Array 1 1954-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNUL01000132.1 Loigolactobacillus coryniformis subsp. coryniformis strain CRL 1001 Contig0132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1953 36 100.0 30 .................................... GTCGGTTAAAATTCCAGTGGCTGCCAGCAA 1887 36 100.0 30 .................................... CGAAGCGCTGGAAATTGCTCCTATCGGTCA 1821 36 100.0 30 .................................... TGATTCGTCAGAAATTCTTAAATCGTATTT 1755 36 100.0 30 .................................... TTTTTGAAATGCTGTTGATCGATGTTTAAT 1689 36 100.0 30 .................................... GATCATTAAGCCGATGCTCATGATCTTTGT 1623 36 100.0 30 .................................... ACCGAACGTGATCGTAACCGCCACCCTCTA 1557 36 100.0 30 .................................... AAAAGAAATGACAATTAAGTATGAGTGCCA 1491 36 100.0 30 .................................... TTACGTTAGGGTTTTTAGCTTTGAACTGTT 1425 36 100.0 30 .................................... TAAAAATCAATTCTGGTTTTGGAAAGCCAT 1359 36 100.0 30 .................................... CATAATTTTCTAAAATTTTCTGGCAATCGT 1293 36 100.0 30 .................................... TTATTTCAAAATGGGAATCTATAACTTGGC 1227 36 100.0 30 .................................... ACCGTCACTAAGCCGCCTGAAACAGTAGCT 1161 36 100.0 30 .................................... AATGGATTGATCCCATCGGACTTAGCAACT 1095 36 100.0 30 .................................... GTAAACGGCCGCTTGAAGGCGCCCTGACTG 1029 36 100.0 30 .................................... TACGTATGAAAGCACGATTACATTACCAGT 963 36 100.0 30 .................................... TCCGGTAGATCCGTCAGTCCTGGAGACGCT 897 36 100.0 30 .................................... ATACGCGGTCACAAAAACACCCCAAGGGTA 831 36 100.0 30 .................................... TTGTCGTACCCACATAAGTTTCACCTTCCT 765 36 100.0 30 .................................... GGCAGATTAATAATAGCGGTATCGTCATCA 699 36 100.0 30 .................................... GGGAGTATCATAACCACCCATATCAGTCGT 633 36 100.0 30 .................................... GGCTGCTTAAGCGTGCTTAAGGCTTGTCTA 567 36 100.0 30 .................................... CCGGATTGCTGTTGCAATAAATAATTGTCC 501 36 100.0 30 .................................... GGCAAATTATGGCGTTAGTCAACCTGGCGT 435 36 100.0 30 .................................... TTTCCTTTACCTTACAAGACTTATTATATA 369 36 100.0 30 .................................... CCTTTCCTTATCTTATGAGCCTAGTATATA 303 36 100.0 30 .................................... CACTTTGCGTGTCGTAATCGTAAAAGTCCT 237 36 100.0 30 .................................... CGGTTATATTCGGCCAAGAATTGAGCGTAC 171 36 100.0 30 .................................... TCAATAAGCGATTAGTAGCTGTTGATTTTT 105 36 100.0 30 .................................... AGAATATCATGGCTATCAACGACTGTTTCC 39 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 100.0 30 GTTTTAGAAGAGTGTTAAATCAATGAGTTTAGAACC # Left flank : CTACTATATTGATCAGGATTACGTCGATTGGCGTTATGAGTGATTCTGAGAAGATAATGTGGAAATAAC # Right flank : CAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTTAAATCAATGAGTTTAGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAAGAGTGTTAAATCAATGAGTTTAGAACC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 9031-7082 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNUL01000114.1 Loigolactobacillus coryniformis subsp. coryniformis strain CRL 1001 Contig0114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 9030 36 100.0 30 .................................... GTCGGTTAAAATTCCAGTGGCTGCCAGCAA 8964 36 100.0 30 .................................... CGAAGCGCTGGAAATTGCTCCTATCGGTCA 8898 36 100.0 30 .................................... TGATTCGTCAGAAATTCTTAAATCGTATTT 8832 36 100.0 30 .................................... GATCATTAAGCCGATGCTCATGATCTTTGT 8766 36 100.0 30 .................................... ACCGAACGTGATCGTAACCGCCACCCTCTA 8700 36 100.0 30 .................................... AAAAGAAATGACAATTAAGTATGAGTGCCA 8634 36 100.0 30 .................................... TTACGTTAGGGTTTTTAGCTTTGAACTGTT 8568 36 100.0 30 .................................... TAAAAATCAATTCTGGTTTTGGAAAGCCAT 8502 36 100.0 30 .................................... CATAATTTTCTAAAATTTTCTGGCAATCGT 8436 36 100.0 30 .................................... TTATTTCAAAATGGGAATCTATAACTTGGC 8370 36 100.0 30 .................................... ACCGTCACTAAGCCGCCTGAAACAGTAGCT 8304 36 100.0 30 .................................... AATGGATTGATCCCATCGGACTTAGCAACT 8238 36 100.0 30 .................................... GTAAACGGCCGCTTGAAGGCGCCCTGACTG 8172 36 100.0 30 .................................... TACGTATGAAAGCACGATTACATTACCAGT 8106 36 100.0 30 .................................... TCCGGTAGATCCGTCAGTCCTGGAGACGCT 8040 36 100.0 30 .................................... ATACGCGGTCACAAAAACACCCCAAGGGTA 7974 36 100.0 30 .................................... TTGTCGTACCCACATAAGTTTCACCTTCCT 7908 36 100.0 30 .................................... GGCAGATTAATAATAGCGGTATCGTCATCA 7842 36 100.0 30 .................................... GGGAGTATCATAACCACCCATATCAGTCGT 7776 36 100.0 30 .................................... GGCTGCTTAAGCGTGCTTAAGGCTTGTCTA 7710 36 100.0 30 .................................... CCGGATTGCTGTTGCAATAAATAATTGTCC 7644 36 100.0 30 .................................... GGCAAATTATGGCGTTAGTCAACCTGGCGT 7578 36 100.0 30 .................................... TTTCCTTTACCTTACAAGACTTATTATATA 7512 36 100.0 30 .................................... CCTTTCCTTATCTTATGAGCCTAGTATATA 7446 36 100.0 30 .................................... CACTTTGCGTGTCGTAATCGTAAAAGTCCT 7380 36 100.0 30 .................................... CGGTTATATTCGGCCAAGAATTGAGCGTAC 7314 36 100.0 30 .................................... TCAATAAGCGATTAGTAGCTGTTGATTTTT 7248 36 100.0 30 .................................... AGAATATCATGGCTATCAACGACTGTTTCC 7182 36 100.0 30 .................................... AGGCACCCTTCGAAAAATCGTCGGCGACCT 7116 35 80.6 0 .............C..........C-....GT..AA | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 99.4 30 GTTTTAGAAGAGTGTTAAATCAATGAGTTTAGAACC # Left flank : GCACTGACTTAAATAAATTGTTTCTGCCACAATTGTACAAGCAAATTAAATTAAATTTAACTGCTGAACAAAATCGAATTATTACGGATCAAAGCCGTACGCTAAAAAATGTAGTACTTGAAGCGACTTACTCGCTGGATCTACCGCTAAATATCGGCGACCAAATTGCAACTGAAAAAGTTTTAAAATTTTGCGATCTACACTTTGATACTTCTTTATCAACTAACTGTTATGGTATAATAGAGACAATTCTAAAAACAGCTAAAGAATTAAATGAACAGCGTATTTTAGGTTTTATGAACATTTCTGATTATCTTACATTACAAGAGTTACAAGATTTATTTGAGTTGATCAGAACATTGGATTTAACCGTTCTTATTATTAAATTCTCAGAAAATCAGAGGTCTGTAGAATTTAATAATTGCCGGTACTACTATATTGATCAGGATTACGTCGATTGGCGTTATGAGTGATTCTGAGAAGATAATGTGGAAATAACG # Right flank : TAGCGCCTAATTGATGGCGCTATTTTTACAATCAAATTTAGTGCATTTCCGCGCAACATCACCGATAATACAGGTAAATCTGCGGACAAGGTGGTGGCGTCATGACACCGGTGCAGGAAGCACAACTTAATGACATTTACAATTTGATCCTCAACCCAGCAACTCGTGACTGGGAGCGAGCGCAACTAGTTAAGCTGAAAAAAGCCGTTGCTGCAGGTGCTACTTTTAATACGGAGTTGGCACGGTTGGAAGCTAGCTTACGACCTTTGGCGGTACGCGATAATCTGACTCCCGATATGACTGATTTTTATCACAAAATTACCGGTGAGCCTGAATTGGCCGCCAAATTTGATCTTTCCCGCCACTATGCGGCCGACCAGCCGTATGAAGCGCGGGCAATTTTCGCCGGTGGTTGTTTTTGGTGTATGGTTGAGCCGTTTGATGCGCGACCAGGGATCATCGCGGTGATTTCGGGCTATACTGGCGGTCACACCGAAAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTTAAATCAATGAGTTTAGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAAGAGTGTTAAATCAATGAGTTTAGAACC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //