Array 1 74033-76074 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVHA01000017.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033850 CFSAN033850_contig0016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 74033 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 74094 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 74155 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 74216 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 74277 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 74338 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 74399 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 74460 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 74521 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 74582 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 74643 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 74704 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 74765 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 74826 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 74887 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 74948 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 75009 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 75070 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 75131 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 75192 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 75253 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 75314 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 75375 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 75436 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 75497 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 75559 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 75620 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 75681 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 75742 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 75803 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 75864 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 75925 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 75986 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 76047 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 92207-93499 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVHA01000017.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033850 CFSAN033850_contig0016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 92207 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 92268 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 92329 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 92390 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 92451 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 92512 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 92573 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 92634 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 92695 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 92756 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 92817 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 92878 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 92939 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 93001 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 93104 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 93165 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 93226 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 93287 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 93348 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 93409 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 93470 29 96.6 0 A............................ | A [93496] ========== ====== ====== ====== ============================= ========================================================================== ================== 21 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //