Array 1 460836-459788 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMY010000001.1 Vibrio metschnikovii strain M15D Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 460835 28 100.0 32 ............................ AATGGTTCTTTGCGAATCTTTCCACTTACTAC 460775 28 100.0 32 ............................ GTAGTGAAATTGTAACAATACTTCGTCAGCAG 460715 28 100.0 32 ............................ AGTGGTTAGCTCTTCGTCTGACACGATAAAAA 460655 28 100.0 32 ............................ TTTATTTAATTTTTTCTCTCTGGCGTATCTCT 460595 28 100.0 32 ............................ AGAAAGCGAGGGTGGGTACTATTATTCAGCAA 460535 28 100.0 32 ............................ CTCTGGAAGATATATATGCAAAAACAACCATA 460475 28 100.0 32 ............................ TTCAAGCTTCGCTTTCTCTAGTTCGTGCTGAT 460415 28 100.0 32 ............................ GTTTGTAAAGTGATGTTCGTCACATTCTGGAA 460355 28 100.0 32 ............................ TGACACTCATCAATAACAACAAGTGCACCAAT 460295 28 100.0 32 ............................ ATGAAAGCCCGAAGGACAGCTAAGCGGCTCCG 460235 28 100.0 32 ............................ GATGGATTCATTAATTGCGCTGGATATTGAAT 460175 28 100.0 32 ............................ TATCACTCGATGGGGCTTTTTTATGACATCCG 460115 28 100.0 32 ............................ TTCACGAACATCTAAAACTTCATTCTCTTTGA 460055 28 100.0 32 ............................ ATAATTACGCGAACAGCAATAACAGCAGCGAT 459995 28 100.0 32 ............................ GTGTTGATATTGCTTATGACGATTTGCATGGT 459935 28 100.0 32 ............................ AACAGCACTCAAACTTTTACCGCTGCCGAGCT 459875 28 100.0 32 ............................ TTTAATCATTCGAGTAACTAGCGCGCGGATTT 459815 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTTTTGCATGATTTACAAGGTTTAAACTGGCTTGGTCCGTTATCTGGTTACTGCCAAGTGAGTGAGATATTGGCTATTCCTGAACAGGTGCAATATCGAGTGATCTCAGTAAAGCGTAGCAATTTAAGTCAAGCGAAGCTCAGACGTTTGATCGCTCGCGGTAGCATCGATAAAGAAGGTGAAAAACGTTACAAAGTGAAAATGCTTAGCCAAGGTTTTGATAATCCGTACCTAGATTTATTCAGCAGTTCGACGAAGCAGGTACATCGTAAATTTTTTGAGTTTGGTGAAATACAGCCACTGCCAGTATCCGGAAAGTTTGATTCCTATGGGCTAAGTCATACCACTACGGTTCCTTGGTTTTAACCCTATTTTTTTGCTCTTTAAAAATAATCTTTAAATACAAATAGTTACATCGGGTGATTTAAAATAGGGTAAAAATACATTTTTTGCTCTAACTGCTTGTTGTAACTTATTTTTATGTTGTTATTCTATA # Right flank : CGCCGGATTCGATGGAATCAAACTCCCGCCAGTCATCCCCGCGAAGGCGGGGATCCATTCTGCAACAGATGCCAAGTGCTTAAGTGAGCGATCAATTGGCCACAGATTACTGATACTTCGCATAGATTCCCGCCTACGCGGGAATGACGGTTTGGTTGTGGTTTTGGGAGCTGAACTCCATAGATCCCCGTCATGTTTTGCCTGCTACTGCTGTGAGGCAGAAAATGAAGGCGTAGCGATCATCGAAAACTGATCCACTAAATACACTTAGTCAGCATAGATTCCCACCTTGAGGGCAATGATGCTTGACGCTTTGAATACTCGATTGTTCACCTTGATTACAAGAAAGCGTGAGTTGTTTAACAATATGTGCGCCTAATTCCTTAGACACTACGTTGTATGATTGATGTGAGTGGTGGAACACATGAGCTCCCTAACGTTACCTTGCCAGCGAGAGATTGATCTCTCATCAGAGTTAAACGTCGTATTACAAGACAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 11117-11624 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMY010000012.1 Vibrio metschnikovii strain M15D Scaffold12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11117 28 100.0 32 ............................ AGCAATGAAAACCTCTTTACTTGCGAATCATC 11177 28 100.0 32 ............................ GATCGCAGAAGGACCAACTCCCACCTTCGCAG 11237 28 100.0 32 ............................ TTGTTTATCACGATTAGTTAGTGATGAGTGAT 11297 28 100.0 32 ............................ GCCAGAGTGTAAAAGACTAATGAGAATGTATA 11357 28 100.0 32 ............................ ATGGCTTTATTCATGTCGCGATTCATATTGAC 11417 28 100.0 32 ............................ TAGATTGTGTAGGCGTGCCAAGTGGGTTTTAC 11477 28 100.0 32 ............................ TTAGCTTTCGATTTAGCGTGGTATGCGTAGCT 11537 28 100.0 32 ............................ CCGAAATTAAAAAGCATTTCGAAGCGTCTTTT 11597 28 89.3 0 ......A......C..........A... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CAGATATTATTCACAATCAATTTTATAATAAATCAGTTGATTGTGTCGCTGTCACCCTGGACAAAGAAGTTAAAGATGGATTTTATAAAGCTACAGCGACACTGACCAATGGTAATGATATCGACATTACTGTAGATCTTCGTAAAGATGGACAAATATATGTTCAGATTCCTAATCAGTAATTCAAATTAAGGATGCTTAACTCCCGCATTTTTGTGAACAAGAACGAAATATAACAAACGGTTCAAGAGGGACAGCCAACGCGTGGCATTTTTATTATGCGTTGGTTTTTCTGATTACGGTGTTATGCGGAAGCTTGGTAGTGGCGTTGTCTGCCCCTTAACCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : AATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCGTTGATTTTATTGGTTTTTAGTGTAATGCGGTGAGTTGGTAGTTGCGTTACTCACCCCTTAACGCGGCGTTATGTGAATATGTGGGTTTTGTGAACAACAAAGAGATTGATAATGGTAAATTTTACTTTTGGGAAGTGGGTTTCTGAACCGAAAGTCAGTGAAGTAACTTCCGAGTTTGTTTCGATAACAACCGAGCCGAAAACTGATTTTTGGCAACGTTCTTATTATGGATTTCGTAATGAAAATGCCCCTGCACTATTGATTGATTCAAAAGATAATTTCACCTTTACAGCTAAGGTAAGTTTTACTTATCAAGAGCTGTTTGATCAATGTGGATTGATCATTTATCTCGATAATGAAAATTGGTTTAAAGCTTCGATAGAGTACGAAAATCAATCATTTTCTAGGCTGGGTAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 948-1216 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMY010000050.1 Vibrio metschnikovii strain M15D Scaffold50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 948 28 100.0 32 ............................ TGAAAATCCACAGCGTAATATCGTTGTCGATA 1008 28 100.0 32 ............................ TTTACTTTTTGTGGTTTGGTTTTTGGTGGTTT 1068 28 96.4 32 ...T........................ GCGAGTGGTCACAGCAAACACGGCTTTTACAA 1128 28 100.0 32 ............................ GTTAGACATGGCAAATGCTGCACGTAGATCAC 1188 28 100.0 0 ............................ | A [1210] ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TAAAGGTATTGCTGCTAAAGCTATACCGTTATGGGTATCGTACTTATTTGCAAGTAAAGAAATCGAAAGGGTAGGGTTAACCACTTGGTCAGGTAATCCTCGAATGATGTCACTCGCATTGAAACTGGGTTTCGAGCAAGAAGCTAGGCTTCGAAAAGTACGTTACTACCAAGGTAAGTACTACGATTCGGTCAAGTTTGGTGTATTACGATCGGAGTGGTTAGAACGCAACTAACAAGGCGTTAAAGAGGGATTCACAACGCGCGGCATTTTCATTATGCGTTGATTTTATTAGTTTTTAGTGTAATGCGGTGAGCTGGCAGTTGCGTTGTTCACCCCTTAACGCGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGAGTTTTAAGTTATTGATTTATATTACTAATAAATCGAGTGGGAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATGAGTTACTGATAAAGTTTCATA # Right flank : TTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTTAGTGTAATGCGGTGAGTTGGTAGTTGCGTTGCTCACCCCTTAACGCGGCGTTATATTTTTTTTAAGTTCAGCAATCAAAAGGATTCATGATGAACGTGGATAAGGCGAAAAAACGCATATTGAAACGAGTACAAAGAGGTTTCAAAGGTTATCCGCAAATATCTTTAGAGTAT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //