Array 1 2654122-2655248 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010229.1 Escherichia coli strain S10 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2654122 29 100.0 32 ............................. CGTCTGAACGCGTGGCCGGTGCTGTTCCGCCA 2654183 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 2654244 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 2654305 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 2654366 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 2654427 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 2654488 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 2654549 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 2654610 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 2654671 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 2654732 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 2654793 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 2654854 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 2654915 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 2654976 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 2655037 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 2655098 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 2655159 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 2655220 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2680949-2682563 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010229.1 Escherichia coli strain S10 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2680949 29 93.1 32 ............C...............T TAACAATATCCTGCCACTTTTCGTCAGAATCC 2681010 29 96.6 32 ............C................ TTGGTGAGGTCCAGCCCAGGAGCGAGAGCGTT 2681071 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 2681132 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 2681193 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 2681254 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 2681315 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 2681376 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 2681437 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 2681498 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 2681559 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 2681620 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 2681681 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 2681742 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 2681803 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 2681864 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 2681925 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 2681986 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 2682047 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 2682108 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 2682169 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 2682230 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 2682291 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 2682352 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 2682413 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 2682474 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 2682535 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.0 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //