Array 1 5212-6459 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYWY01000032.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTUT442TT NODE_32_length_57591_cov_16.5367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5212 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 5273 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 5334 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 5395 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 5456 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 5517 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 5578 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 5639 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 5700 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 5761 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 5822 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 5883 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 5944 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 6005 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 6066 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 6127 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 6188 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 6249 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 6310 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 6371 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6432 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23222-25325 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYWY01000032.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTUT442TT NODE_32_length_57591_cov_16.5367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23222 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 23283 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 23344 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 23405 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 23466 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 23527 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 23588 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 23649 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 23710 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 23771 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 23832 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 23893 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 23954 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 24015 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 24076 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 24137 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 24198 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 24259 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 24320 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 24381 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 24442 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 24503 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 24564 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 24625 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 24686 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 24747 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 24808 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 24869 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 24930 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 24991 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 25052 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 25113 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 25174 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 25235 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 25296 29 96.6 0 ............T................ | A [25323] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //