Array 1 34833-34026 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHNC010000089.1 Serratia marcescens strain B3 Contig_89_43.2852, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 34832 28 96.4 32 .............C.............. AGATGAAGGGCCACCGGCTTGATAACCCTCTT 34772 28 96.4 32 .............C.............. TTCATGGCCGGAACCTGTTATTTTAAGGAAGT 34712 28 100.0 32 ............................ GCTGGTGGCCGACATTTTGCCGATTGGCACCA 34652 28 100.0 32 ............................ AATGCCAGCGATCTGTCTACTGCGTCGGGTAA 34592 28 100.0 32 ............................ AGCAGGGCGAGAATGGTTTCCGGTGTTGCGTT 34532 28 100.0 32 ............................ GGCTGCGCCTCCCGGTTAGCCGCACGCACCAT 34472 28 100.0 32 ............................ CGGGGCTATTGCGCAGTCTACTCAAAATAACG 34412 28 96.4 32 A........................... GGTTACCCGGTACGTGCGGCACAGCAATAAAG 34352 28 100.0 33 ............................ AAAGCAGAAAAGAAATGGCTGGACGAACTGCAA 34291 28 100.0 31 ............................ TTGACCGCCAGGGACACGAGCGAATCGCGTA 34232 28 100.0 32 ............................ TTTGCATCGTCCGGCAGGGATTCACTGTCGAG 34172 28 100.0 32 ............................ ACTGACGCAGCACTTGCAGCTATCCAGGCGCA 34112 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 34052 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 44605-43314 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHNC010000089.1 Serratia marcescens strain B3 Contig_89_43.2852, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 44604 28 100.0 32 ............................ GCGACAATTACTCGTTCGAAGTGCATTTTCAT 44544 28 100.0 32 ............................ TGACGGAGACTATCTCACAGAGGAAATGAGCC 44484 28 100.0 32 ............................ GCGACGACATGGGGCCAGAAAAAACCACCATT 44424 28 100.0 32 ............................ ATGGGAAAAGCACCACGCCCTAATGCGCGTCT 44364 28 100.0 32 ............................ TTAACAGGGCGGAAAAACGCGGTCAAGCGTAA 44304 28 100.0 32 ............................ GCCCTGGGCGGAGGTAGCCACAAAGGCGCATA 44244 28 100.0 32 ............................ TGGGTGATGGCGTTGACATCTTGCAGCAGCAG 44184 28 100.0 32 ............................ GCAGGGTCATGCATCGCATTATTGCCGTTGAA 44124 28 100.0 32 ............................ GGCAGGCAGTAAGGCGGCGAAGAAAGAAAAGA 44064 28 100.0 32 ............................ ACGCGGGAACCGTTCACGGCTTCTTTTGCTTT 44004 28 100.0 32 ............................ AATATGTCGGAGCTTACAACACGCTCCACAAC 43944 28 100.0 32 ............................ CTTCACGTCCAGCGTAAGGCCGTCAGACCAGT 43884 28 100.0 32 ............................ CAGTGGACGTACTGTTACATCGACTCGAGAAA 43824 28 100.0 32 ............................ AGATGGCGAGCGAACTGATACATGATACCTGT 43764 28 100.0 32 ............................ GATATATTCAGAGGGACCCGTTCTATCACCCC 43704 28 100.0 32 ............................ TGCAGGCCCAGCAATTCCATAACGCTGCGCAC 43644 28 100.0 32 ............................ GTGAAGCGACATTCTCCGGCAACGTGGACGCC 43584 28 100.0 32 ............................ CTCAGCGCGCACGATGAAGTTAAACTCATCGC 43524 28 100.0 32 ............................ TTTGACTACAGCATAGCAATGTAAGGAACCCA 43464 28 100.0 32 ............................ AGAGAGAAGATCTCTAAGGGATCGAGTGTTTA 43404 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 43344 28 96.4 0 ....................A....... | G,A,A [43317,43321,43323] ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //