Array 1 570462-568984 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSOR01000001.1 Bacteroides fragilis strain TM08-15 TM08-15.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 570461 35 100.0 34 ................................... GAAAAAAATGAAAAAAGGGACCGTACAATTCATT 570392 35 100.0 34 ................................... ACAAAGAAAGAATTGCAGCGGTTGACTGAAAAGC 570323 35 100.0 32 ................................... TCTACCGTTTATTTCTTGCTTGATGACGATTC 570256 35 100.0 33 ................................... GTAAATGAGATTTATAAATTATTAATTAAAAAA 570188 35 100.0 34 ................................... GAAGCCGCATTAGAGTTAGTAAACGCATTAGTAT 570119 35 100.0 34 ................................... ACAAAGAAAGAATTGCAGCGGTTGACTGAAAAGC 570050 35 100.0 32 ................................... TCTACCGTTTATTTCTTGCTTGATGACGATTC 569983 35 100.0 33 ................................... GTAAATGAGATTTATAAATTATTAATTAAAAAA 569915 35 100.0 34 ................................... GAAGCCGCATTAGAGTTAGTAAACGCATTAGTAT 569846 35 100.0 34 ................................... ACAAAGAAAGAATTGCAGCGGTTGACTGAAAAGC 569777 35 100.0 32 ................................... TCTACCGTTTATTTCTTGCTTGATGACGATTC 569710 35 100.0 33 ................................... GTAAATGAGATTTATAAATTATTAATTAAAAAA 569642 35 100.0 34 ................................... GAAGCCGCATTAGAGTTAGTAAACGCATTAGTAT 569573 35 100.0 33 ................................... AAGAAAATCGTCCCCGATTTCAAGGATATTTGC 569505 35 100.0 33 ................................... TTTTTCCTGTCGCAAAACTCATCAGGGATGGCT 569437 35 100.0 37 ................................... GAATTATTTGTGTCGGCGCTCAATCCGCTCAAAGAAG 569365 35 100.0 34 ................................... AATATGCAATTCTTATGCCCAACGGGTATAAGGT 569296 35 100.0 32 ................................... AAGAAAATGAATAAAAGTAATAGCAAAAAACT 569229 35 100.0 33 ................................... GGAATTTTTATGATAGATGAGCTGCCCAAAATT 569161 35 100.0 34 ................................... CAATGATAGCCAAGATGTTTAAGGTCCAACCTCG 569092 35 100.0 39 ................................... ATGACAGTAAATATGTAAACGTAGACCGACGACGAAGGG 569018 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 22 35 100.0 34 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : CTAATATCCAAAGCATCTACAATGTAATTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAACAATGGTAAAAGGGGCTATCCGACTTTTGGGGACACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : ATATTGATAATCAGATTATTATAAAATATGTATTCTATCTGTATAAATATATAATAACTTATTATTCAGTTAGATAGATGAAGTGTTGAACTGATTTTCGCAAATGTACTCTTTTTTTCTGTAATTTAAATAAATAATTTGTAGAATATAGAGATATTTAATTGATTATCACTTTGATATGATCGATTCATTATTCGCAAATGCCTGCTTCATTTGTTATATTATAGCCTATTTCGAAAATAAGATTAATCTTATATTTATAATTATCAGATAATAAGTGTATTATGTCAAAGAACGAATTGCTTATTTGTTTTTTTTCGCAAATGATTTACTAATATACAAAAAAGCTAGTTCTTTCGTAGCTTTTATACATTATATATTATTTTTCATTTAAAAGAATAAGCAGAAAATCAATGAATTAAACAAATTCTGATTTTCGCAAGAGGTTTAGACTATTTCGACGGTTTTAATTATCTTTTTTCGTATAGGTTGATATATAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 799-2533 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSOR01000010.1 Bacteroides fragilis strain TM08-15 TM08-15.Scaf10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 799 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 876 47 100.0 30 ............................................... CGTAACCGTTAGCTTGGCGTTATGCTTGGC 953 47 100.0 30 ............................................... TTTGTTGAGTCGCTGGAAACGATTTCCTTG 1030 47 100.0 30 ............................................... CCTACCAATCGAACCTGCGGCGAAAAAGAA 1107 47 100.0 30 ............................................... CAGGGTCAGCGCTCCATCTATCCATTTTGC 1184 47 100.0 30 ............................................... TAACTTTTCTTTGTTGGAACTGATTAATAC 1261 47 100.0 29 ............................................... AGACCAGACAGGTTGCGTATCTGTATCAC 1337 47 100.0 29 ............................................... CACCAAAGTGAGCCTTAACCTGTGAGGCA 1413 47 100.0 30 ............................................... ACCGCCTACAAGACTATAACGGTCGTGCCC 1490 47 100.0 30 ............................................... AGGATAGACTGTAACCGTCTGACCATTTGA 1567 47 100.0 30 ............................................... GATAGAACGACGTGGTACGCATTAACAGAT 1644 47 100.0 29 ............................................... GTACTATTAAGATATCCCGCAACGTAGCA 1720 47 100.0 30 ............................................... ACCAAAATAATTATTAGGGAAAGAAGAACC 1797 47 100.0 30 ............................................... CAACGAGCCTTAACGGGATCCTGGGACCAA 1874 47 100.0 30 ............................................... GAGGAAGACGGACGTAAACCATTCAAATAG 1951 47 100.0 30 ............................................... AGAGGGTAAAGGCTCTAAACCCAAAGAATC 2028 47 100.0 30 ............................................... GGTAAATCTACAAGGGTTTACCTCTTCCTC 2105 47 100.0 29 ............................................... AGGTTGTGAGGTCAACCGTGAACCCATCG 2181 47 100.0 30 ............................................... CGTATTAGGTGAAAATGTTACTTACTCTGT 2258 47 100.0 29 ............................................... TTATATTTCAAAGGTTCTAAAGGCGTATA 2334 47 100.0 29 ............................................... TCAATTCCTTGGTTTCGGTCTTTAGTTCT 2410 47 100.0 30 ............................................... TTGTTTGATTACTATTACTCCCTCTCGTAT 2487 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 23 47 99.8 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGTTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGGATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CTTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 19133-19867 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSOR01000018.1 Bacteroides fragilis strain TM08-15 TM08-15.Scaf18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 19133 29 100.0 36 ............................. AGTCGAAGATTTGCTTTAACAGACGCTGTTCTATTT 19198 29 100.0 34 ............................. TAAATAGCACGTCGAAGGCATCGGTGCCGTCGGT 19261 29 100.0 34 ............................. ATCATAATCGCTTTGCCGTTAGTCGCGGCGTTCT 19324 29 100.0 37 ............................. AATAGACATTACCGGCACTTACGATGATTGGCTGGCA 19390 29 100.0 34 ............................. CAAGTCTGTGGGAAGACCGTACATAACTACGTGC 19453 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 19516 29 100.0 34 ............................. TAGCTAATGGAAATTCTACAGACGTGTCTTCTTT 19579 29 100.0 36 ............................. TTCGTCATACTCTGAAACAGAGCGACACCATTTCTT 19644 29 100.0 35 ............................. AAAGGTTTGAGAAATTTGTCGAGTGAATCGCTGGT 19708 29 100.0 35 ............................. AAAAGAGAGCACTTGATGCAAACGAAAAAGAGCTG 19772 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 19838 29 93.1 0 .........................G.C. | A [19862] ========== ====== ====== ====== ============================= ===================================== ================== 12 29 99.4 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTGGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAGCTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGTTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : TAAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGATTTTTTTCTTCTTTGCTAGCAACATCCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAAATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACATTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCGTGGATAGACGATACGATGGAAGGTATTGTTTTTGACTAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 184127-184274 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSOR01000005.1 Bacteroides fragilis strain TM08-15 TM08-15.Scaf5, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 184127 26 96.2 35 ...................T...... CATGATGAAGGTACATAACTCAAGCCACAAAAAGC 184188 26 100.0 35 .......................... CCTTGCTTATCAAACAAATACTTAGTATTTTTGTT 184249 26 96.2 0 ........................A. | ========== ====== ====== ====== ========================== =================================== ================== 3 26 97.5 36 TCAAATTCACAATATATTGGGAATTT # Left flank : TACCGACACCGGGGAAGTAAACTCCATACTCAGGCTGTCGGACTATGGGAGGAAGGGAACGACGGTATGGAAACTGATTGCCAACACTTGCTGGAGCGACATCGGAGCCAAAGGAAGATACCTGGTAGCGGCGCTAAACAAGGCGAAAAGAAGGTAGCAGAGAGTGTCAGTCCCCTATTTATAGTTGACAAAAAAGCAAGTATACAGGCTTTTGACCAGAAAGGGATTCAGTGAAACAAAGAAGTAAAAAGTGTGCTTAACGAACTAAAACACAGTGTTTTTAAAGCACAAGATTTCTCTCGCCCAAAGCTTTGTTTTAACGCTACGTTAAAGCTTGTTCTTTAAATGCAAATAGCAAGTGTTTTCAATGCAAAAGGCTTGTTATTTGCACACAAGAATAAAATAACGGAGAAATGGCGTTAACAATGTTAATTGAGAAACACTCTACAAACAAAAAGAAATCTCTGTCATTCTAAAATCAAAAGTACAAATAGCCGTAA # Right flank : TGAAACAAATTGGAATACAGATTCGCCAACGAAGAAAAATGTTGGGTATAAATCAGCAAACACTTGCCGATTTAGCACAAATCAGTATCAATACTATAACAAAAATTGAAAATGGAGAAATAAATATTAATTTTCAAAAGCTCTATGCCATATTGGAGGTATTAGGATTAGAACTTTCTCTGAAAATTAAAAATAAGGAGGGATATCTATGAGACAAGGAGTCGTATACTTGAATAAAGAACGGGTAGGCATTATTACGGAATTATCTTCTAACGAATATAAATTTCGCTATGATGACGAATATTTCAATGATCCATCAAAGCCCTCCATAAGCCTGACATTGACAAAACAACAACAGGAATATACTTCCCATTATCTATTTCCTTTTTTTGCCAACATGCTGTCAGAAGGGCACAACCGCATCGTTCAGGCAAGATTATTGCAGATTGATGAAAAAGATGATTTTGGTATTTTATTAGCTACAGCACATACCGACACGG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAAATTCACAATATATTGGGAATTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //