTGACCAAAGTAATATTG 91409 32 100.0 34 ................................ TTGGTATACGTGATGAGGAATTACAAGATACTTG 91475 32 96.9 33 ....T........................... GTATAAACGTATTAAGGTTTTCGTTAAAAAACA 91540 32 100.0 33 ................................ TGTTTTCCGGTACTCGATGAAATGGCCCATCAA 91605 32 100.0 34 ................................ TGTGAATTTCTCATTTTTTAATGCTTGAATAAAA 91671 32 100.0 34 ................................ TCACCCCCTTATAAGAAAACATCCATCCCCAAAC 91737 32 100.0 34 ................................ AGAAAAGGTAATGCAAGAGAAAATTGGTCGATAC 91803 32 100.0 35 ................................ ATACAATGGCTTTTTAGCCTTACAAGAATTATCAA 91870 32 100.0 32 ................................ TTTAATATGAGCGCCCGTTTCAGGATATTTAG 91934 32 96.9 34 .........T...................... AGAAAAGGTAATGCAAGAGAAAATTGGTCGATAC 92000 32 100.0 35 ................................ ATACAATGGCTTTTTAGCCTTACAAGAATTATCAA 92067 32 100.0 32 ................................ TTTAATATGAGCGCCCGTTTCAGGATATTTAG 92131 32 96.9 34 .........T...................... AGAAAAGGTAATGCAAGAGAAAATTGGTCGATAC 92197 32 100.0 35 ................................ ATACAATGGCTTTTTAGCCTTACAAGAATTATCAA 92264 32 100.0 32 ................................ TTTAATATGAGCGCCCGTTTCAGGATATTTAG 92328 32 90.6 34 .........T..........A..........A ATATGGCAATTATCAAATGAAGAGGAAGGCAAAA 92394 32 96.9 9 ....................A........... GAATCATGT Deletion [92435] 92435 32 90.6 0 ..A...T......C.................. | T,T [92441,92446] ========== ====== ====== ====== ================================ =================================== ================== 21 32 98.5 33 GTCGCACCTCTTGTAGGTGCGTGGATTGAAAT # Left flank : AATTGAAGAGAAGCCAATTAGTATTTTAAATCAAGAGACTCCTAATAGCATCGAGTTTTATATTGAAAAGATGAATACGTATAAAGAAAAGAATAATAAAAGTATACGTGAGTTAGCGAAAGAAATTGATATTTCGTATTCAACGCTTTCTAGGATGTTATCCGGTAAAAGGAAACGATTAAATGATGATACAAAGAATAAGCTTGATAAGTGGATAGAGAGACAAGAGGTAGTTAATTTATTGTAAATTATGACTTAATATATATAGGCTATTGTCGAACATATTGGTGTAAAAGAATCAATTGATTTAGAAAGCTCTTTAATTTTTTAGGTGCGAACGTATAGTACACATGAAATTCCTAGTACATTCGCACCTGGAATTCTCATAATTTATGATTGGAATTTATGATTTTTATACAAATTACTTTATAAAATAAAAATATTTGTATACTTTTGAATAGAATTACCGTATTTGTGTGTGATTTTGAACACAAATCGGG # Right flank : TATCACAAGATTGAGGAAGAAGGGGTTTTTAAGGTAATACTTTAACTTCAAAACAGTCTTCAGCTTATTAGATACTCAACTGGAAGTATCTATCTGCAGTATCTAACACACATGTTAAAAATATAAATTGGAGGGAGATTGAATGACCTACATTGCTCATATCCGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCGGGCATGCTCCATGATTTAGGTAAATATACCAATGAGTTTAGAGAGTACATATTGGAAGCAGTAAATAACCCTAATTCTTCATCTAAAAGAGGGAGTGTTGATCATTCAACTGCAGGTGGAAAATTGTTATATCAATTATTCCATACAGAAAATATCATTCCTTATAAAGGAATACTATCTGAGATAGTAGGAAATGCTATTATTTCCCACCATGGATACCTTCAAG # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //