Array 1 27641-28550 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIKX01000234.1 Dolichospermum sp. UHCC 0259 scaffold234_cov0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 27641 37 100.0 37 ..................................... CAAGATTATGGAAAAAATCCATAAAATTGGCGGTAAA 27715 37 100.0 37 ..................................... ATGCCAGGAATACCAGGGATACCAGGAATACCAGGAA 27789 37 100.0 37 ..................................... ATGATACTTGTAATCATCATCCTTGCCCTAATTGCTT 27863 37 100.0 36 ..................................... TTGATTTTAATTCGTCAACGGTTACAGATCCGGGTT 27936 37 100.0 34 ..................................... ATTGAAGAAACAATCGAGGAGAAATGCGAAGTTG 28007 37 100.0 35 ..................................... TAGAAATGAAATAGATATAGGCGAAAATAAAGCTG 28079 37 100.0 36 ..................................... TTGATAGATGCGGCTGTTTGGGACGGAACAGCAAAG 28152 37 100.0 37 ..................................... CTAAGTTTATGGGGTGGAAACCCATCAAGCAGTATGA 28226 37 100.0 37 ..................................... TCAACCTTAGATACAACAAAGATGCTGCAAAGTTTCA 28300 37 100.0 38 ..................................... CCGTGCCTTTGGGAAATAAATTATGAGGAAATTACAGA 28375 37 100.0 33 ..................................... TTTGGTTATGCCCTGCTTTACCCGTTCTGCGGT 28445 37 100.0 32 ..................................... TATGGTGGCATCTACCCCAAAAGCAATTTCTG 28514 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 100.0 36 GTTTCAGTCCCCTTGCGGGGATTATGCAAATTGAAAC # Left flank : GCTTAGGCGATCGCTTTTCTGATTTGTGGCAGGCGATCGCCTTATGGTATAAGTGGTGGAAAGATAAACTGAATATTATGTATGCCAGCTAAAATTACTAGTTTTTAACCCATATCAAGAGGAAATTGTTATATGGAGAGACTAAATTATCCAGAAATAGTCCAAAAAATTCTGGAAGGTCATGCAAAAAATCGCTCGAATATTCAAACAGAAGTCAAACTGGTATTTGATACGGATCGCAATCATTATCAAGTTCTTAACATTGGTTGGCAAGAGCTAACGCGAATATTTGGTTGTATTATTTACATAGAAATTAAAGATGGCAAAATTTGGATTGAACGCGATGGAACAGAAATCGGCATAGCCAATGAATTGGTAAAAGCGGGAGTTCCTAAACAAGATATAGTTTTGGGTTTTAAAGCCCCATACAAACGGCAATTTACCGAATTTGCTGCTAGTTGAAGCATATCGAAATTACGGCAAAATACGGTAATTAGGTT # Right flank : CCCCGACCTCTGAAACCCAGTCTAAGAGCAGACCGTAGGAGGGATTTTGGCGGACCTCCGAAAAAACCTCATTACAGGCTTCGGGAGTGATGCCAACTGAAACTAACAAAACGCTGAAAGTATTTAGTTGTCAAGGTTCTGGCGATTTGGCGGACCCCCAGGGTTTTTGACCCCGCTTTGGATTGCCAAATTTATCTTGATCTAAGAGTAAAATTTAACAGATTACTTGTCAAGATTTACCGTATTACAAATAGTAAAGCATGAGATTGACAAAATTAGTCAATTATGTTTGATAAAGTCCGACTTCCTTGGTAATATCAGCCGCAACTTTCTGTCTTAAATCATAAGGTAACAGAATTTCTACCCTTGGTCGCCAAGCTCTTAACCGCATAGTTACATTATGATCACCATGTCGGTATTGAAGACTGTAATAAGCATCTTTTGGAGAACGATTGGCGATAACTTTTAATAATTCTGCCTTTTCTTCTGAATTAACTACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCTTGCGGGGATTATGCAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,4.5 Confidence: LOW] # Array family : I-C [Matched known repeat from this family], // Array 1 16692-16431 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIKX01000025.1 Dolichospermum sp. UHCC 0259 scaffold25_cov0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 16691 36 100.0 38 .................................... GTTACACCAGCCAGAGTCTGGATTCCTAAAGCTTTCTT 16617 36 100.0 40 .................................... ATAAAAGATTGAGTGGTTCCAGAATTTTTCTGAGGAACAG 16541 36 97.2 39 ..........T......................... GAGTAGTTTCAGAACCTTTGATTTGAGCAATATTTGCAA 16466 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 4 36 99.3 39 CTTTCCAAACCAACTTCCCCGCAAGGGGATGGAAAC # Left flank : TCCTGAACCAGATCCTAGCGAGTTATATCGCTTTATTTTTGCTGAGGACGTTTAGATTGGGGACTGGGGACTGGGGACTGGGTAATCAGGGAAAGTATGATTTTTTTATCACGCAGAGGCGCAGAGAGTAAGAGCTTGAGCATAGCGGTATGTATTCTTTGTGAGATACAGTCAGCAAATCCCGTAGGGGCGGGGTTTCCCCGCCCTCTATTGTGTTGTATCAAGTGCAATAACCCCTATAAATCAAATTTATACAAAAAAGTTGTTGACTATTCTAGTTACTAAGTAATAGAATAAAACTGGGTAAGTTGAATTTTTTCGACACACCTCCCCTGAACCTTGAAAACCCTATAATTTCGTTGAGGTGTGTCGAAGCCTTACGCACCAAAGATTTCAGCCGACAAAATCCGCCACTTTGTGAGAAAATTTTTCCATTTTTCTGAGGTGTGTCGAAATGGGTATCTGAAACCCTTGCCCAGTAAGCTTTCCAGAAGTGAACT # Right flank : GGTAGGGGTTTAGCACTGCTAAACCCCTACCTACTATACAATAACTGTTTAGGCTTAACTAAGCAGCATTGCTCACCGACGTGGCTACGGTGTACACAACCTTACCCAGAACGAGTTTCTAGCCCTGAAAGAAGGATTGAAACTGATGCCACCCACAAACTAAAGTAGAAATTTCGGGAGGTTTTTGAGTGCGCTGAAAGAAGGATTGAAACTGATGCCACCCACAAACTAAAGTAGAAATTTCGGGAGGTTTTTGAGTGCGCTGAAAGAAGGATTGAAACTGATGCCACCCACAAACTAAAGTAGAAATTTCGGGAGGTTTTTGAGTGCGCTGAAAGAAGGATTGAAACTGATGCCACCCACAAACTAAAGTAGAAATTTCGGGAGGTTTTTGAGTGCGCTGAAAGAAGGATTGAAACTGATGCAACCCACAAAACTAAAGTAGAAATTTCGGGAGGTTTTTGAGAGCGATCGCCAAATGAACCACCAAGTTGAGCAAT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAAACCAACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 6548-5468 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIKX01000118.1 Dolichospermum sp. UHCC 0259 scaffold118_cov0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 6547 37 100.0 44 ..................................... TTTTATATAACATCTTTCTGTATAAATTGTCAAATATAATTAAT 6466 37 100.0 36 ..................................... TACCAATCATTATTTAATTATGCCTAGAACAATTGA 6393 37 100.0 40 ..................................... TCATTTTGCAGTAGCAAATGGAGAGAAATTTTACTGTAGT 6316 37 100.0 36 ..................................... TATCTAATTCCCTACGGATTAGGGTTGATAAGTCAT 6243 37 100.0 38 ..................................... CCCTGCTTTACAACATTTTTAGGAGTTAAATAAATGAT 6168 37 100.0 36 ..................................... ACAATTAATTAAAGCCTTGACCTAAGCAAGTCGTTA 6095 37 100.0 37 ..................................... TTAAGTTGGGCGTTACTTACTTCTAAATTATCCTTAG 6021 37 100.0 38 ..................................... TCTAAGGATAATGTTAACGGTAAGGTAAGGAAGGAAAA 5946 37 100.0 35 ..................................... ATTAAGCATCTGACGACTACAACGACTAAATAAAT 5874 37 100.0 36 ..................................... AATTAAGCATCTGACGACTACAACGACTAAATAAAT 5801 37 100.0 37 ..................................... AAAATCACGGTTTAAAGATGATTCAAACTCGAAACGA 5727 37 100.0 37 ..................................... TTAATTGCTCGTTGGTTAGTTTAGAGTTATCAGAAAT 5653 37 100.0 36 ..................................... ACTCAATCTACTGCTTCAGTTGGTCTATCTGGTGTC 5580 37 100.0 39 ..................................... ATTAGTGGGTTAAGCATTGAGAACGGGCGTTTTAAACAT 5504 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 15 37 100.0 38 GTTTCAGTCCCCTTGCGGGGATTATGCAAATTGAAAC # Left flank : TTGGTATGGTAATTCTCCAGTTAAAAATCCTGCCGATGCTTACTTGGCACTTTATCACGACCAAGGTTTAATTCCCGTGAAGTTGATGGCTTTTGATCGGGCTGTAAATACTACCATTGGTTTACCCTTTGTACGGACTTCCCCGGATCATGGAACAGCTTTTGATATTGCCGGCAAAGGGATTGCTGACGCAACAAGCATGAAAGCAGCGATTCAGTTAGCGGTGGAGTTGGTTATACTCTAAACGGTTAAAACTTGGGCTTTTTGAAAAGTATGAAAATTCAGAGACAGCAAGCTATCTAGCTTTTCTTGTTTGTCAGTATTAGCGGTGTTAATACAGTTAGATATTGCTGGCTGAAAATCAGCAAAGTTAGCATAGTATTTAGAGGATAAAAATAAAGTTTACTAAAGAATTTTTGGGTTATTTTAGTCATCTTTAGATGACTTTGGTTATGAGACTGGGAATTCATTCCCAGTCGGGCTTCAATGATTATGTAATT # Right flank : CCCGACCTCTGAAACCCAGTCTAAGAACAGACTGTAGGGGGGATTTTGGCGGACCTCTTAAAAAACCTCATTTCAGGCTTTGGGTCAGATGCCAACTGAAACTAATGAAACGCTGAAAGTATTGAATTGTCAAGGTTCTGGCTATTTGGCGGACCCCCAGGGTTTTTGACCCCGCTTCGGATTGCCAAAAAATCAAGCTTGTATGTTCATTATATAATGATAGCTTGTTCTTGTCTAGGTACTTCCGAACCATAAGTAATAGTTCTTTTCACACTACCAGAATCTAGTACATAAATCCTAATAGAATCCTGATCAGACTTAATCAGCTTTTCCATTTTAGTTTGTAATTGGGCAAATTGCACCGCAGTCAAAAAACACTCAAACACACTGTATTGAGTCCACTTACCATAACCACTCAGCATCTTATGTAAACGAGTGCGGCGTTTATTTGCAGCTTTGTTATCAGGTAAATCGTAAATAATCAGATAAAACAATGTAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCTTGCGGGGATTATGCAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.5,5.14 Confidence: LOW] # Array family : I-C [Matched known repeat from this family], // Array 1 8063-8621 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIKX01000267.1 Dolichospermum sp. UHCC 0259 scaffold267_cov0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================================== ================== 8063 31 90.3 40 .......A.......T..C............ CAGCAGTATAAACCAGTTGTCCTTTTGTATTAGGCCTTTC 8134 31 90.3 40 .......A.......T..C............ TTTGCATAGATCCAAAGCATATTTTTGAACCTCCGCTTTC 8205 31 90.3 48 .......A.......T..C............ CAAATGCGCTTAGTTAGTGCTATCTCTTTTATCTGAGATATCAGTTGA 8284 31 100.0 41 ............................... TTTTCTCCTGTCATCATCTTGGCCACGTAGGAATAAGTTGA 8356 31 100.0 44 ............................... CGCTCGATACTTACCGGAAATTGTGCAAAGTGTTCATAAGTTGA 8431 31 100.0 48 ............................... TCATCATGAACCGATGCCGCTATCTTCCCACCGTAGTCATAGAGTTGA 8510 31 100.0 50 ............................... AAGAAGTCCATAGCTTGAAGTACAGCAGGTTTACCGAGTTGAGAAGTTGA 8591 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ================================================== ================== 8 31 96.4 45 CATTACCTCTTCCCCGCAAGGGGATGGAAAC # Left flank : GGAAGTTTTACCCGCCAGTCGGTCGGTAATGCTGTATTTTATTAACCGAGGTGATTGTGTAGAGTTTGCACCTGGAGATACAACAGATCCCGTATATGGTCAGTTGTTGCGAGAAGCGATTAAGCTGGGTTTAGAGGTTTTACCATGTCGGTTTGATATTTCTCCTGAAGGTATTCGTTATTTGGGTTTAGCAAAACTGAAGATTTAACACCCATGCCGAAAATCTTTGTTACAAATAGATGGCTGGCTTGTGGATAAATTCTTGACAATTGCCGCAGTGTTATATACAATTAATACAATGTGTTGAAATTTTTCGACACACCTCGCCCGAACCTTGAAAACCCTATAATTTCGTTGAAGTGTGTCGACTGCTTACACAGCAAAGACTTCAGCCTCCAAAATCTGCCGCTGGCTAGGAAATTTTTTCGATTTTTTAGAGGTGCGTCGATTGGGGTATCTGAAACCCTTGCTCAGTAAGGTTTCCAGAAGTGAACCCTTTC # Right flank : CTAAAAACATGATTTGATGGAAATTATTATTGAGAAAGCAGACTAATTAATTTCTTTGCGTCTTTGCGTCTTTGCGCGAAACATTCATTAATATGTAATTCATTGGTCTAAAAATAGCTATCAATGATTATTCTTTTAATGGGCGTTTCTGGTTCTGGTAAAACCACCATTGGTAAACTCTTAGCAGAAACACTAAACTGTAAATTTAGCGACGCTGACAACTTCCACTCAGCAACAAACATCGAAAAAATGCGGCTGGGTATTCCTCTCAATGATGCTGATAGAAAGCTTTGGTTAGAAGATTTACAAGCAGCCATCAAAAATTGGCTACAAGAAAATAAAAATGTAGTTTTGGCTTGTTCAGCACTCAAAACTAACTATCGTCAAATGCTGATGATTGATAGCTGCATTCAGCTAGTTTACCTGAAAGGGTCTTTTGATGTGATTGAAAACAGGCTAAAAGCCCGACAAAATCACTTCATGACCGAAAAGCTCCTCAA # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATTACCTCTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : CATTACCACTTCCCCTCACGGGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 28383-27689 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIKX01000326.1 Dolichospermum sp. UHCC 0259 scaffold326_cov0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 28382 36 100.0 38 .................................... CGATTGAGTTTGTTCAAGAACTTGTTCTTTCGCAGTAA 28308 36 100.0 40 .................................... TTTTGTGCTTGGTCTTCTGAAATTTCTTTTCTTTTTTCTA 28232 36 100.0 38 .................................... TTTTTATCAGCCTCAAGGAAAGGTTGCAAGGCTTGTTG 28158 36 100.0 37 .................................... GCTCTATTGAACGGGTCAAATTGAACGGGTTTGAAAA 28085 36 100.0 36 .................................... TGTAAGTCTTCTAATGCCTCTTCCGTACGTTTTTGA 28013 36 100.0 36 .................................... TTCAGAAAAAATAAAGGATACAAAAATACAATTCTT 27941 36 97.2 36 ..........................A......... CCTGCTCGGAGATTGGAATAGAAATTATCACTTTGG 27869 36 100.0 36 .................................... ATTGGTAACAGACGAACCTTGGGTTGTCTGTATGTA 27797 36 100.0 37 .................................... CTTCTAGTTCCATTAACCTTCAAAGAGTAAGATTTGA 27724 36 97.2 0 ....C............................... | ========== ====== ====== ====== ==================================== ======================================== ================== 10 36 99.4 37 CTTTACAAACCAACTTCCCCGCAAGGGGATGGAAAC # Left flank : GATCCAGGTGTATTGTTTGGTTCTAAGGCATTTATCCGCGATCGCGTATTGGACACCGTTCGCAAAGCCGGTAACTGGGGACACATCCTCAACCTTGGACATGGTGTCCTCCCAGAAACACCAGAAGAAAACGTTGCTTTCTTCTTTGAAACCGCCAAAAACCTCAACGCTTTGGTTTAGTAAGTTCAGTAGGGATAAGGTATCTTTTCCCTATTGAAAATATTTAATCTCCTGATTCCATAAATCGAATTTATCTGAAAAAACTCTTGACTATTTTCGTTGTTAAGTAATAGAATTAGATCGGTAAGTTGAATTTTTTCGACACACCTCCCCCGAACCTTGAAAACCCTATAATCTCGTTGAGGTGTGTCGAAGTCTTACGCACCAAAGGTTTCAGCCGACAAAATCCGCCATTTTGTAAGAAAATTTTTCCATTTTTCTGAGGTGTGTCGAAATGGGTATCTGAAACCCTTATCCAGTAAGGCTTCCAGAGGTGAACT # Right flank : AAGTGAAATTCTCTGAATTATGCTATGCTATTTTTCTTTCCATACCTTGCCATAACGACAATTTTTAACACCTACTTACCGATTCATAAAATTAGCAGTTATGAAAGACACCCTAAAAATTCGCCCCATGAACAGGCCAGAAGTGGCTTTAGCCATTAAATGGGCAGCCATAGAAGGTTGGAATCCAGGCATTTATGATGCCGATTCTTATTATCAAACCGACCCCCAGGGCTTCTTATTGGGCGAATTAAACGGTGAACCAATTGGGTGTATTTCCGCTGTTGCTTACGATGAACACTTCGGATTTATAGGTTTTTACATCGTCCAACCAGAGTATCGCGGACGTGGTTTCGGCATCCAACTTTGGCAAGCAGCAATGGACTATCTGGGTACTAACCGCAACATCGGTTTAGATGGAGTCATAGCCCAACAAGACAACTACAAAAAGTCCGGTTTCCACATCGCCTATAAACATATTCGCTACCAAAAAACAGGCGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAACCAACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 22448-23788 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIKX01000078.1 Dolichospermum sp. UHCC 0259 scaffold78_cov0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================================== ================== 22448 23 100.0 51 ....................... ACGATAAAATCAACACCAAGAACCTTCTTGGGATTCGGTTTCAATTTGCAT 22522 23 100.0 53 ....................... CCCACTGGTACTCCTATTACTATTCCAAATCCAGACCCAGTTTCAATTTGCAT 22598 23 100.0 50 ....................... AATAATATCGAATCACAGAACCTTGATGCAAATGATGTTTCAATTTGCAT 22671 23 100.0 47 ....................... GTAATTCCCCAGTGACAGCCTGTGCTGCTCCTCGTTTCAATTTGCAT 22741 23 100.0 49 ....................... AATGTAATTTTTGCTGGATTAGCTGCTGGACTAGCGTTTCAATTTGCAT 22813 23 100.0 50 ....................... TAAGGTTATCGGATTTTGAGACAGGCGTTAAGCGTAGTTTCAATTTGCAT 22886 23 100.0 48 ....................... TCCATCGTCCCTTCAAGTGGAACGCCGTAATCAAGTTTCAATTTGCAT 22957 23 100.0 53 ....................... ATTTTCTTCCAAAAGTTTATAAATTAAAATTCCTTCTAGGTTTCAATTTGCAT 23033 23 100.0 48 ....................... TATTCTAAGGAGAAAATACTAAACTTTCTCACAAGTTTCAATTTGCAT 23104 23 100.0 50 ....................... ATCTTGGGGCGCGGGTCATGTAAACTGGCTCTTTGTGTTTCAATTTGCAT 23177 23 100.0 49 ....................... GCCCCATCTGCATCCATCACCATCTAACTCAATCTGTTTCAATTTGCAT 23249 23 100.0 53 ....................... CTGGGTGATGTGATAACAACGTCATAATTAATAACGACGGTTTCAATTTGCAT 23325 23 100.0 51 ....................... ACTTAATAAAGCCCCTAAATGATAATAGGTAACTTTGGTTTCAATTTGCAT 23399 23 100.0 48 ....................... GCTAACATCCCAAACACCCAACGCCATTTGTGATGTTTCAATTTGCAT 23470 23 95.7 51 ........T.............. TTTAAGCAGTGGTCTACCACTTCTTCCATTCTTGCTAGTTTCAATTTGCAT 23544 23 100.0 49 ....................... AAGGATTTGTCAACCCCTAGAATAAAAAAATATTTGTTTCAATTTGCAT 23616 23 100.0 53 ....................... GTTAATTGTGAATATCAAGAATTATGCAGCGTCGCATGAGTTTCAATTTGCAT 23692 23 100.0 51 ....................... TTCCGAACTGTACCATCTAAATCGAGAAATAGGATTTGTTTCAATTTGCAT 23766 23 95.7 0 ..................A.... | ========== ====== ====== ====== ======================= ===================================================== ================== 19 23 99.5 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : GTTTTTTGTTACCTGCTGATGCTAGACCGGAGATTTTGTGTATTACTGATACTATCGCTGATAAGAATAAAACTGTTTTAGCCTATGGACAGACTTGGAATCATGGCGGTTTTAAGTGTGTTTCCCAAAAAACTGGTTTAACTTGTACTAATAAAAATGGGATTGGCTTTTTTCTCAGTCGGGAAAAATGGCGTGTTTTCGGACTTTCTCAGCCTTAGTTAAGTTTTGTATGGCTAACTATTTTTTACGTAGACAGAAAAAAGCAATTATTATATGATGAACACATTAGCCCGATTTTTGGCAAACCTAGAGCGGGGTCAAAAACCCTGGGGGTCCGCCAAATCGCCAGAACCTTGATAATTAAATACTTTCAGCACTTCATCAGTTCAATTTGGCTGTTGACCCGAAGCCTGAAATGAGGTTTTAAATGAGGTCCGCCAAAATCCCGTCTATAGTCTGTTCTCAGACTATGTTTCAGAGGGCGGGGTTTCAATTTGCAT # Right flank : CTTAACGTAAATTGATGTCCCTTCAAGTCCACCAGCCAGCCAGGGAATAAATTCCCTGTCTAAAAGCTAAAGTCGGTTAAAACCGACTGTTTTGGCATAAATAGGATAATTTTTGATTTTGAATTATACTCAAAACGCTTAGGGCATGGACTTTTGTAAAATCACGAAAAACCTTGATTTGTAGGGGTTTAGCACTGCTAAACCCTCGCTTAAATCAAATAATTAAGCTGTATTGAGTATAACCAGAGTGCGTTTTAACGCACTTTAGCTTTTAGACAGGGAATTTATTCCCTGGCAGGTTTCGCTGCTAAAGGGGTTAAAATAGATGAAATATCGCCTAAAATCACCCTTGATCTAGAACTACCTACTCAAATCCCATGGCCGCTGCCACAGCCTTAATATCAGCATCAATGCCCTGTTTGAATTGAGCATGACTGTGTTTAATAGCCGTATCTGGATCTTTCAAACCATTACCAGTTAAGACACAAACCACCGTTGCC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,4.87 Confidence: LOW] # Array family : I-C [Matched known repeat from this family], //