Array 1 16043-6772 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQE01000040.1 Methanosarcina mazei strain 1.F.M.0.5 scaffold10_1_size131935-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 16042 37 100.0 36 ..................................... AGAGTACATTTTCTAACGTTCTCACCTTTGAGAATC 15969 37 100.0 37 ..................................... ACACTATAAAATCAGCCGGAACGAAAGCTAAAGTATC 15895 37 100.0 35 ..................................... CAAAGTCCCCCGTAGGATGTACGAATCTTGGAAAG 15823 37 100.0 35 ..................................... CTTCTCGATCGTCATTAAAGGGATCTTCGCAAATG 15751 37 100.0 35 ..................................... AGAAAGTAAAATGCTTATCCAGCCGTACCTGAATA 15679 37 100.0 34 ..................................... CAGCCGGATACACTGTTACAGGCTCCGTTTCCGA 15608 37 100.0 34 ..................................... TTACGCCCTGGGAGATTTCGTATTTATCAACTAC 15537 37 100.0 35 ..................................... TATACTGCATCCGAAACAATGTTAATAAGAATTGA 15465 37 100.0 35 ..................................... TTCCAAGATCCAAAACTAGACCCGGCTGATACCGG 15393 37 100.0 36 ..................................... TTTTATACCCTGGAAATGGGCTGATCTACTACGGGC 15320 37 100.0 34 ..................................... CACTGTTGGAAGAACTTGTCAAACAAGGAATTCT 15249 37 100.0 37 ..................................... TTAACACCGTACCGCTCAGCCCTGAAGTTCAGGTCAG 15175 37 100.0 35 ..................................... GTGATTGCTGTAACTGAGGGGAACCACACTGTTGC 15103 37 100.0 38 ..................................... CAAACTCTTCAGAGCCATCAGGATAGATTCTAAGCACT 15028 37 100.0 37 ..................................... CATATATGCATTCCTAACCCATGCCATAACAAAAACT 14954 37 100.0 35 ..................................... TGGCTTTTGCGCTCGTTGGAGGAACTACCCAACCT 14882 37 100.0 38 ..................................... TCCAGACCGGTTGAGACATAGGGGTGGCAGACGGAAAG 14807 37 100.0 41 ..................................... TTGAGTATGTTAAGGGCTGCTGTTCTTACGTTGTTGAACTG 14729 37 100.0 39 ..................................... TTTATCAGACTTGCGACCCGGCGACCTCCACAAAATCCA 14653 37 100.0 35 ..................................... AGAACTCGGAGCAGGCAAGAAGCAAAACATACCGA 14581 37 100.0 36 ..................................... TTTAGTACTGTTCTGCCTTCCGTTTGTGTTCATTTG 14508 37 100.0 35 ..................................... TCAATAAAATTATCTTGTCCTCTGTGACCTCTCCT 14436 37 100.0 36 ..................................... AAAATATCAGTATTGTTAGTACCCTTCCTATAGGGT 14363 37 100.0 38 ..................................... ATACAGGCTTGTTAGAATTACTCAGGTTTGACTTATTT 14288 37 100.0 35 ..................................... GCCGTGACTTCGATAAGCTTCTCATAAATTGCGGC 14216 37 100.0 35 ..................................... ATGCGATCCGCCAAAAGAGAAAGCTGTTCAGGAAT 14144 37 100.0 34 ..................................... GCGTCTGTTGTATTTTCATTTGCAAATGTGACGG 14073 37 100.0 35 ..................................... CGGTCCAATTTGGATCAGGAACCGAAACTCTAATC 14001 37 100.0 37 ..................................... ACCCGTTGTTAGTCTGATACTACATGGACATTTAGGC 13927 37 100.0 35 ..................................... ACAGATTAACATATTCAGATTCAAGAGCATCAACT 13855 37 100.0 37 ..................................... TGGACAGGGAGCGGGTTTTTTGCAGGGAGGTTGTAAT 13781 37 100.0 34 ..................................... TGTGCAGACGGGATAATCTGAAGACGCTCATCAT 13710 37 100.0 35 ..................................... TGTTAAAATTCCTTCTGAAGAATTGAACGGGGCTT 13638 37 100.0 36 ..................................... TTAAAGCGTTTGTGAAGGTGAGCTAATGATTGAAAC 13565 37 100.0 36 ..................................... ACACTCGCGAGCAGGGAATATCCATTCCCTAGATCC 13492 37 100.0 36 ..................................... GAATTTTCAGGACTCACTTTCGATGGAAATTACAAT 13419 37 100.0 36 ..................................... CCTAATAAGTTCCAAGCTTTATCAAGTCTGTTTCTG 13346 37 100.0 37 ..................................... CATCCTGTGAATTCAGGAAGCAGTCTTGAAGCAAGAA 13272 37 100.0 35 ..................................... CATGAGCTTCCAAGGCGCGGGATGGTCGAAACCTG 13200 37 100.0 35 ..................................... ACACTTACTTCAAGCAGTGCCGACACTTCCGCGAA 13128 37 100.0 33 ..................................... GCCCCGATCTCCTGAAGAAGAGGCTGGATATTT 13058 37 100.0 35 ..................................... CTTCGTGATACCGTTTCCCCATCAAAAAAGAATTA 12986 37 100.0 34 ..................................... TGCGATTCCACAGACTCAGTGAAACCCATGTCAA 12915 37 100.0 38 ..................................... ATTATACCCCCCATATATACACGCGTATTATCAGAATT 12840 37 100.0 36 ..................................... TCAAATCAGAGCATTATAAACAGTGAAAATAATAAT 12767 37 100.0 34 ..................................... AATACTTCTGCTGAAAAACATGTTATTTTTTGAG 12696 37 100.0 37 ..................................... TTGAGTCGATATCTTCCCAAAATGTCTTTCCATTGTT 12622 37 100.0 35 ..................................... CTCACCCAGTTCTTCAACTACTCCGGAACTTGACA 12550 37 100.0 37 ..................................... TCTATTATTTCCTCTTGCATCATTCCACCCCTAACAC 12476 37 100.0 35 ..................................... CTATTACAGAATCTCCTTTTGGCGGGCTGAAAGGT 12404 37 100.0 36 ..................................... TATAGCACGGGTATCGGCAACAACTAAACTCTGTAA 12331 37 100.0 35 ..................................... CTGCTTGTAAGATGAGTTCGTTTACCATTGTTTTA 12259 37 100.0 35 ..................................... AGAAACTCAAAATCTGCGTTTTCGGCTGTGATGCA 12187 37 100.0 36 ..................................... TCTCTGCTTCGTTCTTTTCATATGCTTTTTCTGCTT 12114 37 100.0 35 ..................................... ACGCATTGTGTTAGCATCACAGACTTAAAATTATC 12042 37 100.0 35 ..................................... CAGTTAATTTTTCATTATTGATTCAATGAACAGGA 11970 37 100.0 35 ..................................... ATGATACGTGGGTTCAGTGCATGGTAATCGGCAGG 11898 37 100.0 35 ..................................... GGAGTCTGGCATCTATCCACTTCTCAGATGTTCTC 11826 37 100.0 35 ..................................... CTCGGTAACAATATCAAAAACGCTATCAGTGATGT 11754 37 100.0 34 ..................................... CTTATATATGAATTCGGTTTTAACCTTCGTTTCC 11683 37 100.0 34 ..................................... CATTAGCTTTTCAATTAACTTCTCATTTGCCTTA 11612 37 100.0 34 ..................................... ATTCAAGAAGCTCTTTTTTCATGGTTTGGATTGA 11541 37 100.0 37 ..................................... ATAAACTAAACACAGAAACGATTCTAGTAGACGGAAT 11467 37 97.3 35 .....A............................... TACAGTGCTTCAATAGGTCCGGTCATTTTCTTATG 11395 37 97.3 34 .....A............................... TTCAAGCTCCGCGTTAACGGTTCCGCGTCCTACT 11324 37 97.3 36 .....A............................... AATGCAACTTATTATGGGGTATGGTGTGCTCCTGTC 11251 37 97.3 35 .....A............................... TCTGAGAGTTTCTCCGGCTTCCGGTACTCTTGTAT 11179 37 97.3 35 .....A............................... AACGGTGATAGAAACGGGCGAACTGGCATCCTCAA 11107 37 97.3 35 .....A............................... TCGGAATCGGCTTCATTGCCCGGATAAGAGTGAGT 11035 37 97.3 34 .....A............................... TTTATAATGTACCAGATCCATTCTGGCTGAATTA 10964 37 97.3 37 .....A............................... TTTTAGAAGAAAGGGAGCCACCCTTTCGTACAAAAGT 10890 37 97.3 35 .....A............................... CTATGTTGGCCTGCCCATCTACGACTTCGAGGCTC 10818 37 97.3 38 .....A............................... TATTCAATACCTAGATTAACTGTATGATCCCTGTGACT 10743 37 97.3 37 .....A............................... TCAAGACTGTCAAGCGCATTATTAGCCTCTTTGAATG 10669 37 97.3 33 .....A............................... AAAACCTTAAAGACTTAGTAGAAAAGTCAAAAA 10599 37 97.3 35 .....A............................... AAAAGCTTGCAGACTTCTCTGCTTCAGACTTAGTT 10527 37 97.3 35 .....A............................... AAATCTGCAATCGCTCAAGAATTCAAAGATAAGAG 10455 37 97.3 35 .....A............................... ACAATACAATTACTCATTCTCCAGTTTGATCCATA 10383 37 97.3 35 .....A............................... TTCGTGTTATCGCTTGACCAAGTCCATTAACCGCG 10311 37 97.3 34 .....A............................... TAATTCTTGCTTTTGTGATTCCCTTCTTCCTGAC 10240 37 97.3 36 .....A............................... ATTCGAGAGTCCGTAAAGCGTGGGAGACAAGGAGGT 10167 37 97.3 36 .....A............................... CACACTGCAATAACTCCTAAAATATGGAAAGCTACA 10094 37 97.3 35 .....A............................... CATGGTGATAGTCATGGTTAACAAAGTGTTTAAAT 10022 37 97.3 35 .....A............................... CTAGCGACAGGATCTGCTGTAAATGCATCATAAGA 9950 37 97.3 34 .....A............................... AGATAAATCGCCCATGTCTACAAAAGAAAGAAGA 9879 37 97.3 35 .....A............................... TGTCTCTAGCGGCACTCTGCTCACCAGCTCGATTC 9807 37 97.3 32 .....A............................... TCGGCACTGTTATATTAAGGAGTCCGAGAGGA 9738 37 97.3 34 .....A............................... TTTGTTATCACTGATTTGCGTCTCGGTGTTAATG 9667 37 97.3 35 .....A............................... CGGAAAGAGACTTAACGCTTTTCCAGACCTGAAGG 9595 37 97.3 37 .....A............................... CTCATCAAATCTGTTGGAGCTTGTGCCCGCTTCGCTC 9521 37 97.3 36 .....A............................... CACTGTTGCAGAAGGCGGAGCAAGCGACATTGTAGC 9448 37 97.3 34 .....A............................... TACGTTGTAGTGTTTGCAACCTCATTACCATCAA 9377 37 97.3 36 .....A............................... ATACTAATACGCTTTTTAGATATAAAAAGGTATCTA 9304 37 97.3 32 .....A............................... CGTTTCCTTCTTTGAGGATGCAGGTCATTTTT 9235 37 97.3 35 .....A............................... AAATCTTTTTTATCGCTTATCTGTTTCCAGTGATA 9163 37 97.3 34 .....A............................... TAGTTACATTCCATCAACAAAAAGAGCCTTACAG 9092 37 97.3 34 .....A............................... CTGTCTAGGCTGCCCGTATCTATTTCGATTCCGG 9021 37 97.3 34 .....C............................... TTAGTAGATACTTAGCTAAGTAAATGTATAAATA 8950 37 100.0 35 ..................................... CTTATGTTCTGTGCTCTTAAAATAGTGCGCGAAAA 8878 37 100.0 37 ..................................... CCCATTTCCCGCCGTACTTTTCAAAACCACAGTCAAC 8804 37 100.0 33 ..................................... AAAAATGACTGAAAGAGCACCAAATAGACCAGG 8734 37 100.0 35 ..................................... CCATGTTAAATCCTCACGTTGATATCAGATATTGA 8662 37 97.3 34 .....A............................... AGTTTTCCCTCAAACATCTGATTACCTAGGGCAG 8591 37 97.3 36 .....A............................... TTTGAGAGTGTGCAATATTTGAATTGTTCTTTTTTT 8518 37 97.3 35 .....A............................... AAAATACAAGTAAAGTAAGCCACACAATCCCTCTC 8446 37 97.3 35 .....A............................... AAAAATCCCTCAAAAAAGCCTTTTCTCAAATTGAA 8374 37 97.3 34 .....A............................... CCAACGTATCAAGAAATTGAAGTGACTACTCCCA 8303 37 97.3 36 .....A............................... TTGATTCTTCCAACGGGTCTACAAATACCGCGTCCC 8230 37 97.3 35 .....A............................... ATGGGCTGTCTAAAGGGGCTAATGGGGCTAATTTC 8158 37 97.3 36 .....A............................... CGTCCCATCCGGCAAGAGCGAGGTAATACATGGCTT 8085 37 97.3 34 .....A............................... TTTTTCAAAAGAGGACATTAAAAAGAATAACAAG 8014 37 97.3 36 .....A............................... TTGGAAACTCGCAAATCCTGTAAAAATTGAAAACCC 7941 37 97.3 34 .....A............................... TTACAATGATCCTGGATACGGGTCAAAGTCGGTA 7870 37 97.3 37 .....A............................... TTTTGCTAGCTTCTAGCATTCTCACACTTAATAGCTG 7796 37 97.3 35 .....A............................... CAGTTGCGGTATGTTCTTTGACACCTACAATAATT 7724 37 97.3 34 .....A............................... AATAATAATACAACAAGTCATCCAAGTGACGGGT 7653 37 97.3 43 .....A............................... TAACCCTCACAAACAGGGGTAATCTACTGTTAGAGTGCCTGAC 7573 37 97.3 32 .....A............................... TTATCAGCGTGGATATAATACTTATATTTCTT 7504 37 97.3 37 .....A............................... ATTTTGTTCGGGGATTTTAGATTTTTGACTTTCGACA 7430 37 97.3 36 .....A............................... TGGTTGCCTGTCCTTGCCCGTCAAGAACGGTATTGG 7357 37 97.3 38 .....A............................... CGTGGATGAATTAAGTTTGAGTCAGCGATATACAAATA 7282 37 97.3 38 .....A............................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 7207 37 97.3 34 .....A............................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 7136 37 91.9 0 .....A.............................GT - Deletion [7100] 7098 34 78.4 36 ---..A..AGT..C....................... CTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 7028 37 81.1 35 TG...A..AGT..C....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT T [7013] 6955 37 83.8 34 .G...A..AGT..C....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT T [6940] 6883 37 81.1 36 GG...A..AGT..C....................... TTTATTCTTCCTTTCCTTTTCCTACTTGCGCTTTCC T [6868] 6809 37 78.4 0 TG...A..AGT..C......................G | T [6793] ========== ====== ====== ====== ===================================== =========================================== ================== 129 37 98.0 35 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : TTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTACGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAGAACCAGACTCTAGCCAAAATACAACTGAAACTGTACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACTGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAGAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTGT # Questionable array : NO Score: 8.89 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [42-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 2464-2792 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQE01000148.1 Methanosarcina mazei strain 1.F.M.0.5 scaffold115_1_size7362-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2464 37 59.5 36 TGGTCTCC.TCTTTA.A.................... TTAAGATGACCAGCGATCACAGTTTTCGTCTCTGCC 2537 37 78.4 35 .G..G...GT.GCT.....G................. CTATTTCCCTATACCTTTCTCACTCAAAACCATTA G [2546] 2610 37 100.0 35 ..................................... TCAGAAAGTTCCTGCATCGAGTCTACCCATGCATT 2682 37 86.5 37 ....GC..G...................A.......T GCAGACGAAAAACGCAAATAAGAGTACAGACAAATTC 2756 37 81.1 0 ....G.T.A.........T........A.....T..T | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 81.1 36 ATTCAAGATCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : ATAGGTCAAACAATTAGAGCAATAAGATATCATTTAGGTGAGTTAGAAGCATGTTGGTTACTGTGTACAAGAGAAACAAAAGAGAGTGAAGAGCTAATAAATTACTTTATAAGAAAATTCTCTAAGAAAACGGTAGACATCCAATCAATCGAATTAATAAATTCTTCAAAAATTGGTGATACTTTTAAACAAATAAATGAGATATATATAGAAAAAATAAAAGGAGTTGGTTTAAAAGAAGGAGAGGTCATAGCAGATTTGACAGGAGGAACCGCGGTTACGAGCTGTGCGATGGTTCTTGCCTGTGTACCTATAAAAAGAGACATGGAATATGTTCTTCAAAGTACATATGATCTAATAAAAATAAAAGAAAATATCTCTGAAATAGTATTTGATAGATAATTGTTAAACAGTTAAGTTCGAAGTTGCTTAGAATTGGCTAAAAATAAGAAAGATAACTCTTTAAGAAATAGTTGCCACGAAATAAATAGTGAGATGCT # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAGAAAGCAGCCGATGCGAATCTAACTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCAAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATGTGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTGCAATCAATGAATGTTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.05, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAGATCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.18%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5157-12845 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQE01000092.1 Methanosarcina mazei strain 1.F.M.0.5 scaffold84_1_size12949-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5157 37 94.6 36 .....T............T.................. TACTCTGTAAAAATCCCCCCTTTTGGAGCGAAAGCC 5230 37 94.6 36 .....T............T.................. TAATCTATCGAAAATGAGGTTTTCCATGAATCTGGT 5303 37 94.6 36 .....T............T.................. ATAAAGGTAACAATTGGGGGATTTACTTAGAGCTGT 5376 37 94.6 36 .....T............T.................. AATTGTTTCTCAGCGCATTCCCGCGCTTTTCTGATA 5449 37 94.6 35 .....T............T.................. TTCATTGTTAATTCTCCCGCGCAGGATCATATCAG 5521 37 94.6 35 .....T............T.................. TCCCCCCATAAGAATTTCTTAGTTTCAGGAAATTC 5593 37 94.6 38 .....T............T.................. TGACCGAGTAGTGTACGAGTATTTGTAAAAAAAATATG 5668 37 94.6 36 .....T............T.................. CCAAGCCTGATTATGAGGTAAACTGGCATCACCGGC 5741 37 94.6 39 .....T............T.................. ATAGATGCGGATCGAAGTCTTCTACTTTTATTACTTTCG 5817 37 94.6 35 .....T............T.................. TTTGCAGGCTGATAATAGTGGCGGTGCAAGTATGC 5889 37 94.6 38 .....T............T.................. ATCAGAAAACGCTTTTATTACGCGGGTTTTCAGATCGT 5964 37 94.6 37 .....T............T.................. CTCGGCTTTCACTCGGGCGCAAAAATACCCCTATATG 6038 37 94.6 35 .....T............T.................. CCGGGAATGTGACGGTCAGGGAATACGGCATTTTC 6110 37 94.6 38 .....T............T.................. ATGACGATCGAGAAGTAATGCTTACTATTCCTGAACAG 6185 37 94.6 35 .....T............T.................. TTGAGAAAAGTGAGTTGATTAAGGTATTATCAAAT 6257 37 94.6 36 .....T............T.................. TGCCGTCCTTTTTCGGGACAATATGAACAACGTGGT 6330 37 94.6 37 .....T............T.................. ACACACGAAAATGTTGTGCCGATTGATAATCCCTGCT 6404 37 94.6 33 .....T............T.................. AGATCGCTGCCTGTTCAAAATCATCGAGATCAT 6474 37 94.6 35 .....T............T.................. CTTATTAAATTGAGGAGAATTACCACTACTGTACC 6546 37 94.6 37 .....T............T.................. ATGTGCATGTTCGGGCTTGCTTTTCATGCTAATATAC 6620 37 94.6 37 .....T............T.................. ATAAGGTATGCAGCAAAGTCGTATTCTGTTTTTGAGA 6694 37 94.6 38 .....T............T.................. TTCCACGACCTGCCGGAGGGTATCGGAACCCGGTTTGA 6769 37 94.6 37 .....T............T.................. GGAATTTTCAAAAGCTCATCTATATTCGTGAATCCCG 6843 37 94.6 34 .....T............T.................. GCAAGTGTAAAAAGGGAGTGGCTAATCAGTTTCG 6914 37 94.6 36 .....T............T.................. TACCACCAGTTTCAACATTTTGGTTCGAACCGCAAA 6987 37 94.6 35 .....T............T.................. CTATACGGATATCATCAAATGACGCAGGAGAAATA 7059 37 94.6 36 .....T............T.................. CCCGGAAGGCTCCCTGCATGACCACAGGGACGATGA 7132 37 94.6 34 .....T............T.................. CATCCACGAAAGAAGCTTCAGAAGGTACGTATCA 7203 37 94.6 36 .....T............T.................. CTGTCGATATATACGGGAAAAAAACGGCTACCACTA 7276 37 94.6 35 .....T............T.................. AGCTTATATTCCTCGTATTCACATCCCCATTTCTC 7348 37 94.6 36 .....T............T.................. CATGAGGGAAGCGGACGAGGTTAAATATCTGAATGG 7421 37 97.3 34 .....T............................... TTAAAGCTGACCATGCATTATCAAGTTCTGTTTG 7492 37 97.3 38 .....T............................... GAAAATTGTTTTCATACTTCCTAACTGATTCTTAATCT 7567 37 97.3 36 .....T............................... CTAGTATAAAAAAGTTTTGAGTAGAGAAGACTTAAT 7640 37 97.3 37 .....T............................... ATTTCTCCACCCTGTAACGTTGTTGCACCTGCAAATT 7714 37 97.3 37 .....T............................... ATGTCTTAAATCGCCTTAGATTTGTTCGTACTTATTA 7788 37 97.3 34 .....T............................... TTAAAGCTGACCATGCATTATCAAGTTCTGTTTG 7859 37 97.3 38 .....T............................... GAAAATTGTTTTCATACTTCCTAACTGATTCTTAATCT 7934 37 97.3 35 .....T............................... ACCTCATTGCAGATAAATGATTTAGCCCTGTAGAG 8006 37 97.3 37 .....T............................... GGGTATGAAATTGACCAGGAAATCCACAATGTTGTTG 8080 37 97.3 38 .....T............................... TTTATAGAATTACATACATAAGTGAGTGTAGCGAACGT 8155 37 97.3 35 .....T............................... TAACAGTCCTCTATCTGGTTGTTTTCAAAAATCGT 8227 37 97.3 36 .....T............................... TAAAAAATACACTCGAATGCATCAAATTATACTGAG 8300 37 97.3 36 .....T............................... TGGTGGAAAGGAAGTTGCAAAAAAACTTGGAATTGG 8373 37 97.3 36 .....T............................... GCTACGATTTCACTATACAATTCCTCTACAGTCTGC 8446 37 97.3 33 .....T............................... TTATGATGAGTGTGAGACAAAAACGGATACTGC 8516 37 100.0 35 ..................................... ATTTATTACTTCCCATTCCTCAGAAAACAGTTCAA 8588 37 100.0 38 ..................................... TAAACCAGTCCCGCGATTACAAGCATCGAAATGATACA 8663 37 100.0 36 ..................................... CGAAGTTAAATGATGGTGGGTTGAAGTTTGACGGTG 8736 37 100.0 37 ..................................... TCCATATGCCCCATCTGTGCGCATATAATCGCATATT 8810 37 100.0 34 ..................................... CTACACTCTGTGCGTTTGCGCTTGTTAAATTCGC 8881 37 100.0 37 ..................................... AGATACGCTGCCCAAGAAGCCCCACCTGCCCCTGCAG 8955 37 100.0 37 ..................................... AAATCTATACTAACCCAGCCACACTTTAGCCCTGCAG 9029 37 100.0 37 ..................................... TAAGCTACTATTTTACCTTGTCTGACTAAATCTGCAT 9103 37 100.0 35 ..................................... TTCAATGATCTCTACTTTTGCCGGGAAAGATTCGT 9175 37 100.0 36 ..................................... AAAAGCGACTTGCATATACTACAGAGCCGGTTCCGG 9248 37 100.0 36 ..................................... TAATTTCATCATGCCCACAGGTTGCAATGGTGTCAA 9321 37 100.0 35 ..................................... TGGCCTCGATCTCTGCTGTAGACCCCTTTTCCTCT 9393 37 100.0 38 ..................................... TAACCGGCATACAGAGCCATTATTAATTGTACCAAAAA 9468 37 100.0 33 ..................................... CAGGGGCGAATTCGTCTTTTACCGTCGGGACAA 9538 37 100.0 36 ..................................... TGCAAGTAAATTACGGTGGAAGTGTTGCAGTTTCTA 9611 37 100.0 34 ..................................... TGACTGAGAGACAGAGGAACGAAATTAGAAAAAG 9682 37 100.0 35 ..................................... GGATTTATCAAGGCGTTAACAGATACAATATCCAT 9754 37 100.0 37 ..................................... TTAATTTCGCGTATATCGTCTATAAAACTTTTCACAT 9828 37 100.0 37 ..................................... AAGGTTTATCTTTTTCCTCAATGTTTCAAAATGTTTT 9902 37 100.0 37 ..................................... TCCTTGGCTACTTCAAATTCAGTTTGTAGTTTATTAA 9976 37 100.0 37 ..................................... AAAACGTTATCCCACTTTTCTTTGGTGATTCCATAGG 10050 37 100.0 38 ..................................... TCAATCACACATTCTTTAAAGTCTTCTATCGTAACTTT 10125 37 100.0 36 ..................................... TAAAGTTAGATGTACGTGGCGCATAAGATACACTTC 10198 37 100.0 36 ..................................... GTTTTATAGTTGTTACTACTATAATAATCACCTCTA 10271 37 100.0 38 ..................................... TTCATTCCTCGAAGCTACAAACACAACAAATCTAAATT 10346 37 100.0 36 ..................................... CCTCGCTCTTGCCGGATGGGACGTAAATGAAATCAT 10419 37 100.0 37 ..................................... AAAACTCCTGCTTCAATCTGTTCGGGGGTTGCTACGT 10493 37 100.0 38 ..................................... CCTCGTTTCTTTTTTTTGAAAATCCCAGATTATGACGT 10568 37 100.0 34 ..................................... TTCTCAGGGAGCGCGGAGGCACAGCGAGAAGACC 10639 37 100.0 34 ..................................... TTAAGAAGTCTGAACCTGTGGAGCAGTTGAAAAA 10710 37 100.0 33 ..................................... AAATTGGCGATTTCTTTAGAGTTAAAGGTAAGA 10780 37 100.0 37 ..................................... ACATAGTCATACATGCTGTCATAGAGGTTCACGTATC 10854 37 100.0 34 ..................................... TAGCTATCTTAGCTATCTTTTCGGCTCGTTGGAA 10925 37 100.0 36 ..................................... CATTCAACGATATTTACAAGCCTAGTGTAATCCCCT 10998 37 100.0 35 ..................................... AACCTTCTACAAGATAATCCAGCCACATTTTTTTA 11070 37 100.0 34 ..................................... CCACCTTGTAGGTAATAATCTTTCCGATTACTAC 11141 37 100.0 35 ..................................... TTCCAAGAGCCGTGTAACTGCATGTTGCGGCTTTC 11213 37 100.0 33 ..................................... TCCCTCCTTAAGTTGTCACCGTTCCGAGTCCAA 11283 37 100.0 36 ..................................... TTAAAAAAATGTTCTTTCTTGCAAATCCGGTTAACT 11356 37 100.0 37 ..................................... GTTCTCCTGATTCGTTATCTATGCGATGTAATACACA 11430 37 100.0 37 ..................................... TTATGGTGATCCAGAGAAGGATATTCCGGCGAAAGAG 11504 37 100.0 36 ..................................... TATTCATGCTTCAACTTCCTGCGTTCCCTTGCTCCA 11577 37 100.0 36 ..................................... ACCCTGGGTCTTCTGAATGGTACTGGACAGGTTCAG 11650 37 100.0 36 ..................................... GCATCATCGTTTCCGGACCCGAGAGATATGATATCC 11723 37 100.0 36 ..................................... TTCACCATATTTGATAAAAATACGTTAGTATGTTAA 11796 37 100.0 37 ..................................... ATGCCAGTGTTGCAGCTTCCGTGCGGGTTTGTGTTGA 11870 37 100.0 36 ..................................... AAACACAATTGAAGTTATTCCTATCGCTATATTCTA 11943 37 100.0 37 ..................................... CAGGAAAAGGTATCCGAAATACAGGTATTACAGGTAG 12017 37 100.0 33 ..................................... CATAACAAATTCGATATTCATCTCTCGATACTT 12087 37 100.0 34 ..................................... TGATAGGCATATAATTGATGTTTTGATAGAAAAG 12158 37 100.0 34 ..................................... TATAGAATTGTAATTGCAACAGACGATGAAACAC 12229 37 100.0 37 ..................................... TCCGTTATTGCCTCGTTTTTACCAATTATCCCTTTTA 12303 37 100.0 36 ..................................... AGATCGTACTGTAACTGCTTTACCAAATCGTCAAGG 12376 37 100.0 34 ..................................... AATTACCTATATTTCCACTCCAAAATCTGGTCTA 12447 37 97.3 35 .....T............................... AAGTGGATACATGCCCCACATGACCCCATTGAACC 12519 37 97.3 34 .....T............................... TTTCGACTTCCCATCTCCTGCTCCTGATGTCAAA 12590 37 97.3 36 .....T............................... CGGGACTCTGAGGTGATCAAGAATGACAAATGCACT 12663 37 97.3 36 .....T............................... TTATTTTATGTTTTAAATTCCAGATAACAATTCTGA 12736 37 81.1 34 GG...A...T.GCT....................... TTGAATCGTTCGTTCGGTTTTCTGTGATTTAAAA A [12741] 12808 37 81.1 0 .G...A...T.GCT......................G | A [12815] ========== ====== ====== ====== ===================================== ======================================= ================== 106 37 97.6 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GGAGAGGAATTGCAGGGATGAGGGATAAACTGATCCACAACTATTTCGGTGTGGATTCCAGTGCTGTATGGGATACCGTAAAAGAGGATATTCCTTCTCTCAAAGAAGAAATCATTAAAATTATTCAGGACCTTAATGAGAACGTTTAGTTTTTTTAATTTTGTCAACCGATCTATTATTATGAGTACAAGAAAAACATTCGTGAAGTTCCGGAATATTGCCCCTCTTTCTGATCCTGCCCAGGGGCGGAAAATCCCTCCTCGCTCCCAATATAAAACCATATTTCACGGTAGATCTGAAAAAGAGTATGTACAAATATACAAATCAAAAACAAAAGTTTAATAAAAAGAAAATCATATGTCCATATGTTTCTAAATTACTAAAAACCCTGTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTCCCAGCAAGAATTTTAGCCTCGAAAAAGGGCACATTTCCGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : TTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAA # Questionable array : NO Score: 8.87 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 16271-11932 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQE01000018.1 Methanosarcina mazei strain 1.F.M.0.5 scaffold16_1_size52706-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================ ================== 16270 30 100.0 37 .............................. ATGATTGGCTTGGGGTTGGTGGCTTTGTCGAACTCGG 16203 30 100.0 35 .............................. TCAAACTGAGGGTGAGCTTCAGCACGCCTCATAAA 16138 30 100.0 38 .............................. CTTGCAAAAGAAATAAACAGAATGATTGGCGTAGAATG 16070 30 100.0 39 .............................. AAGATAATGATTACAGGTGTGTACGATACGCAAAAGAGA 16001 30 100.0 35 .............................. AGTTCAACGATCTCTCCACATGAAGGACATTTATG 15936 30 100.0 36 .............................. TCGTATGACTGCCTTGAATACCGTTCAACGTCATCC 15870 30 100.0 37 .............................. AATTTCAGTCGGATTTGTTTTAGTATTTTTTCACATG 15803 30 100.0 35 .............................. TTGTTATTTTTTTAAGGGGGTCTTTCAACTTCATT 15738 30 100.0 35 .............................. TTTTTGTTGCACAGAATGAACAATATCCCTGGATG 15673 30 100.0 38 .............................. ATCGCCGCCAGGGTTTGCCCAGGAAGTATTTTTCTCTC 15605 30 100.0 38 .............................. AAATCTTCAAATTCCTCCCTCAAGCGGACGTACCGAAA 15537 30 100.0 36 .............................. ATAGAGTGAGAGGGTTGCCTTTTCGATTTTCGCGCC 15471 30 100.0 36 .............................. TCATTGAGAAAGTGGTTAAATCTGCCGGAACATCCG 15405 30 100.0 38 .............................. AATTGCCGAAATAGTGGAGGTAATCATTTCTTTGTTAT 15337 30 100.0 32 .............................. ATTGGAAAAATTAAACAGGAAATAGCAGAACG 15275 30 100.0 36 .............................. CTTAATAAGCCCCCTGCCTGCGTCCCCTCGTCCTTA 15209 30 100.0 35 .............................. ATTGAATACAACAACTGGATAAGTGCGGCTTACTC 15144 30 100.0 36 .............................. GTTTATCGCCTTTGATGAACTTACTCAATTTTCGGA 15078 30 100.0 36 .............................. GTTTTCTGGTATTCGGGGGTTTTCGGGTCAGTCTGG 15012 30 100.0 38 .............................. GAGAATACCGGATAGAAGATAATTCAATAACCGAGAAA 14944 30 100.0 37 .............................. TCTATCACGTAATAAGTTCCCGACTGCGTTTCTGAAA 14877 30 100.0 35 .............................. CTGACCTGGTCAGGGGATAGAACAACAAAAGCCTC 14812 30 100.0 35 .............................. CTTTGATACTGCTGCGCCCCTGACAAGCGTGTAAT 14747 30 100.0 38 .............................. TTGGATTAATAGGAGAAGGCGCACCAATCCAAGTACAA 14679 30 100.0 36 .............................. TCCATAATACCAAAAAGTACATTATTTGACATTGAA 14613 30 100.0 39 .............................. ACAAAAGCATATAAAGCAGCTCATTTTGCTGCTTTTAAT 14544 30 100.0 46 .............................. ACATAATTGTAATGCTAGAATCTGTGACAAAGATTGTATACGGCTT 14468 30 100.0 40 .............................. TAAGTTTTTTATAATACTCAAGTGCGTAATCACAAATACA 14398 30 100.0 34 .............................. ATATACTAGACCCCTATATGCATACCAAACGCGG 14334 30 100.0 36 .............................. TTATATTGTGATTTACCAGATACCCAAGGGGACCGT 14268 30 100.0 36 .............................. CATTTAAAACTCATTGTTTTGGCTCCTTTGAACTTT 14202 30 100.0 36 .............................. TTTAATTGGTACGCTAAACAGGCGGACGTTGGAAAC 14136 30 100.0 36 .............................. GGTCCTCCGCGTTGAATCTTTGCGGGAATAGAGGTT 14070 30 100.0 36 .............................. AACAGCACCCCGTACCCTCTGCAATTATCGAATACG 14004 30 100.0 36 .............................. CTTGCAGGTACTAGAGCGGGGTTGATCGGGGTGAAG 13938 30 100.0 35 .............................. TAGTTATTCCACGCGCGGGCATCTGAGCCGCCGTC 13873 30 100.0 37 .............................. GTAGCTGATTCCTTCGAGATTACTGCCGATTTTGAAA 13806 30 100.0 38 .............................. TTTCTTCGGGTCATACTGCTTCATTGGTTCGGTCTGAC 13738 30 100.0 34 .............................. TGATCACATCATCTTCATTGAAAAATCCTTCATA 13674 30 100.0 36 .............................. GTTGTTCGCTTCGGGAGCAGTTGCAGCCGTCCAGCT 13608 30 100.0 37 .............................. TCAGGATATATAAGTATTATTTTTCCGTCCTCATTAC 13541 30 100.0 36 .............................. GTGATAGATTTCTATCTGTTTCGATTCTTGGATACT 13475 30 100.0 37 .............................. ACTATCCAGATCCCAGGACCCCAGGTTGAGACAATGT 13408 30 100.0 35 .............................. GTTCCGGCTGAAGCAATGCCCACCGAAAAAAGGAA 13343 30 100.0 35 .............................. TCTTCTTCTTCAGGGTCTTCGGCTGAAATGAGAGG 13278 30 100.0 36 .............................. TTGTCATGCTATAACCTCCTGAGCATAAGCTCCCTT 13212 30 100.0 39 .............................. GTCCGAGTGGATTGATCTGGGCCTCGTAGTTATCCAATC 13143 30 100.0 38 .............................. TGTGCTTTCTGTTGGAATTTCGGTGACATTTTCAGGGA 13075 30 100.0 35 .............................. TAGAACAAATGGCAGCCCCCGCAACACTTAACCCG 13010 30 100.0 36 .............................. CTAAGAAAAGAATACTCCGTCAGTGTTTTGAAAAGG 12944 30 100.0 36 .............................. ATCGGTGATTTCTTCTATAGCCTGAGAGTAGAGTTT 12878 30 100.0 38 .............................. TCCTTTGCGACAAAAGGTTTAGTCAGACTTATTTCAAA 12810 30 100.0 36 .............................. GAGAAAATGTTTCCTCGAGCCTCAACCGCGTATTTG 12744 30 100.0 35 .............................. CTAATATCTCAATTCGTGGTTGCCATATCCATGAC 12679 30 100.0 36 .............................. GGATCTTTCTCCGTGAGTGCCGGGTTGTCCTCCAGG 12613 30 100.0 34 .............................. TGACCTGAATTCTCCCTGAATTAACTTTAATATC 12549 30 100.0 36 .............................. CTTTAAATCCGGTAAAGGCCCGATGTGGCAGGCCGG 12483 30 100.0 37 .............................. TCCTTTGTACCTATGATAACGGATTAAACCGCCACAT 12416 30 100.0 37 .............................. AAATTCAGAAGCCAGGGTTACTGTTGGAGTCAAGAAA 12349 30 100.0 36 .............................. CTAAAAACTCCTCTTCTGACATCACCTCTCTTATTT 12283 30 100.0 35 .............................. ACTGATCCTTCCAATTTTGATGAGGTAAAATTAGT 12218 30 100.0 34 .............................. ATTGAACTATTACGGCATTTTGAAGGACAGGAGG 12154 30 100.0 36 .............................. AGGAATACACCGGATAAACTGCCTGCAATGAATACA 12088 30 100.0 96 .............................. GTGCTTAGGAAAACCCTTGTATATAAACATCTTTAAATTTGTGGGAGAAAAATTAATAAAAGGAAATTAAAAAGTTATATACTATTAGAAAAATGT 11962 30 80.0 0 AA..G.....CT.................A | T [11956] ========== ====== ====== ====== ============================== ================================================================================================ ================== 65 30 99.7 37 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Left flank : TATGAACTGGGTCCAAAATAGTGTTTTTGAAGGCGAACTCACAAGAGCCGAATTCGCAAAAGTTAAATCAAGGCTTAAAGAACTCATTGAAGAAAAATCTGATCACATCATTTTCTACAGCTCAAGAGATCGGAAATATCTTGGAATAGAAAATCTCGGAACCCCAAAAGCAGATACAAGCAATATCATTTAATTGCCTCGTCCATGAGTTTCATTACTTAGATCTTCATACTAGAATTAACACTTAATTTATATATTTCTCCCGTCTGCCTTTTTTGCAGTTCCTGTTTCTCCTCTTTTTTCGTGGATCTTTATATATGAACCTCCTGAAGCACGATCCCCGAAATCAGCTCTTAAAACCCTCTTAAAAAAAGAATGCTTTTATATCAACAGTGAACAAATACCATTGAATAAAAACAGTATCATTCCCCCGAATTATTTATCACCCATCTGACAGGATCAGGCATCCAATTTGCCTAAATTCGGGGAAAATTTCCTTG # Right flank : TTTGGAGTTCGTAATTTCAATTTATTAATAAGACCTTTTAGGGATCATTTATTTTTTTTACATTTTATTTGGGAAATAATGACTTACCGTTTGGAGTTCGCAATTAGGAAAGATTTATCTATTTGAAATGCTTTATACTCTATAACTCATTAAGAAAAACGGGAAATGTAAATACAAAATTTAAATAATAGTCAGGGAACAAGTTATGGATCAAACAAATCCCGTTGAATTGACATTATTGTTTTTGAGAATACTGGAATTTCTGCAACAAAAAGCCTATATCCGAAAGACGGACAAAAAAACAATCCTTGGTAATGGAAAGAAAGTTATCTGGAGGTTAAATATTGATATATCAGTATACAGGGAACCCGTTCGTCGATAATGGTATGTGGGCAATTTGCGAATGGGCAGAAAAGAAAGACCCAAAGGAACTTGGAATTGAGGACATAAAGGAAAGTATTTCCGATATTATTCCAATTTATTTAACAGAATCTTGGGGA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //