Array 1 1777186-1778006 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMO01000011.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL00814 2014LSAL00814_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1777186 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 1777247 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 1777308 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 1777369 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 1777430 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 1777491 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 1777552 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 1777613 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 1777674 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 1777735 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 1777796 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 1777857 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 1777918 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1777979 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1794647-1796507 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMO01000011.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL00814 2014LSAL00814_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1794647 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 1794708 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 1794770 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 1794831 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 1794892 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 1794953 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 1795014 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 1795075 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 1795136 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 1795197 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 1795258 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 1795319 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 1795380 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 1795441 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 1795502 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 1795563 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 1795624 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 1795685 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 1795746 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 1795807 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 1795868 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 1795929 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 1795990 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 1796051 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 1796112 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 1796173 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 1796234 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 1796295 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 1796356 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 1796417 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1796478 29 93.1 0 A...........T................ | A [1796504] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //