Array 1 61416-59749 **** Predicted by CRISPRDetect 2.4 *** >NZ_FAVE01000005.1 Campylobacter hyointestinalis strain 006A-0091, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 61415 30 100.0 36 .............................. TAAATAACTTTAACGTCCTTATTTAAATCTTTCATT 61349 30 100.0 36 .............................. CGCTCTCTTTGCGTGGCATTTGCTGAATAAGCATAT 61283 30 100.0 35 .............................. CTCTAAAAGCAAAATATATGCTAATGCAGAGCTAG 61218 30 100.0 36 .............................. TAAATGGGGTGGAGTATGATAACTTCAAAGCCTTAC 61152 30 100.0 35 .............................. AAATATCTTGATGAGGACTATCCACGAAAAAAAGG 61087 30 100.0 34 .............................. ATCATAAAAAAATCACGGAAATGATGAAAAATAA 61023 30 100.0 34 .............................. CTTTTGAATAATTTTGAAACGCATAATAGAGCCG 60959 30 100.0 36 .............................. GCTCACCAGCCTTCAAAGTCACGCTTTTTGCTAAGA 60893 30 100.0 35 .............................. ATACCGTATAAATATCTAACAAACGGCGGAAACTT 60828 30 100.0 34 .............................. CTTCAAGCCCTGCTATGGCAATATAATGATGCTG 60764 30 100.0 36 .............................. GAATATTCTTTATTATTTTTATTCCGTCGGCTACTT 60698 30 100.0 39 .............................. AACGTTTTAAGTGCATTTGCGTCAAATGCTGAAAAAATG 60629 30 100.0 36 .............................. TATTTTGTGTTTGATAGAGAGCTAAAAAATGATAGA 60563 30 100.0 36 .............................. TATTTTTGCAATAATAATCAAAAGCATACTGCCACA 60497 30 100.0 33 .............................. ATTTGATTTCATCTCGCAATATAATAGCATCGC 60434 30 100.0 37 .............................. TTTTTCATCATTTTTATGATTTTTTTGTGATTGACTA 60367 30 100.0 35 .............................. CCATCATTTCTATGGTCTTTTTTAAAAACGCAATT 60302 30 100.0 35 .............................. TATCCCCATTTTTTGATAAGTTTGGTAATGCAGGT 60237 30 100.0 37 .............................. TACTGGAGCAAGGGCTGGAGAGGTACTTGGCTTAAAA 60170 30 100.0 34 .............................. CCCTGAGCCAATTAACAAGCTTGATTTGCTCTTG 60106 30 96.7 35 ......................A....... TTTCATCTACCAGCACCAAACTATAAATAAGCAAA 60041 30 100.0 35 .............................. CCATCATTTCTATGGTCTTTTTTAAAAACGCAATT 59976 30 100.0 37 .............................. TCTGAAAGTCCTTTTTTTGTTCTTATTTCAACCATCA 59909 30 100.0 36 .............................. TCTGGATATATTTTTGAATCATTTATTTTCCTTTTT 59843 30 100.0 35 .............................. AAAAATATCTTTGCAAGTTTGGCAAAGAGAGGCAG 59778 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 26 30 99.9 36 GTATAAATTTATCCTTTTAGGATTTGAAAC # Left flank : TTTATAAATACTATATTAAGCCATTTTTTACTAAAATAAATATAGTAAAACTTGGTACAAAGTACTAAATTTAGCTGTTTTTGTTGC # Right flank : TAGGGCTATATTTTGCGTATAGTTTTACCATAATTTTTATAGCTAAATTTAATCGGTTTTAATAGTGCTTTAAAATCTTTGATTTTATATAAAATAAGCAAATAATAATTGCAAAAAAGCCGATTGATTTAATTCACACCAAGGACTAAATTTGATACTTTGTGATACAAATTACCCTAGTATTTTAGATGATATATGCGATGAGCTTACTAAAGCAGAGATTGAGCTTGTATTTGTTAGTAGTGATGAAATGCAAGAGATAAATAAAAAAGAGAGAAATATAGATAAAACTACAGATGTGCTTAGCTTTCCACTTGAGTATGTACCTCATTTCCCTATTGGATCTATTGTTATAAACAGTGATTTAGCTAGTTCAAAATCAAAAGAGCTAGGGCATAAAGTAGAAGATGAGATAGCTTTATTATTTACTCACGGACTGCTTCACGTATTAGGATTTGATCACGAGAATGATGATGGAGAGATGAGAAGAAGAGAGATAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATTTATCCTTTTAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 10048-8262 **** Predicted by CRISPRDetect 2.4 *** >NZ_FAVE01000008.1 Campylobacter hyointestinalis strain 006A-0091, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 10047 30 100.0 35 .............................. GCTCTGTTTGAATTTTAAGTAGTTCTAGCATTTTT 9982 30 100.0 35 .............................. GTGTTTTTGTGATAATACTCATTTTTTAGCCTTTT 9917 30 100.0 36 .............................. TAAATAACTTTAACGTCCTTATTTAAATCTTTCATT 9851 30 100.0 36 .............................. CGCTCTCTTTGCGTGGCATTTGCTGAATAAGCATAT 9785 30 100.0 36 .............................. TAAATGGGGTGGAGTATGATAACTTCAAAGCCTTAC 9719 30 100.0 35 .............................. TGGGATACCGCAAAACAGAGAGCGGATTTTTGTAA 9654 30 100.0 35 .............................. TGGGATACCGCAAAACAGAGAGCGGATTTTTGTAA 9589 30 100.0 34 .............................. TATACGACTTTAACGTCCTTATTTAAATCTTTCA 9525 30 100.0 34 .............................. GCATATTTTACGAAGCCGTGTTTTTTATTTAGCT 9461 30 100.0 33 .............................. GAGATGAGTTCGCTTTTTTGCAAAGTTGTAAGA 9398 30 100.0 34 .............................. AAGCTTCGAAATCTTGATCTATAGGCTCTTTTTC 9334 30 100.0 36 .............................. TTTCGGTCTTTGCGTGTCTTGCATTGACGCCCAAAG 9268 30 100.0 33 .............................. TCAAAAACTATTACCGGAGTAGAGTTATAGTTA 9205 30 100.0 34 .............................. GAGTAGTAGGCGATAACGGAAAGGCGTTTAAAAG 9141 30 100.0 35 .............................. TAAGACTACTGCTAGAAATGATGAGATTGTTAGAG 9076 30 96.7 37 .........................T.... AAAAATATTTTTGGATATTTAAAATAGGCTGGATAGC 9009 30 100.0 34 .............................. GTTTCATAGTCGCCGATTTTTGGCATTGAGCTAA 8945 30 100.0 36 .............................. TAGCCTTTAGCCTTGCTATTCTATTGTTCATCTTTG 8879 30 100.0 35 .............................. TTCTTCCTAGCTCTCCTGTGAGATAAACAAAAGCA 8814 30 100.0 35 .............................. TCTTAAGTACTTCAGCAAGGTCATCAAGTAGGCTT 8749 30 100.0 37 .............................. TTTTTCATCATTTTTATGATTTTTTTGTGATTGACTA 8682 30 100.0 35 .............................. TTTCATCTACCAGCACCAAACTATAAATAAGCAAA 8617 30 100.0 35 .............................. CCATCATTTCTATGGTCTTTTTTAAAAACGCAATT 8552 30 100.0 34 .............................. TATACGACTTTAACGTCATTGTTTAAATTTTTCA 8488 30 100.0 34 .............................. CCCTGAGCCAATTAACAAGCTTGATTTGCTCTTG 8424 30 96.7 36 ......................A....... TATTTTTGCAATAATAATCAAAAGCATACTGCCACA 8358 30 100.0 37 .............................. CAAAGCTCATTTGCTCTTGCTCTTCTTTTGGCACAAG 8291 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 28 30 99.8 35 GTATAAATTTATCCTTTTAGGATTTGAAAC # Left flank : TTTATAAATACTATATTAAGCCATTTTTTACTAAAATAAATATAGTAAAACTTGGTACAAAGTACTAAATTTAGCTGTTTTTGTTGC # Right flank : TTTTTGTGATTTGCATTTTTTATCGCTGTTGTAGCTGTTTTGATATTTTTATCCAAAACATCGCTTAGGGTAGTGGCTGTTTTGTTGATCTTATTAAAAGCACTATTAAACTCACTTAAATCAACTCCAAAGGTTAGAGTAGGATTTGCCATATTTAATCCTTTATGTTATACTTTTTAAAAAAGGCTTGTAAATGTTTAGTTTTATTATTATGGTTTTGGTTTTTGCTTTAATAAAATTTTATTGTCATTTTGATTTTAGCTACTCAAAGCCTTACACTGGTAAAACTGATACAAGATATAAAGATATCAAGCTTTAAGCCTCATTTATCCTTTTTGCTATCTCAAAATAATCTATAAATTCATTTAAATCCATAGATAAAATCTCATTAAACCCAAAATAGAAAATTCACATTTTTAGGATTTGTAGCTTACCTTTTTTATATTATAATAACCATATGGAAAGCATTTATAAAACTATACTTGAGCTAATAGCTCACA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATTTATCCTTTTAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //