Array 1 79142-76473 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTPD01000024.1 Cronobacter sakazakii strain MOD1_LR634 LR634_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 79141 28 100.0 32 ............................ AAAATGACGCTGGCGGCGCTCGACGCCACATT 79081 28 100.0 32 ............................ GCACCCGGCCCGCGACTTGTTGCGAACGTCTT 79021 28 100.0 32 ............................ AACGAGTGACGACGCCTGCGACGCAGGCAGCA 78961 28 100.0 32 ............................ GCGCAGCCGACCGGCCCGCACCACGACCCGGC 78901 28 100.0 32 ............................ CCAAGGTACGCTAATTGGCTCTTGCGCTGCCG 78841 28 100.0 32 ............................ CGGGCGCGCGGTGCTTTGATGTGCTTGGATCT 78781 28 100.0 32 ............................ TCTGCTTTCAGGGTGTGGGAAATATCGCCGCT 78721 28 100.0 32 ............................ CTGAATCGCGATGGTGTCCAGACAGGCACTTT 78661 28 100.0 32 ............................ AGGCGCGAGCGCGCCAGAACGTGCTGGAAACT 78601 28 100.0 33 ............................ GCCAGGATATCGGGCTAACCGTCGCTATCAAAT 78540 28 100.0 32 ............................ GTACTGAACGAAACAGGCGACGCACCCCAACC 78480 28 100.0 32 ............................ TATCTGCGCCGCATGAAACCCACTGACAAAGC 78420 28 100.0 32 ............................ AGCACCTGCCCGAGTGGTGCGTTTACGTTGAA 78360 28 100.0 32 ............................ ACTATACAGCCAGTGGTACGACTGGCAGCGGT 78300 28 100.0 32 ............................ TGCTGGTGTACCAGATGTGGCGCAGGCGCTAC 78240 28 100.0 32 ............................ ATCCCGAAAACATCCCAAAAGTTGCCGCTGTT 78180 28 100.0 33 ............................ CTGGGTGTGGGTAATCGAATTCCGTCGCGTTGG 78119 28 100.0 32 ............................ TGTGCGAGTGGGATAAGGATGACGAGTCTTTC 78059 28 100.0 32 ............................ CCACACGCACAGCAGATATTTCACCCACGCGC 77999 28 100.0 32 ............................ CGGGAAAAATTTTTCAGAGAGTTCGTCGAGGT 77939 28 100.0 32 ............................ TTGACGCGCTCGCGACCTATTCCAGCGCGCTA 77879 28 100.0 32 ............................ ATGGCGAAATTTACAGACGCACACGACCTGTT 77819 28 100.0 32 ............................ TGGCCGCGCACCCGCCCTTCGTCGTCGAGTAT 77759 28 100.0 32 ............................ AAATACCGGCTTAACGCTGTGTGGGATATCTT 77699 28 100.0 32 ............................ TCGGCGGGTTTTTTATCGTCTTTAGTCAAACA 77639 28 100.0 32 ............................ ATTTGGCCCCATCCTTTGCGAATCTGCTCATC 77579 28 100.0 32 ............................ TCGGGTTTGGCTCCAGCCTGGTTAACAAAGGA 77519 28 100.0 32 ............................ ATCACCCCGACATCGCGTGATCGCGATCACAC 77459 28 100.0 32 ............................ GATCAGCGTGAACTATCGCGGCTCGGCGGCAG 77399 28 100.0 32 ............................ GATTCGCGTAGCGCGTCGATACGCGCGCAGTG 77339 28 100.0 32 ............................ ACACTCCACGGCCCCAAGTGTAGCGAAACAGA 77279 28 100.0 32 ............................ AGAAGGCACGCTGTGAGAAAAATTCCGGCGCA 77219 28 100.0 32 ............................ ATGTGTTGATGACCTGCATGGTGTTGGAATGG 77159 28 100.0 32 ............................ CACCCGGCGAACGGCAGGAAACACCAGGCGGG 77099 28 100.0 32 ............................ AGAGGTTAGCCGCCTCTAACGTTTTGTTTATC 77039 28 100.0 32 ............................ GCTATACGCGTGCCGCCACTCCGTCTCACTCC 76979 28 100.0 32 ............................ AGATACGCCGGGCGCAGACCCTCTGTGCCCGT 76919 28 96.4 32 ..A......................... GTGGGATAACGTAACCGACGGCGTGAAAATTC 76859 28 100.0 32 ............................ TGCGCGTATACGGGCGAACGGCCGGCGCCACG 76799 28 100.0 32 ............................ AGCGCGCCGAGCGCCGAAAATATGCAGGCGAA 76739 28 100.0 32 ............................ GGTGAAATCGCTGGCATCCGCATCGAGTGAGC 76679 28 100.0 32 ............................ GCCAGATGACGGCGTCCAGGTGAACAAATCCT 76619 28 100.0 32 ............................ CGTGGGTGTGGGTAATCGAATTCCGTCGCATG 76559 28 100.0 32 ............................ ATCCACGCGGACTGAGAGCCGACTGCATTGCT 76499 27 89.3 0 .....................CG-.... | ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCACTGGCAGAATTAGAGGCCACGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCCTGCCACAGGTTCAGGGCTGGCGCACCGTGACGCGCGTACAGGTGAAAAGTAACCCCGAACGCCTGCTGCGCCGCTCGGTGCGTAAAGGGTGGCTGACTGAAGAAGAGGCGCAGCAGCGGCTTTCTGGTTTACAGGTGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCAATACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCGGTCAGCGGTACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGTCTAGCTAACCTGTTGATTTTTATAATGGGTTAGTGAGGCGTTGAAAAAAGGGTTTTTAAGAGGTAAGCAGCATTTATGTTTTTATAAACAATGGGTTAAGAATTTTTGTCTTCA # Right flank : ATCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACACCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCAGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 88421-87852 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTPD01000024.1 Cronobacter sakazakii strain MOD1_LR634 LR634_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 88420 28 100.0 32 ............................ TAGCATGAGTGAAAAATGTACGCCGCCTGTTC 88360 28 100.0 32 ............................ TTGGCGTATCCTGACCCATACTTACCCTTACC 88300 28 100.0 32 ............................ AACGCCCACGGTTACAATTACGTGTTCACGGG 88240 28 100.0 32 ............................ GACAACGCCGCCCGCGCCGACGCGCGCCTCGG 88180 28 100.0 32 ............................ TGTCTCAACTGGTCGATAACCACAAAGCAGGG 88120 28 100.0 32 ............................ TCTCGCCAGGCGTTTGCGACGTCACCGCCAAG 88060 28 100.0 32 ............................ AACTGCTCGCACTGCTTCGTCTTTTCGCGCAG 88000 28 100.0 32 ............................ GGTCGCTATCACGCCTGTAAAGGCCCGCACGC 87940 28 100.0 33 ............................ GCCGAAACTTTTAGCGGCCTTGCGGGCAACTGA 87879 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATGCGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGACGTTGATTTTTAATACGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAACAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAGTAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCACGGTAAAATTATCCATAAAATTTATGGTTTCTGCTGTACGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCGGAGCTAATTAGCTCATATAACGGCGATGACACGTAAGAACCACATTAACTACAGACATTTGCAGGTTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAGTAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAGTTGACATTTAGTGTCATTCATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATATTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 145911-144723 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTPD01000014.1 Cronobacter sakazakii strain MOD1_LR634 LR634_contig_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 145910 29 100.0 32 ............................. GTAACAGACTTACCGGCTGGGAACAGCGACAG 145849 29 100.0 32 ............................. GCCAGTGTCGGAAATAACAACGATCTTGTCGT 145788 29 100.0 32 ............................. TTCTTTTCTCCTGCCGCTGTTGACCTGGTTCA 145727 29 100.0 32 ............................. AGGCTTGTAACCAAGCCTCTTTTTATTTGATT 145666 29 100.0 32 ............................. ACACGCTGATTAACGCCTGGCCTTTGTGGGAA 145605 29 100.0 32 ............................. ATGATGGATCGTTTAGTTATCGTGGTAACATC 145544 29 100.0 32 ............................. ATTATTTTTATGCCAGCAATACGGACTATGCG 145483 29 100.0 32 ............................. GCGACCCGACTGCGCTACTGGACGCGGCTTTT 145422 29 100.0 32 ............................. TCTCTTACATTTGACGTACTGGACGCTACCGA 145361 29 100.0 32 ............................. ACGTTGTCATGAACGGCGGGTTGTATCCGGCT 145300 29 100.0 32 ............................. CTCACACTGGTTGCATTCAACGCAACATAGGA 145239 29 100.0 32 ............................. TACAAGTGGCCGCTTCCACAAATTCGCGAACT 145178 29 100.0 32 ............................. CCAGTTTTCCCGTCGTGGTATTTGACCCGCCC 145117 29 100.0 32 ............................. ATGAACCCACCGGAAGTAGGAAAACTTTCGCT 145056 29 96.6 32 ............T................ TTCTTCGACAAAGGCGGCAAGAAGAAGATCGC 144995 29 93.1 32 A...........T................ TCTGCGAAAATTGCCCCATTCTTCGAAAAAAA 144934 29 96.6 32 ............T................ TGGTCGAAACCACGACTAACGGCGGTAAGACG 144873 29 100.0 32 ............................. GGACGCCTCAACGCTAAGTGCAGCTCTACCCC 144812 29 96.6 32 ............................C AGATCCTGAAGCGCTGTCTGCTGGGCATAAAC 144751 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.1 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGGGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACGAATAATGAATCCGGTTTCGATTTCCAGACGTACGGCGTTAACCGTCGTATTCCGGTGGATTTGGACGGCCTGCGGCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTGGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGC # Right flank : TTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTCGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAATGGATAATTCACTCAGGCGATTACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 172622-171924 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTPD01000014.1 Cronobacter sakazakii strain MOD1_LR634 LR634_contig_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 172621 29 100.0 32 ............................. ATAACGAGAAAAAAACGGGTGAATCCTGAATG 172560 29 100.0 32 ............................. CTTTCATTAAGAAGGTATTTATTAATATGATC 172499 29 100.0 32 ............................. CTTCACCGTCGCGGGCATTAAACGGGCGGTTT 172438 29 100.0 32 ............................. CCATCATAATCATCCTTGCTTACTTTTGGCTC 172377 29 100.0 32 ............................. GAAGAATCGGAACTGGCAGCATCTTCAACAAC 172316 29 100.0 32 ............................. CGAGAATTTTTCCGCTGACTACATCCCTTGCG 172255 29 100.0 32 ............................. CGATTTAACCGCCAAGTCTCCCGGCTCCGGCT 172194 29 100.0 32 ............................. CATGCACCGGTAAACAGGTACCAACTTACTTC 172133 29 100.0 32 ............................. ATTTGTTGAAAGAATTATGCGAAGCAATCCGA 172072 28 96.6 32 ...........-................. CGGGAGTGATAACAGGTGAGGGCGAGGCGATA 172012 29 96.6 32 T............................ AACGCTGACCTGGCGAACACGCTGCAAAATCT 171951 28 75.9 0 .C.......-...C.T.C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGTTGACTGTAACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTTAGTACAAAGGGTTACTTTTAGT # Right flank : CCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTTTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCACGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 174253-174050 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTPD01000010.1 Cronobacter sakazakii strain MOD1_LR634 LR634_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 174252 29 96.6 28 ....A........................ ATTCACATCAAACCCTTCACGTTATGTC 174195 29 100.0 28 ............................. ATTCACATCAAATCCATCGCGTTATGTG 174138 29 100.0 31 ............................. ACACACGTCAAAATACCAGTCGCGCCTGTTC 174078 29 96.6 0 ................A............ | ========== ====== ====== ====== ============================= =============================== ================== 4 29 98.3 29 GTAGGGTGGGTAAGCGGAGCGCACCCACC # Left flank : CACCATCAAAGGCTCGGTGGATCGCGCCGAGATGCATTACATCATCCGCGATTTCGACCGCGAGAATTTCGAAGCGCGCAAACGCCGTATGATGGATATCGCGAAACAGGTCGGTAAGGGGCTGCACCCGGATTGTTATATTGAGCTGGCCATCGAGGACAGCTATTACAATATGAGCGAGAAGGTGGCGGAGCATCCGCATATCATCGAGATTGCGCGTCAGGCGATTGTCGATTGCGGCATGGAACCGCAGTTAAAGCCGATTCGCGGCGGCACCGACGGTGCGCAGCTGTCGTTTATGGGGCTGCCGTGCCCGAACATTTTCACCGGCGGGTACAATTATCACGGCAAACATGAGTTTGCGACGCTGGAAGGAATGGAAAAAGCGGTGCAGGTGATTGTGCGTATCGCCGAATTGACGGCGCAGCGGGAGGCGTAAAGGCGTAAAAAAGGCGGGTGCGCTGACGCTTACCCGCCCTACAAATTCAGGGATCATTTAT # Right flank : GCGATACCCGCGATAACCGACGCCTTACTCCGCAAAATACCAGTACCCGCTGTTTACCAGCGCGGCCAGCATTGCCAGGAATGACGGATCTTCCAGCGCGTCGCCAAACATCGCCTCATTCAGCACCACTTCATTGGCCAGTTGATGCAGCGCCGGGCGGTGCGGCGTATCTATCTTCTCGCCGTTCACAAAGACGTCCTCGCCGATACGCAATACGCGCAAACCGCCGAGACGTACCAGCGTATCACCCTGTTTCAGCGCATCGTAAATTTCATCCGGCTGGTACGGCGGCTCCGGCGGCGACACATCCAGCTCGTGACGCGACTGGGTGATAAACTCACCAAACCATTCGTTGAAATTATCCGGGTCGCGGATGAGATCCAGCATCATGTCGCGCAGCTTTTCGACTTCCGCAGGCACAATGTCTGCCGGACATTCGCGTGCGGGCACATCCGGATCGCTGTAGCGATGGCTGCCGAGCTCACGCTGCAACACATAAT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGGTGGGTAAGCGGAGCGCACCCACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA //