Array 1 3148824-3148124 **** Predicted by CRISPRDetect 2.4 *** >NC_023032.1 Cronobacter malonaticus strain CMCC45402, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3148823 29 100.0 32 ............................. CGTTTTTTCATCAACTTACAATTGATTAAGGA 3148762 29 100.0 32 ............................. CCTGTGCGCATAACGCCGTAGTGATCAATGAT 3148701 29 100.0 32 ............................. AAATTCTCCAACGCTTCTCAGGTGACGTCACG 3148640 29 100.0 32 ............................. CCAATCGCCGCAACGTTCATTATCGCGCTGCG 3148579 29 100.0 32 ............................. CGCTGGATAATTTCTCTCTTGTTCCTGGAAGC 3148518 29 100.0 32 ............................. CAGACCGCGTACGACGGGATGCCGAAAATCAG 3148457 29 100.0 32 ............................. ATCTGGCAGGAGAGCGGGGGTAATCATTACGG 3148396 29 100.0 32 ............................. ACGCAGCGTTTATCGAGCGACTGATACTGCGA 3148335 29 100.0 32 ............................. ATAAAAAAATAATTGATGAAATAAATGCTTTA 3148274 29 100.0 32 ............................. AAGTCTATCTCGGTTTTTCACCCGAAATAGGC 3148213 29 100.0 32 ............................. ACGCCGAATACGCTGCGGCAGACGCGTGGCAG 3148152 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAAATGATCTGGCATCAGATAAATAAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATCATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAACCGTCGTATCCCGGTGGATTTGGATGGCCTGAGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAGCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGCCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : GTATATCAATAACGTGGTTTATTGAATATGTGCAGGAGCATTATTTTATATGGCAATATATAAAAAACAATTCTGAGTTGGGGTATAAAGATAACGGCAATGCTTAAAGAATTAAAGATTATTACATCGCTTCTATTTTTGCTGATTATATTTATATGATTTTTATTGCTGGTTTTTATGTGGGTTAACTTAATTTCAAAGTTGAATACAGTATTTATTAATTTGTGCATGTAGAATTTATATGTTCTTCATTTAATAGGACTTTATAAATGACATGGGATAAATATGCAGCAATACGTCATGCACAGGATCGTGCCTACAGTAATAGCTATCATAAGTGCGAGTTATTTGTTAAAGAAGCTATTATTGCTGGTGGGGTTGATATACATCCAACGCCTTCTGCAAAAGATATGGGTAAGGCATTGATTCAAGCTGGTTTCTATGAGGTTTATGGTGAGCCCGTAGCTGGTGATGTCGCTGTTATTAGCTCGATCCCCGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3175329-3174446 **** Predicted by CRISPRDetect 2.4 *** >NC_023032.1 Cronobacter malonaticus strain CMCC45402, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3175328 29 100.0 32 ............................. TAAATTGCACGGATGGCATGCGGGGACGATAT 3175267 29 100.0 32 ............................. CAGGGAGGCTGAGGCTCAATATCAGCGCGCTA 3175206 29 100.0 32 ............................. TTATCGGCTAATTCAGCCGTTCCGCGTTTAAC 3175145 29 100.0 32 ............................. AATTAAGCCGCGAACAGGCGATACTTAACGCA 3175084 29 96.6 32 ............A................ CGCACCACTCTTCAACACCTACGGCCAGCGCC 3175023 29 100.0 32 ............................. GAATACACAGACGACCAGTTATACGACGCGCT 3174962 29 100.0 32 ............................. CGACAAAATAAAAACAAAAAACTTTGGCGACA 3174901 29 100.0 32 ............................. GACTTTTAACAGGGGCGATTGCTCATCCGATA 3174840 29 100.0 32 ............................. TGGGCCGTTCAGCTCCGCTCTTACGTCCTGAA 3174779 29 100.0 32 ............................. ATTAACTCCATATCCTTACCAGTTCTTCCTGA 3174718 29 96.6 32 ........T.................... CCAGGAAGACATGCTCGACCAGATTATGCGCG 3174657 29 100.0 32 ............................. GCTGGGCCTGTATGACCTGCCGGAATACCAGA 3174596 29 96.6 32 ............A................ AACTATCTATTTCCTGATAAATGGGGGATTTA 3174535 29 96.6 32 ............A................ AACACGTCGTCGTAGGCTTTTCCTGGCCACCA 3174474 29 93.1 0 ..........G..............G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : CGGCAGCGTCAATACAGACTTCTTTTGAGAGCCTGTTCTTCACGCCTGTCAATCGCCGCCCCATTTCCCCTCACATTCTTCATCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAACGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : CTGTTCCCCGCGAGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //