Array 1 52996-56075 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044115.1 Roseomonas mucosa strain FDAARGOS_658 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 52996 29 100.0 32 ............................. GCATTGGACGTAGATACGCCTATTCCAACCCC 53057 29 100.0 32 ............................. GACACGCGGGCGGATTCCTCCGGCATGAGGCG 53118 29 100.0 32 ............................. CTCATCAGCTCGGCCTCGAAATCGGCGCGCCA 53179 29 100.0 32 ............................. TGCTCCCCCGTGCTCTCGAATTCGGCCACGGA 53240 29 100.0 32 ............................. ACAGCCGAGCTACGCAAGCACGACAGGGATTT 53301 29 100.0 32 ............................. CAGGTCCCCTCCGGATCAGGGCCGTGTGGAGC 53362 29 100.0 32 ............................. AACCCCACGGCCGGTCCCCCCGGCTGTCATCG 53423 29 100.0 32 ............................. TAGAAGCGCCGCATCCGCGCCCGCCGCGCCGT 53484 29 100.0 32 ............................. GCGTCGCCGTCATCACGGTGGGCGTGGACACC 53545 29 100.0 32 ............................. GATCGTTCTCGTCGCCGGAATCCTGGGTTGGC 53606 29 100.0 32 ............................. GAGGCGACACTGTGGGGAGGCTGAGATGCCGA 53667 29 100.0 32 ............................. CGGCGTCAGATCCTCATGCTGCGTCGCCTCCA 53728 29 100.0 32 ............................. AGCGGCTAGACCACGCGGCGCGCGAAGCGGAG 53789 29 100.0 32 ............................. CCGGCATCCCCCGCAGCAATGCCCGGGCCCTG 53850 29 100.0 32 ............................. CGCGCCATCGCGTCAGCAAGCTGCCCCTGCGC 53911 29 100.0 32 ............................. CGAAACCACGGGCGGGCAGGGCGGCCGCCAGG 53972 29 100.0 32 ............................. AGTTTGCCAGCCGCCTCATCCGCCGCCATCGC 54033 29 100.0 32 ............................. GAGGAGGAGACGACGCATCACGAGCGGTCCTC 54094 29 100.0 32 ............................. CCCGATCCGCCGACGGCGCCCGCTCCCGCAGA 54155 29 100.0 32 ............................. CGGCAGTAGACCCACCAGCCCCGCGCCGACGG 54216 29 100.0 32 ............................. GGATCGAGGTAGCCGCTCGGCGCGGCCCCCAG 54277 29 100.0 32 ............................. AGGAGGAGCCGGTGGAGTTTCCCTCCGCGTCC 54338 29 100.0 32 ............................. TGTCCTGCTTGACCCGCCCGCCCGAAAGCGCG 54399 29 100.0 32 ............................. AGACCCTTCGCAGGCTCCTGCCAAAGTCCATG 54460 29 100.0 32 ............................. ACCGAAAACGCCCTGGCGGCCCCTCCTAGGCC 54521 29 100.0 32 ............................. ACCCCGGACGGCACGCCCGTCGAGGGCGAGCA 54582 29 100.0 32 ............................. CCGGGACCGGCGAGTAGCGGAACAGTTCCAGC 54643 29 96.6 32 ............................C CTCTCTGCGCCTGCATGCCGGCCCGCTGGACC 54704 29 100.0 32 ............................. ATCCTGGGGGAAATCTTCACCCCCACGCGGCT 54765 29 100.0 32 ............................. GGCGAGGGCGGTAGCAGCGAGCCCGCCCCTCA 54826 29 100.0 32 ............................. GACTCCTGGCCACCATGCTCGCTGCTATCGAG 54887 29 100.0 33 ............................. GATACAGCGTGAAACTGAGCATTGCCTTGCGAC 54949 29 100.0 32 ............................. GCGCAGTCGTTGCCCAATGGCGAAAGCGGTAT 55010 29 100.0 32 ............................. AGGGTCAGGAGGGACGCCCCTCTCCCCCCAGA 55071 29 100.0 32 ............................. GGCACCTATGCAGTGGAGATCCGCCCCGGGAA 55132 29 100.0 32 ............................. TACGGCACCACGCTGGACAGCCTCTCCCTCCG 55193 29 100.0 32 ............................. CTGTCTGCGCGGTGTCCTGGCTGTCTCCGGGG 55254 29 100.0 32 ............................. TACGGGTGCGACCTGACCGGCCTCTCCCTCCG 55315 29 100.0 32 ............................. GCGATAACCTCGTCAACAGCCGCATCCTGGAG 55376 29 100.0 32 ............................. CCGTGGCGCATGGCTGATATCCGCGCCACCTG 55437 29 100.0 32 ............................. CCGTCCAGCACCTTGCCTGTGACGACGCAGCA 55498 29 100.0 32 ............................. AGCCGCAATCCTTCTCGGTCCGGATGTGGCCA 55559 29 100.0 32 ............................. TTCGAGGCAAATGCGCGCGTGCGGTTGATAGC 55620 29 100.0 32 ............................. CCGCCGTAGCACGGGAAGCGGCGGTGGTGGCG 55681 29 100.0 32 ............................. GAGTTGCTGGGAACCGCCGACCGCGAGCAGGC 55742 29 100.0 32 ............................. GGAGTAAAGGGCGATCAGGGGACACAAGGCAT 55803 29 100.0 32 ............................. ACCGGCTTCCCGTTCAGGCTCAGGATGGCGCC 55864 29 100.0 32 ............................. CGCTACGGACGCTCGGGTGGACCTTCGGGGAG 55925 29 100.0 32 ............................. AGGGCGCCCAGCCGGTGGAATTCCCAGGTGTC 55986 29 100.0 32 ............................. CCCAGGCAGATGCGGAACTGCTCGGAGACCAT 56047 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.9 32 GTGTTCCCCGCGAGCGCGGGGATGAACCG # Left flank : GTGCTGGGAAAGCTGATCCCTCTCATCGAAGAGGTTCTTGCAGCCGGAGGCCTGCCACTGCCGGCCGCACCCGAGGAAGCGATGCCCGTGGCTTTTGAAGCTCCGCCGGGATTGGGTGATGCTGGTCATCGTGGTTGAAAACGCGCCGCCGCGCCTGCGGGGAAGGCTGGCGGTCTGGCTCTTGGAGATCCGGGCCGGGGTCTATGTCGGCACCTATGGCCGACGTGTGCGGGAAATGATCTGGGAGCAGGTGCAGGCGGGGATCGAGGAGGGCAACGCCGTCATGGCCTGGGCCGCCCCAACCGATGCTGGTTTCCTGTTCGAGACCTGTGGACGAAATCGGCGTGTGCCGACCGACATGGACGGGTTCCGGCTGGTCGCCTTTGGCCCGGAAGCGGCATACTCTGCCCTGCCACCCATGTCTGACCAGAACAGACGTTCCAGGCGGTAGCCTCTTTCACAGCAGAATAAGATCGCCGAAACAGCCACTTACAGGAAGA # Right flank : GAGAGCCAGAAAGACCAACTGTGGATCGGCATGGAATAGGAACCCTGTTGGAGGGGTGATCGGCGTCCAAACGGGACCCCACTGACGGCGGGGTTCACAGTGGTTTCCGGGATGATCGGGAGCCAGTGCTGGGATGCTGGTCGTGGAGACAGTGGCAAAGATCCGGCGCCTGCACCGGGTGCAGGGCAAGTCGATCAAGGCGATCTGTCGTGAGCTCGGGATTTCGCGAAAGGTGGTCCGGAAGGTTCTGCGGTCCGGGGAGACGGAATTCCGCTACAGCCGGGCGCGGCAGCCGCAGCCCAAGCTGGGGCCGTGGCAGGCCGAGCTGGAGCGCCTGCTGGAGGCGAACGAGGCGCGGCCGCGGCGCGAGCGGCTGACGCTGGTGCGGGTCTACGAGACGCTGCGTGAGCTGGGGTACGAGGGCGGCTACGACGCGGTCCGGCGACATGCGCGGGGGTGGCAGGCGTCACGGGCGACGGCGGTGGCAGCAGCCTTCGTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 421160-423228 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044117.1 Roseomonas mucosa strain FDAARGOS_658 chromosome 4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 421160 32 100.0 33 ................................ CAGATCATGGTCCTGGAATCGTGGATCGGACGC 421225 32 96.9 32 T............................... TCGGTCACCGTGCAGCCACGGTTGAAGCGGGG 421289 32 100.0 34 ................................ GCGGCCATCGCCGCCGACCCGCTGAAGTGGGAGC 421355 32 100.0 33 ................................ GACGCTGAACTCCGGGAATTCGATCCGTCGAAG 421420 32 96.9 33 C............................... AGCCATGCCGGGCTGTCACCGGCCGGTGCCGGC 421485 32 100.0 33 ................................ ACGGTGCCGAGCCACGCCGCGAACTGAGCTCGC 421550 32 100.0 33 ................................ GTAGACATATCGGCGGTCCGACCGGCCGCTTAG 421615 32 100.0 35 ................................ CGGGCGATGTTCTCGGTGCTGAGGCCCAGATCGCC 421682 32 100.0 33 ................................ CGCTCATCTCAGAACTCCAGGCATGAAGGGGGC 421747 32 96.9 33 A............................... AGCAGCGAGCGGCCATCGGGCAGGATGCGCGAG 421812 32 100.0 34 ................................ TCCAGCAACTCGACGTAGCGGGTCTGGCGCTCGT 421878 32 100.0 34 ................................ TTTCGGTTGGTCGGGGAGCACGCACTCGACCATT 421944 32 100.0 34 ................................ GCGCTGGACGACGGGCAACTGGCCTGGCGCCGGA 422010 32 100.0 32 ................................ ACCGAGGAGCTGCGGCACGCCGCGGCGCAGGA 422074 32 96.9 33 C............................... ACATCAAGCCAGCTCAGGCCCACGCAACCAGCC 422139 32 100.0 34 ................................ TCCTTTTCGCTCCGTCCCGCTCTCTCGGCCGCAG 422205 32 100.0 35 ................................ GAGAACGGTACGCGGGCAGGTGTCCTGAGCGAGGT 422272 32 100.0 34 ................................ AGCGGCGACACGCTGACCGCCACCGGCACCGACA 422338 32 100.0 33 ................................ TCCGAGAGGGTCACGACGAGGCCATAGGTGTCC 422403 32 100.0 34 ................................ CTCGTCCTCTCCAAGCGGCTCGACGAGCAGACGC 422469 32 100.0 35 ................................ CCGGCCGATACGACCGAGTTGCTCCCTGAGTGGGA 422536 32 100.0 34 ................................ GCCGTCCGGATCGCCAGGATCGAGGGCGGCAGGG 422602 32 100.0 34 ................................ CAGTACGCCGTCGGCCAGACCTACACGATGGACG 422668 32 100.0 34 ................................ CTGGCGGGCCCGGCACAGGATCACGCGGACCGTT 422734 32 100.0 34 ................................ TCGCGCCAATCGTCAGCCATCGAAGCGCGCCAGC 422800 32 100.0 35 ................................ GAGAACGGTACGCGGGCAGGTGTCCTGAGCGAGGT 422867 32 96.9 34 ......................A......... ACCGAGGAGCTACGGCACGCCGCGGCGCAGGACA 422933 32 100.0 34 ................................ TTCCGGCGCGTTTGCCTCAGACCAGAAGTCAACT 422999 32 100.0 34 ................................ GTGAGCCGGGGGGGATAGACCACGATCCCATCGG 423065 32 100.0 34 ................................ TACGGGGGCCGTGACTTTGGCCCGGTGTGGTCTT 423131 32 100.0 34 ................................ TCCGGCCGGAGCCTGGACCGGGCCGTGGCCGGGC 423197 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 32 32 99.5 34 GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Left flank : CTGGAAGTAGGCCAAAGCCATGCTCATGCTCATCACCTATGATGTCAGCACCGTGACGCCAGCGGGACGTCGCAGGTTGAGACGTGTGGCTCGTGCCTGTCTCGACCATGGTCAGCGGGTGCAGAATTCCGTGTTCGAATGCGAAGTTGACCCGGCACAGTGGGCCGCGCTACGCGCGCGTCTGATGGCCGAGGTTGATCTGGAGCAGGACAGCCTGCGTTTCTACCGCCTCGGCGCTTCGGGCAGAGCCCGGGTGGAACATATGGGTGCAAAGCCCGTTCTGGATCTGGAAGGACCATTGGTCTTCTGAGATGACACAATTTGCGCGATCCGGTAGCGACCATGCCGTGGCGTGGTGGCTCGCGGAGCGCTGAACTCATTGAAAACAGAAGAAGAGTTTGTATAAGCGGAAAGACGCTGCCGGACCGACCTAGGCTTCCACCCTGGTTCGCGACGAGTGGCGGGCAAACCATGGAGCTTTCACAGAAAAAAGTGCCGGG # Right flank : CGCTATCAGTAGAGCGGCCCTAAGTAGTCGGCCTTGAATAGCTTGGTCAGTGCGTTCGGCCAGCCGCTGGATAGGGGCTGGTCTGGGTGAGCGCCTGAACGAGACTGGCGAACAGGGCGAGCAAGAAAGCCCGGAGGTGGGCAAGGATCTTGCGGATGTTGTGGCCGCAGCCGCAGAGCACGGCGAACAGGGCATCGCCGAAGGTGCCCTTGAGGGCACAGCGGGCGAGACGGCCGTCGGTCTTCAGGTGGCCGATCTCAGGCTCGATGGCGCTGCGACGGCGCAGCAGCCTGATAAGCCTTGGTGTCAGCCGGCGGCGGGTGCCGCTGACCAACACCTGCGTGCCCCACACGCCATGGCCGCGGTAGCCGCGATCGGCCACGACGGTACTGGGATGATGGCTGGTGAGGGTCTCGACCTGCTGGATGGCTTCGGTGAGGGTGTGGCCGTCATAGGGGTTGCCGGGCATGGAGCGCATGCCGACGACGAAGCCGCCCTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //