Array 1 5136-6699 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCNJ01000009.1 Caenispirillum bisanense strain USBA 140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 5136 29 100.0 33 ............................. GTGGTCATGCTGAGCCACAGCAGCGCCGACAAC 5198 29 100.0 32 ............................. GCGACGGGGCGCCCGGTGCGGGTGGCCGGCAT 5259 29 100.0 32 ............................. ATCACGGCGGTGAACAAGGCCGCGCCGACCAA 5320 29 100.0 32 ............................. CGGTCGCCCGGCGACAGGTACGACGTGTCGCC 5381 29 100.0 32 ............................. GCGCAAGGCGAGATGGGGCACGCCGAGAAGGA 5442 29 100.0 32 ............................. ACCCGCTCGGCGGAAGAGACGCTGCTGTACAA 5503 29 100.0 33 ............................. CTGCTGCTCGGCGATCCGCATGTGACGTTCGGC 5565 29 100.0 31 ............................. GCCGGCAAGTCGGCGCTCTATCAGGCGCGGC 5625 29 100.0 32 ............................. CCGTCGATAACCGGGCCTTGGTCATCCCAGTC 5686 29 100.0 34 ............................. TGCATCCGGGTCGACGTCGACTACCGCTACTACC 5749 29 96.6 34 T............................ CGGCTGGTGGAGCGGGGTGAGGTCATCCTGCATC 5812 29 96.6 32 ..............G.............. GTCGGCGAGCTGACGAAGCCGAAGTTCGAAAT T [5817] 5874 29 96.6 32 ...........A................. CCCGCCACCGGGTCCCAGGCCTCGACGACGAC 5935 29 96.6 33 ........G.................... CGTGGCCCCCTGCTGCATCAGATTGTTGACGAA 5997 29 96.6 33 ...........A................. TCGAGGGTCGCCTCGACGCGGCCGCGCAGGGCC 6059 29 96.6 32 ...........A................. TGCTTGGACGTCGGCTGGTTGTCCACTACGCC 6120 29 96.6 32 ..........................G.. GGCACTGTGTGGCTTGCCATCCGCCGGGACGG 6181 29 100.0 32 ............................. AACCATTGGTCGCACGTGCACGACGCCGTGCA 6242 29 96.6 32 ...........T................. TTCGGCCGGCGTGGGCAGATCTGCACGGCGTG 6303 29 96.6 32 ................T............ AAGTCGAGCACCCCGTCGAACCACCCGCCGTC 6364 29 96.6 33 ...........A................. TGGCTGACGGGCGGCATCCCCAACCGCTACCGG 6426 29 89.7 32 ........G..A...........A..... GAGCAGATGCGCACAGGCGTGGTCGACCTGCA 6487 29 96.6 32 ........T.................... TCGTTGCGCTTGTCGTCTTCCATCTTGTCGAG 6548 29 82.8 32 ..........TA.CCA............. CCCGGACGGTGCTCGGCTGCTCGCCGACGTCG 6609 29 100.0 33 ............................. AACTACGAGGCCGCCTGGGTGAGCGGGGTGCCC 6671 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================== ================== 26 29 97.4 32 GTGTTCCCCGCGCGAGCGGGGATGAACCG # Left flank : CGCACCCGCCTCGGCGACGAGCGCGTGCCCCTGGTGCTGGCGGTGGAGGGACCGGGCGGCACGCTCCTGCCGCTTTCCCGCGCCGACCGGACGAGCGAAGGGGCCCCGCCCGACCCGTTCGAGCGCCGCCGCGCCTGGGCGGAGAGCGAGATCTCCGTCGCCGCCCGCGGTGTCGCGACCGCAGCGCCACCACCACCGCGGTTCGCCGAGGCCGCCGCCGCCCTGCGCCGCGATCTCGGCTGGCAGGACGACGGCCCGCTGCTGGTCGTCCTGACCCTCGACCCCGACGCCCCGCCGGGCACCGGCTGGGTCGGCACCCTCCTGCGCGAAGACCGCCCGGCCACCCTCCGCTACCGGCGCGAGACCGGCCTTGCGCTCGCCTGAGGCGTGCGGCAAGGTAACTGCCGGATCTCTCCCGCGGACCGGCACGCATCGTGAACATCGGTCGGTGGATTTTCCCGTTCTTGAAAATCGTGCAGAAACAAGAGCTTCCAGGAAGA # Right flank : GCCCCCATGCGCGAACTCTCCCCTTCCTGGCGGCTCCTCTGCCTCACCCTCTAATTGACGATGGTCCGGCGTCATTTCCTCTTCCCTCCCACCCTTGCCCCTCATACCATTCTTCCAGATTCGCCGAAACGGAGTGTCCGCCGGTGTCGCACAACCTTCTTCTCCAGTCCTGGATCCCCGTCGCCGGGCCGGCTGGGGACGTGCGGCGGGTGACGGTGGCGGAGGCGGTGGCGGGGTTGGCGCCGGGGTGGCGCATCGGCTGGCCGCGGGCGGATTTCTCCGGCGCCACGCACGAATTCCTCATCGGCCTGCTGCACCTGACCGACCTGCTGCCCGCGGACGACGACGCCTGGGCCGAGCTGTGGGAGGCGCCGCCGACGGTCGAGCGGGTCACGGCGGCGCTGGCGCCGCTGGTGCCGCAGTTCGAGCTGGACGGACCGGGGCCGCGCGTGCTGCAGGACCCGACGGCGGCCGAGGGCGGCAAGCCGGTGGAGATCGCG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12884-14139 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCNJ01000009.1 Caenispirillum bisanense strain USBA 140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 12884 29 100.0 32 ............................. TATCCGGTCACCCGCGAGGGCGATCCCATTGT 12945 29 100.0 33 ............................. TCCCTCACGGCCTCGACAACGGCTTCCGCCCGC 13007 29 100.0 32 ............................. GCGCGCAAGACCGACTGGATGGCGACGTGGCG 13068 29 100.0 32 ............................. CCTCGCGACAGGTGGTGGACGCCGGAGGAGAT 13129 29 100.0 33 ............................. GCGTGCAGAGCTGGCTCCAGTACGCCCAATCGC 13191 29 100.0 32 ............................. TCCACCCGCCACGCCAGCGGATAGGTGCGGGT 13252 29 100.0 34 ............................. GAGCGCTGCTGGGGCACCTGCCGCAACGTCTCGC 13315 29 100.0 33 ............................. CTCATCGCAGCCCGCATCATGGCGAAGGAGGAC 13377 29 100.0 32 ............................. GGGTCGTAGACCACGTCGCCGGGGTTGCTGTA 13438 29 100.0 32 ............................. ACGCATGGCGAGTTCGGCCCGACCGAGGCCGC 13499 29 100.0 32 ............................. GCCTGATCCACCGCGACCGCGGGACGCGAGAT 13560 29 100.0 32 ............................. CGGTTGGTGGAGCGGGGTGAGGTCATCTTGGC 13621 29 100.0 32 ............................. CGCGCCCTTGGCCGGGTTCGCGTTGTTCAGGT 13682 29 100.0 33 ............................. TTTTGGGGTCGAGCATGACGAAAAAAACACCGC 13744 29 100.0 34 ............................. GAGAGCAGCCCGATGGCCGCCCGCCAGACCACCC 13807 29 100.0 32 ............................. GCGTGGCAGAAGGCGAACAGCACCTTCAGGGC 13868 29 100.0 30 ............................. TCGGCGGTGTACCCGCAGCGGCGGCCGGCC 13927 29 96.6 32 T............................ CGGCCTTTGACGACCTCGCCATGCGCATCATC 13988 29 100.0 32 ............................. GAGGCGGCGCAGGAGGCGGGCGCGAAGAAGCT 14049 29 100.0 33 ............................. AACCTGTCGCTCAGGCCCAGGATCGCGAGGGCG 14111 29 86.2 0 ......................G.G.GT. | ========== ====== ====== ====== ============================= ================================== ================== 21 29 99.2 32 GTGTTCCCCGCACGCGCGGGGATGAACCG # Left flank : GCAAGACCCGCCTGCTCGGCCGTCTCATTCCCCTGATCGAGGAGATCCTGGCCGCCGGCGGTCTGGCGCCGCCCGAAGCCCCGCAAGACGCCGTTCCACCCGCCTTCCCCGACCCAGGCCCGTCCGGCGATGCTGGTCATCGTGGTTGAAAACGCCCCGCCGCGCCTGCGCGGCCGGCTCGCGGTGTGGCTGCTGGAGATTCGCGCGGGGGTCTACGTCGGCCGCTACTCGCCGCGCATCCGCGACCAGATCTAGGCCCAGGTGGAAGCCGGCATCGAGGACGGCAGCGCGGTGATCGCGTGGTCCGCGCCGACCGCCATGGGCTTCGACTTCGAGACGCTCGGCCGGGACCGCCGCGTGCCGCGCGACTTCGACGGCCTGAAACTGGTGTCGTTCCTGCCTGCCGATTACGAAGAAGATTCAGGCTGACGCCGACGCGCGAATCCCGGTAGAATTTCGCGTTCTTTAAAATCGTTGACGATCAATCACTTGCAGTAAGA # Right flank : GTCCCCGGAGGTGGTGTAAGAGCACGCGAACGGGGATGATGGCGGAGGGCGCGTGGCGCCCGGAGGCACCATCCCCGGGCGGCCCCGAGCCTGGGGCGGTCATCGTCGATCTCCGGTAGGCTGAGGTTGCGACAAACTGCAACCCACGGAGACCAACCGATGACCATGGACAGGATGGTCCTTGCCGAGCTTCTTGAGAAGGGTTCCGACAGCGGCCTGCTGCGGGAGATGATCTCGTTCGTCGCCCAGCGGCTGATGGACTGCGAGGTCGAGGCCGTCTGCAACGCCCAGCCGAACGAGCGCACGCCCGAGCGCACCAACTCGCGCAATGGCTACCGCGATCGCTTGTGGCAGACCCGGGCCGGGGCGATCGCGCTGAAGATCCCCAAGCTCCGCCAGGGCAGCTATTTCCCGCCTTCCTTGAGCCGGGGCGCATCGCCGAGAAAGCCCTGGCGGCGATGATCCAGGAAGCCGGAGCCTGCCCTCGGGCTTGACCCGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCTCGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //