Array 1 94561-94307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRN010000023.1 Leptolyngbya sp. FACHB-238 contig23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 94560 38 97.4 35 A..................................... TCGAGAATGAGTTGGGGAAACCCCACCAATGCTCG 94487 38 100.0 33 ...................................... TTGGGATGATCAGCAGCTCAATCAGTACGCCGA 94416 38 100.0 34 ...................................... AAAAGATGATGCTTGTTGTGCCAGCTGATCGGAT 94344 38 92.1 0 .A....A.................G............. | ========== ====== ====== ====== ====================================== =================================== ================== 4 38 97.4 34 TGTTGCGATCAGCCTCCCACGAATAGGTGGGCTGAAAG # Left flank : CTGAACTGTGAAAAATGAGGGTCAGTTTGGTCGTTGTGAGACGACTGTGCTTTCCGACCCTGGTAGCTGCCCGCTCGCTGACTGCCATCCTGGTACAGGTTTCGATTTGAGATTTGTGTGGGGATGGGAAGCTGTAGTTGTGGAGCCCGTTCTTCAACTATAGCGCAGGTGCGCGCCCAGCAGAAGTGAGTCAAGCCTCCACCTCGTGAAGGCACAGGGGCATTATCTCATCAATTACTTGGTGCTGATAGTGTGACTGAAGTTGCAGCTACTGAATCGCCTCCGAGCAAGGAGGAGTCCTCCAATTCTTTTTGGCAAACCGCAGCGAGGGCAAAATCCCCGGGAGGTTCGCCAAACCGCTAGGAGCCACTACTAGTGAACCTTTCATCCAGTTGAGGTATGTCGAAGTAAGTTTTCCAGAAAGTTGAAAGAGTACTTTTTAGCGAGGTTTGCCAAAAGGCAGCTTGGAAAGCTTACAGGAGAAGAATTCTAGCGCTGGG # Right flank : CTCAGAGCAGAAAGTATAAATACTATGAGCTCAATGTGATTGTTGAAACATCAAATTCAATTAGCCTCAGCAAGAGGTAGCAAGTTGAATTTATAAACTACTTAACTACTAGCAACTTAATAAATCCAAACCAAAAGAGCTAACACACTAATATTTTCTATTGGAGGACTGAAAGGTGCATTCGATTCGTAATTGGTCAGCATTCTTTCTTGATTTCAAGTGACATAAATCTGCAAGTCGCATTATTGAAACAAATAGCGACATTAATCTGCGAAGAGCAGGGATTTACTAATTTGCGACACTAATTTGCGAAATGATATCCATATTGCCAAAAATCATCAAAAACGACATTAATTTGCGAATTGCGACATTTAATGTGCGAACGTACATAAAAAGCCGATGATGGGATTTGAACCCATGACCTTTCGATTACGAATCGAATGCACTACCACTGTGCTACATCGGCAAAAGGCCTCATGCAGTATAACAGATAATCGTTC # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGCGATCAGCCTCCCACGAATAGGTGGGCTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 162104-161546 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRN010000006.1 Leptolyngbya sp. FACHB-238 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 162103 37 100.0 36 ..................................... ATTCGGAAACTCCCTGCACAACTCGGCAAATGCCCG 162030 37 100.0 37 ..................................... TCCCCTTAACTAGGCATGATATGCGATCGCTGCTTAG 161956 37 100.0 36 ..................................... GCTAGGAATTTATCTGAAAGATATCCCTCGACTGCG 161883 37 100.0 43 ..................................... GAGAAGCCAAACAGACTTAAGCCTGCACAAGCAATTCACTCAA 161803 37 100.0 37 ..................................... AAAGTATGAGAAAGTTTCTGACGCAATATCAGAGAAC 161729 37 100.0 36 ..................................... CTCAGTCGAAAGTATTGCTGAGGCGTTGGGGATAAA 161656 37 100.0 36 ..................................... GGCAAGGTTATTGCCGTCAACGAGCAGTATCAACAT 161583 37 100.0 0 ..................................... | G [161548] ========== ====== ====== ====== ===================================== =========================================== ================== 8 37 100.0 37 GTTTCATCCAGGTTTGCGGCAAGGGGGCGATTGAAAG # Left flank : CCTCTTTCAGGCACTCCTCAAGAGAAAGCAAGAAATTTAGCGATCGCAGCATACCAATCTCGAAAATAGAAATTACTTGCAATTAGTTCAAATGTATTTTATAAATAGAGTGCGCCGTGGTTCATGCTAGCAATAGCCCCTGTGCCATCGACAATTACGAGCTAGTTTGACTGTCGGAAGATAGTCTTGCTTTCTGGCTCAGGTTGACTGTCTACCTCGAAGTTGGGTGCGCTCCCAGCAAAAGGGTGCGGGTCTACCGCAATGCTGGTTAGCCAATCTCACCTCCGAGCAAGGAGGAATCCACCCCTAACTTTTAACTTGTTGGCAAACCGAAGCGAGGTCAAAATCCCTAGGAGGTTTGCCAATCCGTACAAACTAATCCCTTCAGCAGCTTTCCACAGCATAAAGCTGCTTCTTGTCCAACAAAAAGTATCGGATTTAGAGGGGTTTGCCAAAACCATGTTTGAAAAGCACACTATGGCTGCACCTTGAATGGCAGG # Right flank : TAACTTAGTCTTTTGACAACTTTAATAGGCACAATCTTTCGGTTAACAGTGGGTGGATTGAAAGGACTGCCTGACTCGGGGTTTTAATTTAGAAATATTTGCCCCTCGCTATAACGAGCAGAGTTAGCATTCGTTTTAACTGGGTAGAGTCTGTACTGTAAAATGTTGAAGTGGATAAGAATTTGAATGAGCATTCAACTGCTTGAAGCTCTGATGACAAGAATTTGTTAACGAATGATTTCTTACCCCTCGACGACAAGAAGCTGTTAAAACGACACTAAATTGTTAACGACGACATCAATCCGTTAACGACGACAAATAAAGTGTTATTCGACAACAATCACACGAATTTAAACAAAAAATTGCCTGACTCTTAAAAGCCCCCAGAGTCAGGCAGTCTACCTGTAAGGCACGCCTTTAACCGGATACACCAAACAAACTTAGTTGCCCCCTAGTTGCTTAGCTTTTCCGAGTGCGTTCCTCAGATTTGAATCTATTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCCAGGTTTGCGGCAAGGGGGCGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 1 6832-6433 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRN010000039.1 Leptolyngbya sp. FACHB-238 contig39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 6831 36 100.0 33 .................................... CTTCCAGTTGCGCCACGGTCGCGATTGCATCAA 6762 36 100.0 35 .................................... TCATTGCACCTTTAATAGGCAAGCCAAATGCACTT 6691 36 100.0 36 .................................... ATACGCCATTTTCCATTAGCAGGGTTATAGGTTCGA 6619 36 100.0 37 .................................... GATGTTGATTCCTTCTCCCGAATTAGGGTCGGTAATG 6546 36 100.0 42 .................................... CGCAGTGCCCTCAATGATATCCATCAGTGGATCCGCGATATC 6468 36 94.4 0 ............................G......A | ========== ====== ====== ====== ==================================== ========================================== ================== 6 36 99.1 37 GTTCTCACTCGTTGGGAACCACAATTGAATGGAAAC # Left flank : ATTGAATGGAAACACTCGACCATAATTCTTGAAGCAACTTTCCTAGCCTCTTGACTCAGGTCTCCATTGATGGGGGCAAACAATTGAATGAAAGCTCTGCCTAATATCAACATTGATGCCGCGCTATAAATTCTATGAACCGTTTTGATTAGGAGTGACTTACTGGCAGCTAACAGGCACTTTTGTCATGTAATGTTTGAAGCTGTATTGTGTTCTAGCGCCTTTTCTAAGTAAGTGTCTTAACTATGTATCCTAACGATCGCTTAGTAAGAATGCTCTCGAGCATAAGACCATAGATTATTTCAAAAGTTGGGAGGGTCAGACAATCGCTGAAAGCTTGATTCTTTCGTTGACCCTCCCAAATAGCTTGCTAGGAGGAAGTTTCAGCCGTTTTTTGTTTGAATTATTGATATTGAATATCAATAATTGACAGATGAATCAGACCCCTGCGAAAATATAGGTCTGAGATGCTTTCACATAGAGCGTTTCAGACTCCGACC # Right flank : AACCGGACAGCTTAGTTCGATCTCATTCCTGAATACTGTTGCATCATCAAGTCAGCCAGGAGCCAACCTCCCTCAACCTGCAATGTTTGATGCACCCCTTCCATCACTGTTGCAGCAACAACTAAACCGCTTGCTTTCGTCCAATCAAACCGACGGCTGAAGCCATCAGGGATCACAGAAGACGATCGTGGTGCAACTGATAAATTCCAACCCTCTACGATTGCTCGATAAAGGTAGCCAACTAGATTCTGAATCGTGCGCGGCTTTTGCTAATCTTTTAAATAAACGATCGCAGGTTCAACCCGCTCTGAGAATTCAGCGATCGCTCTAGCTATTTAACTTCCGAATATTTCCCAGAACCAGCTGAGGCAGTACAGTCTGCCTTAGACCTTGGCACTTTCTCCTCAAAAGCTTGATCGAACTTGAGTCATGAGTTGATCAATCGCTTTAAGATCTGTGCAACAACATGCAGCTCATTGCCTTCGACGGTACTCAGAGTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCACTCGTTGGGAACCACAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 8761-7237 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRN010000039.1 Leptolyngbya sp. FACHB-238 contig39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 8760 36 100.0 42 .................................... AAGAGTCGCTTCTTTAGTAAAGAAAGCATTAAGCTCAGCTTC 8682 36 100.0 38 .................................... GAGCATACTTTACCAGCCCATTGAATTCCTTCTACAGT 8608 36 100.0 41 .................................... AAGGTTTGGATTTGCATTATCGTGATAATGCTTATTAGCTT 8531 36 100.0 38 .................................... CATTTCTTCTAAAGTAGAAGGAACAGGTTCGAAGGGTT 8457 36 100.0 41 .................................... ATAAGATCACCCACAAAAGAAAGCTGATATTTATTACCTAA 8380 36 100.0 41 .................................... CCGGGATTAATCCCAGCCAAACAACTCCAATTTCACTGGCT 8303 36 100.0 40 .................................... GTCAGGGTTGATACCATACGCACCAAGATATTCTCTCCAC 8227 36 100.0 41 .................................... ATAATTTGGGGGGTAAGCTGCGCCAGCAGCAACATACGGTG 8150 36 100.0 49 .................................... TCACTTGTATTCCTGTTGAGAAATATAAGGAAGCTGCTCAAAATGTGAG 8065 36 100.0 41 .................................... ACACGATCGCCCCTCTTCTCTGTCAATCCCTCATAATACGC 7988 36 100.0 46 .................................... TTTCCACCTCTTTACGAGAGGAGCCAATCAAAGCTTCGATTTCTGA 7906 36 100.0 40 .................................... TTGCTGTATACATGGATCTCTAGCGTTTTTCTTGTGGTAC 7830 36 100.0 46 .................................... GCACAGACACTTACCTCCGGGGACAATCCCGTAGTGATCGCAGTGG 7748 36 100.0 43 .................................... TTTAACTGGTTACGCATGAGCGTAAGATGTTGGATGTCTTCCG 7669 36 100.0 39 .................................... CTTCAATCAACATCCGGGTGGCTTCTAATCGTTGCTCAA 7594 36 100.0 52 .................................... TTGAATAATTTGCTGAATAAACTGAGATTTTTGATGAGCTGTCCAATTGCAA 7506 36 100.0 41 .................................... CCCTACCCAAACAAGTCATCAAGTCCGCCAAGATTTCTGTT 7429 36 100.0 39 .................................... CATCGATCGTGCGTCGAATCGTCGGATGATTACGAAATT 7354 36 100.0 46 .................................... ACTCGACCATAATTCTTGAAGCAACTTTCCTAGCCTCTTGACTCAG 7272 36 94.4 0 ...............................A..G. | ========== ====== ====== ====== ==================================== ==================================================== ================== 20 36 99.7 42 GTCTCCATTGATGGGGGCAAACAATTGAATGGAAAC # Left flank : ATCTGATTCGGTGAAGTGGAAGCGGGATAGATGCTAATTTATGTAGTGACCTATGATATTCCGTCTGATAAGCGGCGGAAGAAGATAGCGGATTTGTTGGAAGGATATGGGCAGCGGGTGCAATATAGTGTGTTTGAATGTGCACTTTCGGCTGTGAAGTTCAAAGAGCTTCGGAAGCGATTGCAGCAGCGCATTAAGATCGAGGAGGATAGTGTGCGGATGTATCCGATTTCGCAGCAAATGTTGCAGCAGGTTGAGGTTTGGGGTGGAGTGGAAATCGTGGAACCGCCGGGATCAACGATCGTCTAGTGTCGTATTTGCTGCGAGGCTCAGGAGATTTGCTTGGAAGATTCATTATTTCGTTGGGAGCCTCGCAGCCTTTTGTAATAAGAGTTTCAGCGTTTTTTTAGGAAGTCAGAGAGCGCATTTTTTTTGTTTTTTGCTTGACCCTCGCAAACCGAGCCTAGACATCAAGCAGGGTATAGGTTTCAATAGGAGGG # Right flank : TCTGCCTAATATCAACATTGATGCCGCGCTATAAATTCTATGAACCGTTTTGATTAGGAGTGACTTACTGGCAGCTAACAGGCACTTTTGTCATGTAATGTTTGAAGCTGTATTGTGTTCTAGCGCCTTTTCTAAGTAAGTGTCTTAACTATGTATCCTAACGATCGCTTAGTAAGAATGCTCTCGAGCATAAGACCATAGATTATTTCAAAAGTTGGGAGGGTCAGACAATCGCTGAAAGCTTGATTCTTTCGTTGACCCTCCCAAATAGCTTGCTAGGAGGAAGTTTCAGCCGTTTTTTGTTTGAATTATTGATATTGAATATCAATAATTGACAGATGAATCAGACCCCTGCGAAAATATAGGTCTGAGATGCTTTCACATAGAGCGTTTCAGACTCCGACCGTTCTCACTCGTTGGGAACCACAATTGAATGGAAACCTTCCAGTTGCGCCACGGTCGCGATTGCATCAAGTTCTCACTCGTTGGGAACCACAATT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCATTGATGGGGGCAAACAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 14053-10612 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRN010000039.1 Leptolyngbya sp. FACHB-238 contig39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================================================================================================================================================== ================== 14052 36 100.0 37 .................................... TCGAGAACGTAACGAGAAGCAACGGACATAGAGCCAG 13979 36 100.0 38 .................................... CTACGATCCGGCTGACTACTAACCCCAACGCGCAGCAA 13905 36 100.0 41 .................................... TTCTCAGTTTACGATTGTGGCGTGATTGTGGCGTGATCGGG 13828 36 100.0 48 .................................... CTGAACCATTTGTAACTTACTCAGCTACTTTTTAATTCTTATTTTAAG 13744 36 100.0 37 .................................... CTCTTCCCTGTCTTCCGTTCCGCTGCAACGTCTCGAT 13671 36 100.0 44 .................................... TCACCAGAGAATGCCATCTGCATTAGTGCACCCCCCATATTCTA 13591 36 100.0 43 .................................... TGTAAAGCTCTTTCATAGCTTCAAATCCTTTACTGAAGGTCGG 13512 36 100.0 40 .................................... ATGAAGCGCTTAGTGCCTTTGCTTTGAAACTTCAAGAATG 13436 36 100.0 43 .................................... ATTTTACGCCCTTCAGAAAGAATCATTTTTGACTCAATAACTT 13357 36 100.0 43 .................................... CGCGGATGTTCCCCGTCTTTGAGGGCATTCCGGTGGTCATGGA 13278 36 100.0 42 .................................... GTTGGTTTGTAGCGATTTGGCAATTGATACATCGCTCTCGAT 13200 36 100.0 38 .................................... CTTGCCATAACTGACAGACAAGGTGTCAGGGGATTTGC 13126 36 100.0 40 .................................... GCTGTTTTTCTCGACCTGGAATTAGAAGCCTAGCTGGAAA 13050 36 100.0 40 .................................... CATCAACTGCGGTGTCAGATTCTAAACCATAACCATTGTT 12974 36 100.0 44 .................................... AGTTCTGTCTATGTTCGTGACCGTTGTTTCTAATCCGCTAGCAA 12894 36 100.0 52 .................................... TTGATGCATTCGTAGGTCGCAGTTCAGTAAGTGGTGATCACTTCGAGCGTGA 12806 36 100.0 40 .................................... TTGGGTAAAGGGAGCTGATCGGGCGTTTGAATCGACTGTA 12730 36 100.0 38 .................................... CCACCCACACGGGGGGACGGGCGCTCCACCTATATGTA 12656 36 100.0 45 .................................... GGAATGGATCAAAGTTGCCATTTGCATCCAAATAGATAGGATCAA 12575 36 100.0 42 .................................... ACGGTTAGCGTTCTGCTTACCAAAGATTTTCCAAATAGGCAT 12497 36 100.0 48 .................................... TTCAAACTGCTCGTCAAATACCTCATCCCCTGCATGTCCCATCTCTAG 12413 36 100.0 36 .................................... TCATTAATCAGCGAAAGACTTCTTACTTGCGGCGGT 12341 36 100.0 36 .................................... TCACTTGCAGCCGCTTTGATTTCGGCTAATTCCTGG 12269 36 100.0 37 .................................... TGAAGTTCAAAGCGAGTCCAACTTGTTCGAGTGTTTT 12196 36 100.0 36 .................................... ACAGTTCAGGCAACGAAGCTTGCGGCGAATTGCGAC 12124 36 100.0 34 .................................... ATCACAAGCTTGTATCCAATAGAAGGTGTACCCG 12054 36 100.0 45 .................................... TTTATGGGTTTTTATCGAATAGATTGGGTGATAAAGGCTTATCTG 11973 36 100.0 37 .................................... CAAATTTGTATCAGCAGCAATACTAATTAGTCTTTCA 11900 36 100.0 40 .................................... GCCAGCACAGCACACATGTCTTAGCCTCAAACGTGGGGAG 11824 36 100.0 35 .................................... TCCAAGAACAGAACGCAAAATCTAATTGTTTTAGT 11753 36 100.0 42 .................................... ATGAAAGATGTGCAGATTATGAGTGCCAAGATTGCATCACAA 11675 36 100.0 39 .................................... CCGCGCAAATTGCTCACTGGACACAAACGCAGAGCGAAT 11600 36 100.0 39 .................................... TACTTGTATTGCTCGAAGTTGATCTTCGGTGCCGTGAGT 11525 36 100.0 42 .................................... TAGATCTGAATCTAAGATCAAGAATCTGAATTAAGATCTGAG 11447 36 100.0 36 .................................... CTAAGAAGGTAGTAGTCAAACGCTCCACCATACGAG 11375 36 100.0 48 .................................... TCTAGAAGTACATTATTGTTAATTACTGGCATTTAATATCTACCTCCA 11291 36 100.0 40 .................................... TGAAATATTAAATAATGGATGCTCTGAAAGTAAAGCTACA 11215 36 100.0 39 .................................... CACGATCATTGCTATTACCAGAGCCAATAAAATTGATGC 11140 36 100.0 35 .................................... CTGTATCTTTTCTAGCTTGATCTAATTTCTTTGAT 11069 36 100.0 39 .................................... TAGATAAACAGGATTGTGTCTGCATCCTGTTCAATGTTG 10994 36 100.0 41 .................................... GAATCGAATTGATGTAATTCTGCCTTTCGATGGTCATAAGA 10917 36 100.0 234 .................................... TGAGCATTGAGAATTACTCTATAGATCAAATGAATGGTAGCGATACTGATTCTCAAAAACGTCTGAGCCAGCATTTTCATCTACCAGCCCATTCTCTAATCAAGCCCTTACAAGGCGTCCTTTCAGTCACAATCAGCCAAACCAGATCTAAGTAACATTGATGTAACAAATTTATCCAGTTTCCCGCATTGCCACTACAATACCTTTGGCGAAAGCGCAGTTAGAACGATCAGG 10647 36 69.4 0 ......C.C....C.AA..CC.C.....C.A...C. | ========== ====== ====== ====== ==================================== ========================================================================================================================================================================================================================================== ================== 43 36 99.3 45 GTCTCTTTTAATAGAGGCAATTAATTGAATGGAAAC # Left flank : CTTGTTTCATCAGTTGAAAGGTTTAGAAGGACAAGAAAAAGTATTTGAGAACTGGCAGTCACCGAATGAGCCAAAATGGAAACAAGATCCTGAAGGTCATTGGAAGCTGAGGGTGTTGAAGTGTTTAAACTTCATCTGTGGAGAAAACTTTAGCTCTCTTGAAGAAGCCAGTTTACTTGTGAAGGTGCATCAGAAAATAGAAAGGGCGATCTCTCAACTATAATGTTGTTCCGTTCTGATGAGTTCGATCGCTTAAATCGACAGATTTTTCAACTGCTCGATCGTTTAGTTTGATGGGGATAAGTTTTGAGATGGAGGGGGTGCGAGGCTGGGGCGATTTGGCTGAAAGGGTGATTGTTTCGTTGGGAGCCTCGATGCCTTATGGGATAAGGGTTTTGCCGCATTGTTTGGGGTTAAAGTTGATGAAATTATTTGTTTTTGGACTGAGCCTCGCAAACCGCTGCTGGACGTTAAGCGGGGATTGAGTTTCAATGGAAGGG # Right flank : TGCGCCAGTTAGTTCGATCGCTGTACAACAATTTTTCCCACCCGCGATCGCATCACTCTATCTTTCGCAATTTGATCAGGGAGCACAGACAATGATCATCTACAGAAAAACCTCATGTATCTTTCAAATCGCGCCCTACAAGTTCGCAATGCCTCGATTGCCGGAATCAGCGGAGCCTTAACCTTAGTTATTCTGCTGATTGCTCCATTAGGATTAGCAGCCGTCATCATCAACACCCTGCTTGTCACGATCGCAACTTTTGCCACCGGAACTGTCGTCGATCGTGTCGTCATTTCAATGCAGCGCGATCGTAATTTACCTCCAACTGCTGACCTTCGCAGACGAGAAAGCAGCAATGTGGATCGATATCGGTAGTAGGACGCAGTCGTGAAAACGCTCTATGTTTCTCACCAGGGTTGCTATCTATCACTGCGACAAGAATCAGTCTTGATCAAACGAGGTGAAACGATTCTGGATCAAGTTCAGTTGCCACTGCTAGA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTTTTAATAGAGGCAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //