Array 1 317157-318964 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSAQ01000002.1 Salinivibrio sp. VYel8 NODE_2_length_588456_cov_190.750776, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================== ================== 317157 28 100.0 32 ............................ AATACGCCAGAGGCCAGCGCCGCCGCCGTCAA 317217 28 100.0 32 ............................ TCAAGCGAGTTGATAAAAATCCTATACTACCT 317277 28 100.0 32 ............................ GCTGCCACCTGTGGCGATTGACGAGATGGCCA 317337 28 100.0 32 ............................ GCGAGGGTGAGCCATTTAAGGAAACCTATCAG 317397 28 100.0 32 ............................ GCTAACGGTAACGCAATCGAGGTCGCCAACTT 317457 28 100.0 32 ............................ CAACCGTGTTCGTTACGTGCTTTTTGTTTATC 317517 28 100.0 32 ............................ GGATTTGCGGATAAGATGACGCAATTCTCGGA 317577 28 100.0 32 ............................ ATATCGCTATGGAAAGACCGCTCAAGGATGTA 317637 28 100.0 32 ............................ AAAGCGCAAGCGAAACGCTTGCAGGAAGTCGC 317697 28 96.4 32 ....T....................... TAGATAAGAGATAAAGGTCCGTGCGTACGATG 317757 28 85.7 146 .....................G...GTG ACACAAGCCCCAACACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGTCCGCTTGGATAATAGATGGCTGACATTGCACTGGCGCTTGTCCGACCTT 317931 27 89.3 32 ....T..-A................... AATTCGGCTGGCCGTCGATGTTAGCCATGATG A [317933] 317991 28 100.0 32 ............................ AGAAGATAACCGCACACCAGAGCCAGCACAAA 318051 28 92.9 32 ...........T.T.............. TGCCAGCGTTTTTTGTGTGCGCTTGTATTCCG 318111 28 92.9 32 ...........T.T.............. TTGCGAGGGGCCAGCACTTCGTCACGGATTTG 318171 28 92.9 32 ...........T.T.............. GCTCGGGCGGGTTTTTTATTGCTTGCGGTGTT 318231 28 92.9 32 ...........T.T.............. ATCAAAAAATCAAGCAGATTCAAGACGCCGGT 318291 28 96.4 32 .............T.............. CGCAACTAGCCGAGGGCGAAACGCCAGCGGCT 318351 28 92.9 32 ....T........T.............. TGAGTCAAATTGCTTCATTCCTCGGATTGTTT 318411 28 96.4 32 ...........T................ GTCAGCAACACGCCTCACCGCGTTTTAGTTGT 318471 28 100.0 32 ............................ GACGCACGGGCGCATGAAATACCAATCTATTC 318531 28 100.0 32 ............................ AATCCAAATCATCGGGGTCTAGGTCGAACAGG 318591 28 100.0 32 ............................ TTTTCCACATAGTAGAAATCAAATCTCAAGCC 318651 28 100.0 32 ............................ TAAAGCCAACGGTTAAAACCGACCTGAATGCT 318711 28 100.0 33 ............................ AGTTGAAACCGCGGTATCGAGCGCGATCACGCC 318772 28 82.1 136 .............T.......G...GTG ACACAAGCCCCAGCACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGATTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGGCCGCTTGGGTAATAGATGGCTGACATTGCAATGGCGCTT 318936 28 67.9 0 ..C...CTA.......A....G...GTG | G [318940] ========== ====== ====== ====== ============================ ================================================================================================================================================== ================== 27 28 95.5 40 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTTATCGTCAACATGGTCACTTTTTGGCGGCTTTAAGCTTGTATTGTGTCTTACAATGGCTACGCATCACGCTCTTTGAACGCAGGGCCGTGTGCTTGGTTTTGCGACCACGTGTACGCGCACGCCATACTTTGAAACTACGCGGTTTTAATTCACGTCGCATTAAAGCAATCACATCATCTTGGCGTAGCCCATAGAGTGCTTCAATCGCCTCAAACGGGGTCCTATCTTCCCACGCCATTTCAATGATCCGGTCTACGTCACCAGGCTCAGTCAGTCGCATAGTCTCCTCCTCGCATTGGACTAATAATTACGTATACGTTGAGCAACGCGGATCATTGAAGTTGGATACATAAAACCCCTTTGTAACCCTTCTTTTGGGGAGGTTTAAAAATAATCATTAAATACAAAGAGTTGTGGAAGGCCATTTTAAACAAGGGTAAAAGAGCATTTTTATCCTAACAGCCTGTTGTTCCGAGCTATTATTACGTTATTCTATT # Right flank : GACACAAGCCCCAGCACTATGTTGGATAGGTGACATTGCTAACGGGCGCCTGGCTCGATTGGCGCTTATATCAAACGATGTAAATGCACCATGCTAGTCTTGATGTTGTGACTTATTAAACAATGAATATGTTGTAATTCCTTAAATGACAACTAATATGTTGTATATAGGCTGTAGTACAACATTAAAGTTGTTTGAGGGTGTGATGGTGTCACTAAAAGATATCGCGCGTGCATTGCAAGCGCGTCGCAAGTCACTTGGACTAGAGCAGTCTGACATGTACATGCGTATTGGCATGAAACAACAGCAGTACCAGCGAGTAGAGGCGGGGAGTGATGTCCGGCTATCGACTTTGCTGCGTGTGCTCGAAGGGCTCGACCTGACATTAACGCTTACGCCCAAAACGTCTCAGACTGTCGATGAGCCGGTAAACTTCGATCGTTATAAAGATGATGATAACGACGATCTCGACTTTTGGTTAGGGACGGAGCGCAGCGATG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.40, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 320888-321755 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSAQ01000002.1 Salinivibrio sp. VYel8 NODE_2_length_588456_cov_190.750776, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 320888 28 100.0 32 ............................ TCCCAGCCGTGGCCGTGAAAAGCCTGCCGTCA 320948 28 100.0 32 ............................ TCAGTCGCAGAAACTAAACACAGTTTTGAAGC 321008 28 100.0 32 ............................ GGAACACTAAACACCGAAAAACACGCAAAAAA 321068 28 100.0 32 ............................ TCTAGTGTCAGCAAGTGCGCGATCAAGTTAAG 321128 28 100.0 32 ............................ TATGAAGAAGTGCGGCAGAAAGCGGAACAGGC 321188 28 100.0 32 ............................ TGCGCGTCACGCCTTACGTGTTCAACAAAGAC 321248 28 100.0 32 ............................ GCAAACTGTTTGCACTGATGCAGGACTATGCA 321308 28 100.0 32 ............................ TAGCGGTTTCACTCCTTTGGCCACTTGCTTGT 321368 28 100.0 32 ............................ CGCTCAAATCACACAGGCACTCAGACATTGAG 321428 28 100.0 32 ............................ AGCAACGTAAAAAAATCCTGAAGGTTGTGCTT 321488 28 100.0 32 ............................ CAGTGAAAATCACCATCGGCATCATGCTGAAC 321548 28 100.0 32 ............................ AACGGTATCAGCTTTGCTCCGCTCGACGTCAT 321608 28 100.0 32 ............................ GTTAGCGCGAATGACATAGAAGAACACATCAC 321668 28 100.0 32 ............................ TTCAGTCGCAGCGTAGTACCGTGTGATGTTCG 321728 28 82.1 0 .............C.......G...GTG | ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGGACGATCTGTTACCCCTACCGCATGTTGCCGCGTTTAGCACCGCTTTATGATGTGGTCTTTACGCAGCCTTATATTGAATATGACAACATTGCGTTGAAAATGGCGAAAAGCAAGCGTTGGTATGATATTGGTTTGAGCCATTTCGAACGCTGGTCGCAAGATGTGGGTGTGCCGTGGCAAATGATCAAACCGCACCTATTGGATACGATCAACCTGGCGCGAAATATGTGGCCAAATCAACTTAAGCAATTACCGATGTTAACGGAGCACAAAGCGATGCTGCGTGATCATTGGAAAGCCCTGCACGAGAACTTCACCATTGATTCATGATCCAGCCAAACCGGGCGCTAAATCGGCGCCTTCTTACCCTTATTTTTTGACTATTTAAAAATAAACAATAAATACAGATAGTTACGGAATCCCCTTTTAAACAAGGGTAAAAGGCCATTTTTATCCTAACAGCCTGTTGTCACTGACGACTATTAAGTTATTCTATT # Right flank : GACACAAGCCCCAACACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTTTCACGATCGAGGTTAATCGTTGGCCTTAATGTCGGAGGCGCGCAGTCCGCTTGGGTAATACATGACAGACATCGCACTGGCGCTTGTCCGACCTACACACCATTTTAATATCGGCGGTGCCATTGGCGTACATTGGTTATCGGAATAGCCACTTTTGGCCCGATAATACCATTGGCGTAGGTGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCGACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGAGGCGCCAGTTGCACTGCGCGCGGTGCAAATCACACCTAGCTTGTACGATCGAGTTAGCGCTTCTCCGACCTACGCACAGGCAGCTTAGAAAGGATTGAATGAGAAGTCTTATGTGTGCTGCTGTAAATCCAACGTTGTTCGGCTGAATCAATATGAGTCAAAAAGTTGGGAGTCACT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 332533-333506 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSAQ01000002.1 Salinivibrio sp. VYel8 NODE_2_length_588456_cov_190.750776, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================== ================== 332533 28 100.0 32 ............................ TTGTTGCTTTAAAGTCCTTAACTAATCGCTTA 332593 28 100.0 32 ............................ AACATCCAGGGCAAAACCCTCGACCAGTTTTT 332653 28 100.0 32 ............................ ATCAATATTGCAGGCAGGCCAACCGACTTACG 332713 28 100.0 32 ............................ TCCATTAGCTAGAGGCATAATAGTCTGGTGCT 332773 28 100.0 32 ............................ TGACACATCGTCAACAGGGTCGCCATTGGCGT 332833 28 100.0 32 ............................ AACTACGGGGGGCACATTCCTTTGTTGTTCTT 332893 28 100.0 32 ............................ ATAAGGGTGTCGGCACTCCATACTTGTTTTTT 332953 28 100.0 32 ............................ TCGCCTAGAGCAAGCAGTGGATAGTCTAGCGT 333013 28 100.0 32 ............................ TACAAGACCTTGCTGATATTGTTGACGGCGGT 333073 28 100.0 32 ............................ ACGACTGTATGTTCTGATCGATATCGGCAAGA 333133 28 96.4 32 .............T.............. GCTTAGATGCAGACGATATGGCGAAAGGGGCT 333193 28 92.9 33 .............T....C......... ATCTAATCGCCCCCTCAAGAAACCAAGTCTTTG 333254 28 78.6 136 ...G.........T.......G...GTG ACACAAGCCCCAGCACGGTGTTGGATATGTGGAAATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTAGCCTCAATGTCGGAGGCGCGCGGCGCAAATCACACCAAGCTTGTACGATCGAGTTGGCGCTT 333418 28 85.7 32 ..C...CTA................... AAGCTGGATATGGGTGATATTGACGGTCTTAC G [333422] 333479 27 85.7 0 .....................-G...TG | C [333503] ========== ====== ====== ====== ============================ ======================================================================================================================================== ================== 15 28 96.0 40 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTGAAAGACTATGCCTACTTTAAACGCTGGAACTACAAATCGCCGCAGCGACTGTATAAAAAACTCGATCGGCGAGCGGCCGCGATTGCCAGCAAAAATGGTTACGATGAGGAGGAAGTAAAGCGTCGTTTGTTGGAAAACATTAAAACGGACGACAAACGCTGGTCCCTGCCTTTTATTCAAGTGACCAGCCTGTCGAGCCAAAAACGAGCAGGGCAGCCAAATACCGAGTTCGCCCTGTATATCGAGCGGGAACTCACCAAACAGCCGCCCAATAATGGCCAACCATTCACCTGTTATGGGTTAAGCAGACGAGAGCCCGACCAGCAAAGTGCGGTGCCGTGTTTTTGAGGGGGCAACCCCTCTTTACCCCTTCTTTTTGGCTCTTTAAAAATAAACCGAAAATACAGTCAGTTACAGCAGGTGCTTTTTAACAAGGGTAAAAGTCCATTTTTATCCTAACGGCCTGTTGTCACTGACGATTGTTACGTTATTCTATA # Right flank : GACACAAGCCCCAGCACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATTGAGGTTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGTCCACTTGGGTAATAGATGGCTGACATTGCACTGGCGCTTGTCCGATCTACGCACAGGCAGCGACGATGACACAAGCCCCAGCACGGTGTTGGATAGGTGCACATTGCTAACGGGCGCCTGTCACGATCGAGGTGAATCGTTGGCGCCGATGTCGGAGGCGCGCAGGCCGCTTGGGTAATAGATGGCTGACATTGCACTGGCGCTTGTCCGACCTACGCACAGGCAGCTTAGAAAAATTCGGCTGGCCGTCGATGTTAGCCATGATGGTTCACTGCCGCATAGGCAGCGTGGGTGACACAAGCCCCAGCACGGTGTTGGATATGTGGAAATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTAGCCTCAATGTCGGAGGCGCGCGGCGCAAATCACA # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.67, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //