Array 1 94583-95587 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFZ01000012.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N45395 N45395_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 94583 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 94644 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 94705 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 94766 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 94827 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 94888 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 94949 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 95010 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 95071 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 95132 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 95193 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 95254 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 95315 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 95376 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 95437 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 95499 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 95560 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111856-113654 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFZ01000012.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N45395 N45395_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 111856 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 111917 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 111978 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 112039 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 112100 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 112161 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 112222 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 112283 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 112344 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 112405 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 112466 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 112527 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 112588 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 112649 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 112710 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 112771 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 112832 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 112893 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 112954 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 113015 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 113076 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 113137 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 113198 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 113259 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 113320 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 113381 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 113442 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 113503 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 113564 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 113625 29 96.6 0 A............................ | A [113651] ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //