Array 1 4292032-4293157 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032304.1 Salmonella enterica subsp. enterica serovar Braenderup strain FORC93 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4292032 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 4292093 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 4292154 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 4292215 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 4292276 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 4292337 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 4292398 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 4292459 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 4292520 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 4292581 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 4292642 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 4292703 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 4292764 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 4292825 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 4292886 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 4292947 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 4293008 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 4293069 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 4293130 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4309416-4311522 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032304.1 Salmonella enterica subsp. enterica serovar Braenderup strain FORC93 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4309416 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 4309477 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 4309538 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 4309599 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 4309661 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 4309722 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 4309783 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 4309844 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 4309905 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 4309966 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 4310027 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 4310088 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 4310149 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 4310210 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 4310271 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 4310332 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 4310394 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 4310455 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 4310517 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 4310578 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 4310639 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 4310700 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 4310761 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 4310822 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 4310883 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 4310944 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 4311005 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 4311066 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 4311127 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 4311188 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 4311249 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 4311310 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 4311371 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 4311432 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 4311493 29 89.7 0 A...........TC............... | A [4311519] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //