Array 1 290024-291090 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFB01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2201 NODE_2_length_525457_cov_3.00377, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 290024 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 290086 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 290147 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 290208 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 290269 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 290330 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 290391 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 290452 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 290513 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 290575 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 290636 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 290697 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 290758 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 290819 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 290880 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 290941 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 291002 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 291063 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 307373-309270 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFB01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2201 NODE_2_length_525457_cov_3.00377, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 307373 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 307434 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 307495 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 307556 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 307618 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 307679 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 307740 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 307801 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 307862 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 307923 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 307984 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 308045 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 308106 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 308167 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 308228 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 308289 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 308350 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 308411 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 308472 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 308533 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 308591 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 308652 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 308713 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 308774 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 308835 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 308896 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 308957 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 309018 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 309119 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 309180 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 309241 29 93.1 0 A...........T................ | A [309267] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //