Array 1 21089-15995 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLS01000009.1 Porphyromonas gingivalis strain WW2903 NODE_9_length_71989_cov_25.799_ID_22203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 21088 30 96.7 36 A............................. ATCGTCCCCGAACTCGATAAGCGAGATGCCCGACTC 21022 30 100.0 36 .............................. TATTCTGGAAAGGGGGAGAAGATGTTGAGGAGAGTA 20956 30 100.0 36 .............................. TGTCATCATAGAGGTCAGACATTCTAATCTCTCTTT 20890 30 100.0 35 .............................. AACTTCAAAATGGAGAATCTCCTAATACCACAATT 20825 30 100.0 36 .............................. CGTATTTAGTCCCATCCATAACGCAGTTGTTTTTTC 20759 30 100.0 35 .............................. CGTATCGAGAACACCCATCCGTATATAAGATGCTC 20694 30 100.0 36 .............................. CTCCGGAATTAACAGCTACACCACCATACCTAAGCT 20628 30 100.0 34 .............................. TTATCTGTTATTACTACTTTTACTTTCTCGTTTA 20564 30 100.0 34 .............................. TGTCCGGCCGGTCTGTCGAAAACTCTCCGACCTG 20500 30 100.0 35 .............................. CAGATGAGCAAGATCGAAAAAGAGATAAACAGAAT 20435 30 100.0 35 .............................. ACTTGACAAGACTCTCCAAAAAGCGTACCCAATAG 20370 30 100.0 37 .............................. GTTTCGTCCATCGAGCGCAGATTGTCCTCCTCGAAGT 20303 30 100.0 36 .............................. AGCGAATCCATCGCGCTGTAGAAGTTGTCCGCGTAC 20237 30 100.0 36 .............................. CTGCCTCCGCAAACGAATTTGTCACCCTTCTGCGTG 20171 30 100.0 35 .............................. CCTCGCCCGCAACGTTTACCGTATGCCCCAGCTCG 20106 30 100.0 35 .............................. GCAGAATCATTGAACTTTAATCAAGAAGATCCACT 20041 30 100.0 36 .............................. GATCTCCTTTAGCGCATAGGTCCCGTTTTCAGTCCG 19975 30 100.0 36 .............................. CAGCCGAGGTCGCAAAAAAATTTTTTTGACGACACA 19909 30 100.0 37 .............................. ACGCAGGCGGTGAACGCCGTAACCGGGGAGCATATCC 19842 30 100.0 35 .............................. GGTATATCCGACCCGATCCCAGCCCCGCCCCCCCT 19777 30 100.0 36 .............................. GCGATTTGCGAGAAGCCTTTGCAGTAGTAGTTGTTG 19711 30 100.0 36 .............................. ACTGCGTCCGTTGCTGCAGCGGATATTTAAGCATTA 19645 30 100.0 36 .............................. CCAGGTAGGTCTGCTTGCCCAGCTCCGCGATCAGAT 19579 30 100.0 37 .............................. TTCAGGAAGCTGCCGATATAGACCGGCAGGTCGTTAC 19512 30 100.0 35 .............................. GAAGCCTTTAAGGCTAATCAGGAGGCTGTCAATCA 19447 30 100.0 36 .............................. ATGTCGTAAACTCGTACTCGAATCGCAGCAAAGTGC 19381 30 100.0 36 .............................. GAATCGGAAGAGTGCTGCAGTAGCTCTTCAAGCATC 19315 30 100.0 36 .............................. GGGGAGAACGTATCTGTTATTTACCCGAATCTGCGT 19249 30 100.0 36 .............................. TTTTATGCGAGGACGGGTGTTTCTCGCAATCTATTT 19183 30 100.0 35 .............................. GCAAAAGAGTAACGTACAGCGCTCCACCACCGCGA 19118 30 100.0 37 .............................. ACTCCGATATCGTGAGGGAAACCCAGCAGCCGCTTGT 19051 30 100.0 37 .............................. TTCCATAAACGAAGAGCGGAATACCGCTTCATCGCTG 18984 30 100.0 37 .............................. CGCGATGCCCTCTCCCAGACCTCTCTGCAGAAGTATA 18917 30 100.0 36 .............................. GCTCAAGTCAAAAGAGTCTGCCTCACGACGCGCATC 18851 30 100.0 35 .............................. AAAGTTTTCAATAGCGTTGCTGCCATCCTTGATAG 18786 30 100.0 35 .............................. GAAGGCGTCCCGGAACAGGGTACCGTCGAAGTCTA 18721 30 100.0 36 .............................. TACGCAGCAGCATCCACTCTATCATCGACCATTTGA 18655 30 100.0 36 .............................. TGCTGCTTCTCGCGCCCATGTTTAAAGATGCCGGTC 18589 30 100.0 37 .............................. TTTCCTACTACTATAAAGCGGCCACGCCCTGCCTGCA 18522 30 100.0 35 .............................. CTCCTCGCAACCCCTTGACAACGTACAGGTTGCCG 18457 30 100.0 36 .............................. GATACAAGAGCTGATGATAGAGGAGTTCAAGAAGGT 18391 30 100.0 35 .............................. CCTCCCCCCGACAACCAACCAATCAGTAGAAAATA 18326 30 100.0 38 .............................. TCTAAAAGCCTCTTTTATCTGTTCCTCTGTTGTCAATA 18258 30 100.0 35 .............................. AAATCCCCAAACTTTCCTACGCAATTACCTACTAT 18193 30 100.0 36 .............................. ACCCCTACCGGATCTAAGAGAATTGTTTCTGATGAT 18127 30 100.0 36 .............................. CACAGAACATTCCATTATAAAATTCTACAACACTCA 18061 30 100.0 33 .............................. ATATTGCGTTTATGTACTGCTTCACAAATGTAA 17998 30 100.0 36 .............................. CGTCATAATGTAAATGTTGCACTGTTGCCATTCTGT 17932 30 100.0 35 .............................. AACGTCGTATCTATATAAGTCGGAAACAATCTCCC 17867 30 100.0 37 .............................. CTGTTTGCAGCTCTTGAAACAACACTGTCCGGAAAAA 17800 30 100.0 36 .............................. TCTATCGAACGGAGTTTTTGAAATTCATCAAACACA 17734 30 100.0 34 .............................. CGATACGACCGACAAAGACGGGAAGAACGGGCTT 17670 30 100.0 37 .............................. CTTTACTGTATTAGAGTTACCCAGCTTCTTATCTATA 17603 30 100.0 37 .............................. ATAGCGTCGTATCTATATAAGTCAGCAACAATCTCCC 17536 30 100.0 36 .............................. AGTTAATAGACTTTTCCAAGAGGATTAGTGAGCGAA 17470 30 100.0 36 .............................. TAGTTGAGATATTGTTGCCAATCGTGCACCTCTTTG 17404 30 100.0 37 .............................. GATACCAGTTTCGCACGACACAAAAAGGGCGAAATTG 17337 30 100.0 34 .............................. GGGCGTATCATCAGCTAAAGCACGTTATCAGTGA 17273 30 100.0 35 .............................. TTCCCATTGAACTGGCTGGTATCTCCTTTCCAACG 17208 30 100.0 37 .............................. GAGGGTTTGACCCCTACCGCCGTACATGATGCCCTGC 17141 30 100.0 36 .............................. GATCATGCCTTCTTACAACGCTTCTTTGTCTGATGA 17075 30 100.0 36 .............................. CAAGGCGGCCGCCTGGCGAAACTTGCAGATACAGGT 17009 30 100.0 34 .............................. TCAAAAAGGAATTCATCCACCGCACCGTGAGCGG 16945 30 100.0 35 .............................. AGCCAACGAGGTGCGGCGCAAGAAGATGATCGAGC 16880 30 100.0 36 .............................. TGTGATGTACGGCTCGGTGCTCCCGACGCTAAAGTA 16814 30 100.0 37 .............................. TACATACTGAAGAATACGCTCTGCGCTGCCGTCCTCA 16747 30 100.0 36 .............................. CGACAAGCGCATCGATGAAGTGCTTGTAAGCTCCGT 16681 30 100.0 35 .............................. TCTATACCTGTATGCTCAGCGACTGAAAAAGGCTT 16616 30 100.0 35 .............................. GCAACAGTTAAACAATTCAGAGTGACAACGAAATC 16551 30 100.0 35 .............................. CAGCTCCCATCGCATTGTTGAACGAGGTGATTTCC 16486 30 100.0 36 .............................. GGGTATCTCGACCCCGATAAGGCCGCGGAACTTGTC 16420 30 100.0 36 .............................. CTTGGCCGTGTATCGGAACAAAAAGCTGTATTGGAT 16354 30 100.0 36 .............................. CTTGTTGCTTCCTGTACAGCCCTACAATCTCGTACC 16288 30 100.0 36 .............................. ACCTCGATGACATCATCGATCGCGGCCCCTTTCTGC 16222 30 100.0 36 .............................. AGCATATTGATCGACATGCTTCTTTTTCCCTCCTCA 16156 30 100.0 37 .............................. CTCGAGACCCCATACTGGGGCCACAGCCTCCTCGAGC 16089 30 100.0 35 .............................. CTTTAACCCCGAGCGCGGGCATATTTGGGAGCACA 16024 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 78 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : AAGCCATGATGAGAAATTATCGTGAGTATGCACCTGTAGAGCTCGGAGGTTCGCCCGTGCAGGAAATATTGGACTATGCTTCTCTCGAAGGAAAAGATTTCACAAGAGGAGAGAAGTTTTCACTCGATATGCCTACAACGAGCAATGTTCTTCAGTACAAGACCGAGGATGGCACCAAGGTTTCCATCCGTCCGTCAGGTACTGAACCGAAAATCAAGTTTTACATCGGAGTTCATTTCTCGGTCGCTAATGAGCAGGAATTAGACCGGGCCTATATAGTAGCAGAAGAAAAGATTGCTACCATCCTCCACGACCTCGGTGTCTGATCTGCTTTTTCGGCTATAGATTAAGATAAATCAAGGGCTGCACCACAAGGGACTCTCCCCTTTGGTACAGCCCTTAGTCTATTTTTTTATTTGTATGATATCCCCTATGCCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATAC # Right flank : CCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAAAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 78576-78077 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLS01000001.1 Porphyromonas gingivalis strain WW2903 NODE_1_length_293379_cov_23.8771_ID_22187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 78575 36 100.0 31 .................................... CGCTCAAAACGACTCAAGAAAAACAAATGAG 78508 36 100.0 30 .................................... AGGCGTCGTTGAAAGGTATTGTCTACGTAT 78442 36 100.0 30 .................................... TCTTCCTGTTTATTGGAGGTGTTTACTACT 78376 36 100.0 30 .................................... GAATTGATGAGACAAAATCTTGGTCTTATT 78310 36 100.0 30 .................................... ATATGCAAAGAGAACGAGAAGAGGGTCAAG 78244 36 100.0 30 .................................... AGTAAACAAAACATAAATCTGAAAAGGCGA 78178 36 100.0 30 .................................... AAAATGGAGTATAATTATAATCTTAATACA 78112 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATATATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGCTCAAAAGGCCTTTAGGGGAGGTAAATAAAGAGGCACCCACCGAGTTCTTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGACTCTCAGGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCGCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAAGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCTCTCCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCACCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACAGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTATGCTCCTGGCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTTCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 33147-32781 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLS01000020.1 Porphyromonas gingivalis strain WW2903 NODE_20_length_43005_cov_20.8469_ID_22225, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 33146 36 100.0 30 .................................... TCTAGGTATTGTTTCATTATGTTAGTACTT 33080 36 100.0 30 .................................... TTTACCGAAGGCGCACTTTACTATTGGGGT 33014 36 100.0 30 .................................... TCACAAAAGTTCTAAAATAAAACCGGCACC 32948 36 100.0 30 .................................... ACTATGTCCACGCGGGGTTTCTGCGGAGCG 32882 36 100.0 30 .................................... AACCTAACCTTACCATGTACTGGGTGGATT 32816 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : AAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTACACGAGTCGTCGAGCAGGGAGGGTAAGAGCGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATGCCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCATGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCGG # Right flank : TATTATTCCGAAAGGAGAAAGAGGGGAAGTTGTGCTGTTGATGGGGAAGTATTTCTAAATTAGCGATCGCTAAAGTGATGGAAAATGGATAGGGGGATCGTGTTCGGAGGAGAGGGTTGTAGCCGACAGTGTTTGTGTGCAGCTATCCATTCGATTGGGAGGCCTTTCGTTCTCTTCCTTGGCTTTTGTCTGTAAATCTCGATTCTTTTAACTCATATAATTGTCTGTTCCTATCAAACGCTCTCATCTCCTTATCAGTGCTGCTTCATCGGGTGGTGGAAAGACTACTTTCACGCTCGGATTGCTACGATTGCTTCGAAGGCGCGGTCTCAAAGTGCAGCCTTTCAAATGCGGTCCCGACTATATCGATCCTAAGTATCACCGCCTTGCATGCGGAACGGAAACGGTGAATCTGGATGCTTTCATGATGAGCCGGGAGCATATCGCCCGACTTTATGATCGCTACGGCAGTGAAGCCGATGTTTCCATCGTAGAGGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //