Array 1 28637-31176 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUV010000006.1 Lactobacillus delbrueckii subsp. lactis strain 24783 L_I_202_24782_c6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 28637 33 100.0 34 ................................. AGTTTTGACACGTCGTCTTGTGCCTTTTCGCCCA 28704 33 100.0 32 ................................. AACGACACCTGAAGTCCAGGCGGATCAAACAA 28769 33 100.0 36 ................................. AAAGTGTCCGTCACCTCTAACCACGCCTATCAAGTC 28838 33 100.0 33 ................................. ATTAGTAAGCCCTCCTTGCAAGATTACATCAGT 28904 33 100.0 35 ................................. GTCGCCCACTTGGGTCACTTGGACAAGCACCATGT 28972 33 100.0 35 ................................. GTTGAAGCAAACAATATCAATGCACAAAAGACCAG 29040 33 100.0 35 ................................. AAGCGATCTTGTCCGGTTGGTCAAAGGCAAGACAG 29108 33 100.0 35 ................................. AAGCGATCTTGTCCGGTTGGTCAAAGGCAAGACAG 29176 33 100.0 35 ................................. ATCTAACCCAAAAGAAGGAGCGTCAGAAGAGATAA 29244 33 100.0 36 ................................. GACCAGGCTGTCCCAACATTTATCCGGCAAAAACGT 29313 33 100.0 37 ................................. TAGTTAATAGATGGCATCAGCGTGATGATCGCTTGCC 29383 33 100.0 36 ................................. TTATTGACAGTCAAGCAAAAGGTAAGAACGTTGCAA 29452 33 100.0 35 ................................. TCAAACAGGTATTAGGTGATAAGCCAGCAGATAAG 29520 33 100.0 33 ................................. CCACTGCTAAGACATTTAACAACTGTTCTTTAG 29586 33 100.0 36 ................................. ATGACGGGCATCGGCTTAATTTCATGGGCTTTTGAT 29655 33 100.0 37 ................................. CAAGTTTGGGTTGCCGAACCAATTTAGCGTGTACGGA 29725 33 100.0 33 ................................. TGCAATGTAGGATTAAGCACTTGATCGCACAAG 29791 33 100.0 37 ................................. TCAAGGCCTTTGAGCCAGTCTCCCCAGTCAAAGCCGC 29861 33 100.0 35 ................................. TTATTGTGCGTGTACAAAGCCGCAAAGCCAGCGGC 29929 33 100.0 34 ................................. CAGATAGCCCGGCCTTGTCGAACGTCTCAGCCTG 29996 33 100.0 36 ................................. AGCGCATCGGTCATAGCTGATGCCAGGTCAGTCAAG 30065 33 100.0 35 ................................. AACGCTCCTACGGCGTAATCGGCGACCCGGAAAAG 30133 33 100.0 34 ................................. GGTGATAACCTCTGCGGCGTATTCCCGCTTTTGG 30200 33 100.0 35 ................................. TTCTGGCCACCTTGGCCAGCATGGATAACGGCGGT 30268 33 100.0 33 ................................. CCTGCAACTAAATCCTGTGTAAAAGCCGTGCTG 30334 33 100.0 37 ................................. TGGCGACTATGATATGCACGACTACCGGATGCTCTAC 30404 33 100.0 35 ................................. AACTTGATGGCAAGACTTATCCGGTCTACGCTAAC 30472 33 100.0 34 ................................. TCAATCCATGCACTGAGAGTAACCGTTTGCCCAT 30539 33 100.0 33 ................................. ACTGACTGGTGAAGACGTCAACCGCTTGCGTAG 30605 33 100.0 35 ................................. TTCTCCCAATCGCGAAAGTTTGGCTATGACATCAT 30673 33 100.0 34 ................................. GCGATCGGTGGCACTCTAGTGGCGGCTGCTTTGG 30740 33 100.0 35 ................................. CCGCATAACTGGCAGACAGGTTATTTTATTGACAC 30808 33 100.0 35 ................................. AGTCGATCACTGAAGGCGACGTATCCGTATCCTTT 30876 33 100.0 34 ................................. AACTCCATTGCTGGCGGAGCTATGGTCGGCAACT 30943 33 100.0 35 ................................. ACAGGCATGGCTACGCAGTTCAAGACCATGGGTGA 31011 33 93.9 33 ..............................G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 31077 33 100.0 34 ................................. ATTTGCTGGTACAAAAGTAACAGAGTTACAACAA 31144 33 84.8 0 ..........A...AA....T......C..... | ========== ====== ====== ====== ================================= ===================================== ================== 38 33 99.4 35 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CGGATACCCTCCGTTTTTATGGAAGTAAGTGATTGTAGATGATGATGGTAATTGTCAGTTATGACGTGAATACTGAAACTGCTTCGGGAAAGAAGAGACTAAGAAATGTTTCCAAAATATGTAACGACTATGGCCAAAGAGTTCAAAATTCAGTATTTGAGTGTCTTGTAGATTCTACAAAGCTTGAGGAAATGAAGGAACGCTTACTAAAGGTATATGATGAAGAGTGCGACAGCTTGTACTTCTTCAATGTAGGCAAAAAATATGAGAACAAAGTTCAGTCTTATGGGTGTAAACAAGTATTAGACTTGGGAAAGCCAGTTGTCTTCTAATTATCTAGACAGTGCGAGTGTGAAGCTAACAGAATTAGGCAGAGGATTCGCACTGTTTTTGACTATTTTTTTGTAGTCTTGAATATAAAATTGCAGTTTTTTAATGCTTTTTATATTTTGTATGCCCAATATTTAGCTGTGAAAATGCTTTTTTTACTAAATGTTGCG # Right flank : TATCGCTTAGATATGTGGATGCTTGATGGTCAAATTCCACTAAAAGCACTCCCTAGCGGGGTGCTTTTTAATATTTCGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAACAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCACGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAGTTGCCCTAAATGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCTCAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.40,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1434-142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUV010000081.1 Lactobacillus delbrueckii subsp. lactis strain 24783 L_I_202_24782_c81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1433 35 75.0 39 .C.T.....C...C.G.-...G...T.T........ GCATAGTGCGGATTGTAAGTAGCGACAAGCTTTGTTGCA G [1420] 1358 35 80.6 35 C..T.-.C......T...................AT GTGCAAAGCAGAATGAGTCTCCGTAAGGAATAAAA G,C [1324,1327] 1286 36 94.4 36 ....C..C............................ GAAAATAAAAAAAGTTGCAAGCGAAAGCTTGCTAGA 1214 36 100.0 36 .................................... AGAAAGAGGTAATAAAAATGATTTCCGAAAAAACTA 1142 36 100.0 43 .................................... AATACGACAACACTTATAACTATTGCGGTTATCTTGATAACTA 1063 36 100.0 37 .................................... TATGATGAAGATTTTAGAAAAGAGATGGAAAATTTCA 990 36 100.0 37 .................................... CCGAACAAACTAGAAAAGCTATGTCAATAGATATCAT 917 36 100.0 40 .................................... ATAATAATTGAAATGAAAGAGGTAAACAAAATGGAATCTA 841 36 100.0 41 .................................... TCACCTAACCGAGCAACAAAAAGAAAAATTCCTCACTCACA 764 36 100.0 39 .................................... ATTAAAATGAATTTAAAAGAAGTTTTGCAAGAAATTACG 689 36 100.0 36 .................................... GCAAAAGGATAGCGTGATCAGTCACATGGACGACGT 617 36 100.0 38 .................................... TTTACTACCGTTCAGTACTCGTTAGATGTTAGTCAAGA 543 36 100.0 37 .................................... CTGTTAGACTTGAGACAAATCAAAAAAAGGAGACTAA 470 36 100.0 37 .................................... AAAATAAAAAATATTTTTTTAAAAAATAGTAGACATT 397 36 100.0 37 .................................... TTTTAGGAGGTAACAAAATGGAATTAGAAGAAGTTTT 324 36 100.0 38 .................................... TCTTTGAGGATCAAACGCTCGTTTGTGAGGTATTCGTA 250 36 100.0 37 .................................... GACAGAAAAAAACAAAAAGTTTTAAAGTTTTGCTTTT 177 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 18 36 97.2 38 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : TGGCAAAAATCCGCACGCTGAAGCGTTTGATCGCCCGGCAGACTTGAACTAGATAAAGTAGCGATAATTGGATTAAACGGTTGGCCAGGATCTTATGGTTCAGCAAGTCATACAAGCCTTGGACCAGCTGCCCTTGAAAGTATGGTCCAGCGCAGCGACCATGCCGATATTGTAGATCAAGCCTGAAATAGTAACGACCACAAGAATTGGCGCTTCTTACCAGAAGTAGCTGCTCATTTTCTTGGGGTCGCGGGTATTTTCTGCTTCATCTCGCTGCCTCCTCTGACTGCAATTTTGCCCGCTTCTCTGCATCCGCTATCAGCATTTCCACCTTCATCATAGCACCGATTCTTCTTCAGTCTAGTCCATTTTGGACGGAATGAAGGAGGTTTTTTATACGAAAAAACGGCCAGCAACTGGCCGTTTGGCTTATGTCTCCTTTTAACGGAGATTGTGCATTGAAAATAGATTGATTAATAATATAGCTCTTTTCTTTAAAT # Right flank : CAATTTTTGCTATTATTACTTAAACTTCCCACTTGCAAACGTGGGCTCGTACCTTGAAAATTCAATAGTTTAGCCAATAAAAAAAGCACAAGGCCTTTGTTCGCTTGATATAATTCAACTACAACATCATCAATATCAAACG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 19797-18949 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUV010000029.1 Lactobacillus delbrueckii subsp. lactis strain 24783 L_I_202_24782_c29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 19796 36 100.0 38 .................................... TCTTTGAGGATCAAACGCTCGTTTGTGAGGTATTCGTA 19722 36 100.0 37 .................................... AAAAAGCTGGAAGATGAAGGGCTAATTGTTACAGGTA 19649 36 100.0 33 .................................... TAGCACGCTATGAGAAGGATAGCGGAAAATTGT 19580 36 100.0 39 .................................... AAGAGTGTAAGGAAGAACGGAGGAAAATAAAATGACTAA 19505 36 100.0 38 .................................... CGCCAAAAATGATCAAAACAACCGACAAAAACGGCAAG 19431 36 100.0 38 .................................... ACTAAAGAAAAAGAATACATGACTAACTACATGAAAAA 19357 36 100.0 41 .................................... TCTACAGCGATTTACTTAAATGGTCTGGTGATGAGTTTGCG 19280 36 100.0 35 .................................... TTGTAAATGACTTAGAAGAATTCGCCCAAAATTGC 19209 36 100.0 39 .................................... TCAAGACCTTGTTTGTGAAATTTTCGTTGATACTAAAAA 19134 36 100.0 40 .................................... TTTCTTAGAAAATCAACCATTTTTTAAACTTTTTCGCAAT 19058 36 100.0 38 .................................... TTGACGTTTCCAACTTTTACTAGAAAAAACGGGCTTAA 18984 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 12 36 100.0 38 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : CCCGCCTCCCGAAGTACATGCAGAGGCATTAACGCCATCACTAGCAGCTTAATTGAATATTTACTGGCTAAACTATTGAGTTTTCAAGGCTTCATAGTTCTTTTTGGTGTGGGAAGTTTAAGTTATTAAATATGTGCTGAGGCACGA # Right flank : AGATCCTGTTTAAAACGTTATTACGTCGCGCATCCCCAAGCATTTGTCTCGTCTAAATCCTGGTCAACGCCCATCAAACAGCATCCCTCTTTGTCCTATTTTTGGACAAAAAAGGCACCTCTGCTAATTGAGAACATATAAATTATACCACACCAGATGCTACACCACGATCACCTTAGGTACTGACACTGCCTTCATTGGTGCGTCTGGACCCAAAATGTTAATCTGCTTGTTATTCACCTCATCTGGCAACAGATATAGAGTTATCATTCCATCATCTGGAACTTCTTTTTTCAAAATCCCAATCAAATGGTCTTTCGTAGTATCTGACTCCACCTCCCGTTCATACAGGCTGTACTGCTTCATGTCAAATCCCAACTCAACCAGCCGTTTCCTGTATTCCGCGGCTTTCTTTCGCTCTTCTTTGGTATTTCTAGGCAGATCAAAGCTTAAAAGAAGTACCATCATTTTCCTCCTTGAATGAAAGTCGGCAACTTCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //