Array 1 801714-802275 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076458.1 Novisyntrophococcus fermenticellae strain JN500902 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 801714 32 100.0 36 ................................ CCGCTGTGTCGGGCTTGATTTCGCATTTTTCGCGGT 801782 32 100.0 34 ................................ CATATAGGGATGATTTTGGGCTGTAACCGTTGTA 801848 32 100.0 34 ................................ AAATCTTAAGTTTTATATTAAACCTATGTGCATC 801914 32 96.9 34 .........................T...... TACCTCTTTCCCCGGCACTCAACGTCCGGACGCT 801980 32 100.0 34 ................................ ACTCTTTCAATGAAGTAAATAACAATTTTACGAG 802046 32 96.9 34 ...............G................ TTGATTCCAATTTGCTTTCTGGCTTCAATCTTTT 802112 32 96.9 34 ...............G................ ACGGCTCCTAATTGCGTATTGTATTATTTTAATC 802178 32 87.5 34 ........T......G....A...T....... CAGTCACTGACTGGGGGTCATGAGATCGCTGGCT 802244 32 75.0 0 ..........T..C.G...GT....T....CG | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 94.8 34 GTTACAATCCCTATAAACATGGGAACTGAAAC # Left flank : GTAAAGGCATTGGGATTAAATTCGATGATTCGGGCGTCAAAAGTAGGAGGAAATTATAAGGAGAGGCTTATGGGATTGGGTTTGATTATACGAAACTGCGTGGGGGTTTGGAACATAGCAGTGGTGGAATCGTCTAAAGCCTCCTACCGGATGCTGGGTTACGCAAGGTCTTGAGATGGTTCATGTTTTACTGGCCTGTGATACTCCGGTTTTTATTCGAATGATAAAATTTTTATTGACGCTATTGAAGGGAAAGGGTAGAATAAATATAGATGTAGAGAAGGTTAATGTTGACAAAGGCTTCAGCATGTAACCAAGGGTGGTTTGAATAATAAGAAATTAATACAATATCAATATATTGATGGCAGTGCGAACCTATAGTGGACATTGAAAAGTGGAATGAAAGAATGGGTGATTTCGAGCCTAAAATGTTAATAAAATTGGGGTTCGCACTTTTGAGCGCTGAAAGCCTTTAAAATGCAGGCTTATAGGTGTCTGCT # Right flank : GTAATTAATGAAATCATCCTCATTGAATCAGCAAGCTATTTAATGTCGGCTATACTAGCTAATAGCTCTTAGTATAATAATCTCGCTGCATATTGCATAAACACGTCATCATAACTCTATGAGAGTAATTGATGGCGCTTTTGTTGTATGAATATTTTGAATAAATTAGGCAAATACACTATTTTTGTGATAAATTGCAAAAAAATCAGTGAAATAAAGCGGGATATATTAAAATTGTTGAAAATTGGGAACGAAGGATATATAATAATTTCAAATAGATAACATTTAGACTTGAAATACTTTAAAATGAGGGTATTTATCGTGAAGATTACAAAGAACGCAAAGAATGGAAAAGTACAATTCTATCGGAATATGGAACAAGGTGGTCTTAGAGATAACAAGATAGGGAACAGTGAAGATAAAACGGAATCTGCCATTGAACAGCTGGATCTAAAGAAGTCGTATACTGGAAGAATCCTCTCCCCAGATGCTAAAAGGGG # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATCCCTATAAACATGGGAACTGAAAC # Alternate repeat : GTTACAATCCCTATAGACATGGGAACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1008069-1015950 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076458.1 Novisyntrophococcus fermenticellae strain JN500902 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 1008069 31 100.0 35 ............................... TGTCAGGTTTTGCTTTCTGTCGATAATCAGTCGGG 1008135 31 100.0 36 ............................... AATTCCATCAAAGCAAAAGGGCAAGAACGATTAGAG 1008202 31 100.0 36 ............................... CTGCGCCAGATCCCTTAAATAATATTGTAGTCTTCG 1008269 31 100.0 36 ............................... ACGTTTCTTTTTGAGTCGGTAAATTGCCAGCTCCGG 1008336 31 100.0 35 ............................... CCAACTCCTTGTTGGAACGGCTTTTCCCTTTTCCG 1008402 31 100.0 35 ............................... AAAAAAAGAGAGGGCAGAACGTGTGACAGAAGCGG 1008468 31 100.0 35 ............................... CGGTCAGCTATTTGTTGGAATCAAATATGGAAATG 1008534 31 100.0 35 ............................... AGTTCAATGCAACCGATGGTATGGTCGGAAAGATG 1008600 31 100.0 34 ............................... TCCAATCCCAGCATAAATATGTATGCCGTCTGAG 1008665 31 100.0 35 ............................... TTGGAAAAGACCAAAGTGATACTTGCGATATTTGG 1008731 31 100.0 35 ............................... TAAGTGGCAGGCATTGATAGATAGCACTTCAAGAG 1008797 31 100.0 36 ............................... ACACGGCGATAGAAGCGGTCAATGAATCTGCTGATG 1008864 31 100.0 35 ............................... TTGGTTAAGGTAATAGATATGTTGCTTCCATGTTG 1008930 31 100.0 35 ............................... TTCGACATATTTTGCCGTTGCATGTCCGATTTCTG 1008996 31 100.0 37 ............................... TTCGTAGTGGCTAAAAACCCTACACCGCCAAGACCCG 1009064 31 100.0 34 ............................... CATACGTCATCATCTACTTGTTGGATAACTGCAG 1009129 31 100.0 35 ............................... TACGACCCTGTTCCCAGTCCCTTATAGTACCGACG 1009195 31 100.0 35 ............................... ATAGGATTTTAGCATTAAAGGATTTTAGGGATGTG 1009261 31 100.0 34 ............................... TCTCATATCAATCATTTCAATAGTCGTGGTTTGG 1009326 31 100.0 36 ............................... GGTGTTACCATAAACGCATGATTTATCATGCACTGG 1009393 31 100.0 36 ............................... GAACAGGAAGACCCGATTGTCAAAACTAGGATGAAG 1009460 31 100.0 35 ............................... GAATTTCTCCGTGTCAGGAACAAAAATTTGAATTG 1009526 31 100.0 36 ............................... CGGATGTTTCCGGACAATGACAGTGTTTTTTTATGG 1009593 31 100.0 36 ............................... ATATTGAACATATCACACCGTTAGAGGATGGCGGGG 1009660 31 100.0 36 ............................... AAGCAGGTCAATGATTGCGAAGATTGAAGCTGGAAG 1009727 31 100.0 37 ............................... CGTGCACATCAGCATGACCATATATTTCGGCGTTACG 1009795 31 100.0 36 ............................... AAAAATTTGTTTGAATCGAGTATCTCCGTCAAATAG 1009862 31 100.0 36 ............................... ATTTCTGACAAGGCTTTTGTGTTGAACAGTTTCAAG 1009929 31 100.0 35 ............................... CTTGTGGGAACAGGGAATCTACCAAAAAACAATCG 1009995 31 100.0 37 ............................... AAACATATTGTCTGGGCATATGATAACCGCTTCAACG 1010063 31 100.0 35 ............................... CATCAAGCGATTGAAGCGGTGAATACATCTGCTGG 1010129 31 100.0 35 ............................... CAAGAAACTTGTAACAGATGATGTACCATAGCAAG 1010195 31 100.0 36 ............................... GAGTCGGTTGGCAATTTGTTATCCGCCAACGAGGTG 1010262 31 100.0 38 ............................... AGTTCAACGCAACCGATGGTACGGTCGGAAAGATAACG 1010331 31 100.0 38 ............................... CCCACATCTCATTTACAGTAGAGCTGTCCCACATCTTG 1010400 31 100.0 37 ............................... ATGGTCATATAAGTGATACTAGGTGTTCAACACTGTG 1010468 31 100.0 35 ............................... TAAATGGCAGGCATTGATAGATAGCACATCAAGAG 1010534 31 100.0 35 ............................... TGGGATTGTTCCACCAGATAACATCTTCAAGAGAG 1010600 31 100.0 37 ............................... TAAATGGCAGGCATTGATAGATAGCACATCAAGAATG 1010668 31 100.0 37 ............................... AGAGACAAGTAGAATGGTATGGCAATGTTATTTATAG 1010736 31 100.0 35 ............................... CTGAATCGCTGGGGCGGACAGCCTATTTTTGATAG 1010802 31 100.0 36 ............................... AGAAAAGAGAGGGCAGAACGTGTGACAGAAGCGTTG 1010869 31 100.0 35 ............................... GGCTGTTCCGGTGACATTGTCTTTTCCGTATACCG 1010935 31 100.0 36 ............................... CGCAATCGTCGTACCAACCGATCGCCGGACTGTCTG 1011002 31 100.0 36 ............................... TTGTTGCGTTGTTTAATAAAAACTTTTTTTACATAG 1011069 31 100.0 35 ............................... CTTTCCCAGCTTTCCCGGCTGTATCGGTAATTTTG 1011135 31 100.0 35 ............................... AAGGAGACCATAGACGTTGAGATTTTGCCTGATGG 1011201 31 100.0 36 ............................... CAAAATGGGAGCCGATGTTTGAGGCAGATGCAAGCG 1011268 31 100.0 36 ............................... TTTGCTCTCCATTGTGTGTCGGTATACCGCCTTTAG 1011335 31 100.0 35 ............................... CATGGTATCAATCCACGTTCTGGTGCAGCATCCAG 1011401 31 100.0 34 ............................... CTGTCACGCTTGTACAGATTAAGAGCTTCCTTTG 1011466 31 100.0 36 ............................... TTTCAACACATCTTATAATAGTGTTGATTAATTATG 1011533 31 100.0 35 ............................... AGTCAGGCGGTTCGCTTGAGGTTTGCGAAGTCTAG 1011599 31 100.0 35 ............................... TGATCGTGGGGTACTGCAAATCGGAAAAATTGAAG 1011665 31 100.0 36 ............................... CTGCCAACGCGTCCGGAGCAGTGACAAACTATGCCG 1011732 31 100.0 36 ............................... AGTTTGACCTGACAGAATACATCAAAGATGAATACG 1011799 31 100.0 36 ............................... CCTTAAGTACATTCTGGTCACAAGTGCCGATGTTCG 1011866 31 100.0 35 ............................... TAACAAGGACCTGGGAATCAATCGGGAGAACCGTG 1011932 31 100.0 34 ............................... AATAATACTCTAAAAAGGCCGTAATATATTCGTG 1011997 31 100.0 35 ............................... AAGTTTGCAGTTGTCCACTGATAATCACCAACTGG 1012063 31 100.0 35 ............................... TCTGGTGCGGTCTCGCACTAGATTGCTTTTTGGCG 1012129 31 100.0 34 ............................... TATTATCAAGAAGAAAGGAAGTGCAACAGATGAG 1012194 31 100.0 34 ............................... ATCACGATTCGGGGTGAATCCGAAGTGTATCCGG 1012259 31 100.0 35 ............................... CGTAGGTGTCCGGGGTAAAATTGCGGTCAAAGAAG 1012325 31 100.0 35 ............................... TGCGTTGGCAATAGATGCGTCTAATTCTGACTTCG 1012391 31 100.0 36 ............................... CAATTTGATGTGCCATCCCAGTCTCAAACCACATGG 1012458 31 100.0 35 ............................... AAAAGGAAGTATGGAATAGAGAAACTGATGAAATG 1012524 31 100.0 35 ............................... TGATACGTCTGTAGCCTTTACTGTGACGCTTTTAG 1012590 31 100.0 36 ............................... ATTTTCCTGTTTACAATGCGGCAATGCCGTAGTATG 1012657 31 100.0 37 ............................... CCAGACAAATGTAACAAAACTGTTAATTAAATCTCCG 1012725 31 100.0 35 ............................... TTTGGCAAGAGCCATTTTTTTATTAGATTCATACG 1012791 31 100.0 36 ............................... CATCAATCAAAGAAAAATCCTGCGTTTTGGCAGAGG 1012858 31 100.0 35 ............................... CCATGACCTAACCGTTACTTTATCTCCTACTTTTG 1012924 31 100.0 35 ............................... GCACTTCATCTTCCAACTGTTTGAGACGGTAATCG 1012990 31 100.0 36 ............................... TGAAACGCTTTTACGCTTGTTGCCACTGCCGCACTG 1013057 31 100.0 34 ............................... CTGTTACGATATCCATAAACACGTTGCCTAGAAG 1013122 31 100.0 36 ............................... CAGAAGGGTTTGAGGTTGATGAAAATGCGGCTGGTG 1013189 31 100.0 37 ............................... TCAAATTGGTTGTACGGCTCCATACATTGAGCCTTTG 1013257 31 100.0 37 ............................... GGAAGCAATGGACACGTGGAAAGCAACCATTTCGTCG 1013325 31 100.0 35 ............................... CTGTGACCATAATAATGCCATCATTCTTTTCCCGG 1013391 31 100.0 37 ............................... AAATTGCCCAGGGCCAGCCACCAAAAGGAAACCGCCG 1013459 31 100.0 35 ............................... CAATTTTGCCAGAATCGTTAAAACAGGGGCCTGAG 1013525 31 100.0 36 ............................... CATCTGGGTTAATGCTTTCTTTCATCGGTCGTGGTG 1013592 31 100.0 36 ............................... AGAAATTAGTGAAAATGCTTTTCCATCATAGTATAG 1013659 31 100.0 34 ............................... GTTCCGGTCAACCAAAACCTTTTTCGCGTCCTCG 1013724 31 100.0 36 ............................... TTTGTGATAGTAGCATACAATAGGCATGGTATAACG 1013791 31 100.0 35 ............................... GATAATATTTACGTGTCATTTTCTGGCGGTAAGGG 1013857 31 100.0 37 ............................... TGCGCTTACATCATACCCAGATGCCAGTGCAAGTCGG 1013925 31 100.0 35 ............................... CGAGCGGATGTGGTCTTTTAATTTCTTGGCCTGTG 1013991 31 100.0 35 ............................... CAATGGCAGCGGTAGCAACAATCCCCTTGACAGCG 1014057 31 100.0 37 ............................... CGTCTGTGCCATTTAGTCGCGGAAATTCCACCCACCG 1014125 31 100.0 37 ............................... TAACATATATCCGTTATATCCTACTGGGATAATTCGG 1014193 31 100.0 36 ............................... CGTCAGTTAAGATGTTAAGCGCATCCTGTCCTGTTG 1014260 31 100.0 36 ............................... GCTTTGTTACAGCGTCAGATACAGTATTGTAAAACG 1014327 31 100.0 36 ............................... CCATGTTTCAGAAACTACGTTTGTATAGTTTCCAAG 1014394 31 100.0 36 ............................... CAATTGAAAAAACTTTACACCCTTATACGCGAAGCG 1014461 31 100.0 35 ............................... CAGTCAGACGTATCCAACAGGCAGGATATCGGATG 1014527 31 100.0 35 ............................... TATTGATATCGTAATTGGCTCATATCGCTTATTAG 1014593 31 100.0 34 ............................... TTTTTGTTATCGTCGTTTAGCTGGGTGAATACAG 1014658 31 100.0 34 ............................... TTAAAGCCCTTATTGACTCTGCTATATCACCACG 1014723 31 100.0 35 ............................... ATTGATACGGTTGTGCAAAACTACCCTAAATTTTG 1014789 31 100.0 36 ............................... ATCTTGTCCCTCCCCTTTTATAATAATTCGTTTCTG 1014856 31 100.0 35 ............................... TGAAAGGCGGCACCCTAAAGCGTATCGTTGTCCCG 1014922 31 100.0 37 ............................... GGAAATATTACAAGCTACCCTTGGAAAGAAAAGGATG 1014990 31 100.0 35 ............................... AGGATTGCAAGCAGTAATATCCGGCAAGGGATTAG 1015056 31 100.0 36 ............................... ATTTGATGGCATGGCTGAAAAGCAGGAGGTGCTTTG 1015123 31 100.0 36 ............................... TGGATATTATCGCCTGAAACGCTGTGAGATACGGAG 1015190 31 100.0 36 ............................... AAATCTGGAATTATTTTAAAAAGCAGGGTAGTGATG 1015257 31 100.0 36 ............................... AATCGTGTGCCGCAGGACTATCCAACACCATGGAAG 1015324 31 100.0 36 ............................... GATTGTCACGTCTGACGTATCTGCCAATTCATAGAG 1015391 31 100.0 36 ............................... TGATGTATTCTGGCAGTTCCAAAGCCCTCAACCTCG 1015458 31 100.0 34 ............................... AAAAAATGAATGTCGAAAAATGGACTGATACTCG 1015523 31 100.0 36 ............................... CATATATGTCAACCCTCTGTTTTAACGATGCGTGCG 1015590 31 100.0 34 ............................... GTCAACAACTAGAAAACACCTTTTTGCATTCGCG 1015655 31 100.0 35 ............................... GAGCCGGTTGAAAAATTGCTATCCGCCAAAGAAGG 1015721 31 100.0 35 ............................... CTGATTGCATAGAGAAAAAACCGCATGAATTAACG 1015787 31 100.0 35 ............................... CTTGTAATCCACTTCTTTCCGCAATAATCATACCG 1015853 31 100.0 36 ............................... AGAGAAATAAAATAAAAAAAATTAAAAAAGTTGTTG 1015920 31 90.3 0 ...............TG.T............ | ========== ====== ====== ====== =============================== ====================================== ================== 119 31 99.9 36 TCGCACCCCAAGTGGGTGCGTGGATTGAAAT # Left flank : GATATATTCGAGGCGACGTAGATCAGTATCCCCCATTTTTCTGGAAGTAGAGGTTGAAATGTACATATTAATAACATATGATATTAATGTCACATCGACAAGCGGTCAGAGTAGGCTCCGTAGGGTGGCTAAAATATGTGAGAACTATGGTCAGCGAGTACAGAATTCTGTTTTCGAATGCAGGTTAAATGAGGCTGAATTATTAAAAGTGAAGAAACAATTATTGGAAGTGATCAATATGGATATGGACAGCCTCCGATTTTATAGACTTGGAGATAATTACGACAAGAAAGTTCAGCATATGGGTGCAAAGAAAACGTATAAATTCGACGATGCATTCATTGTTTAGACAGTGCGAACCATAAGTGATCATAAAAACACAAGGAGGTTCGCACCAAAAAAACTAATAATTAAAATATAGATATATGCAGTTGCATAAAAATGCAGTGGTAAAATCTATATGTTGTTATATGCTGTGAAAAAAACACATCATATAGCCG # Right flank : TTGCAAATCAATATTTATGGCTGTTATTTTTTGGATCACCACCTCCGCACTGATATAGGTTAAAAATTAAGCAGATGACGGGACTCGGACCCGTCACCTGCCTCATGATGGTGTGAATTAAAATGGTCAGCTATTCAGCATCAAATTTCGGTATGTCAATCACGACCCCGCCTTGCATTGCTGATTCATGTGCACATATGCCTGTTCCGGTCCAATATGCCCCCATGATGTCATCAATTGCCGGCTTCCGGTTCTCAAGGATAGAGCGTACAAAGTCATGTACCAGGTGTGGATGTGAGCCCCCATGTCCGCCGCCTTGCTTAAAGGATAGATGGGTATTATCATTGTTATACACCGTATTGGTTGTGAAAGGTGCTATCTCTTCGGGAAGCAGATATGCATAATCTGGTATATGTATGCGTTCCTCCAGTATTTCTCCGCCTCGGTCAGATTTCTCGTTTTCATCGGTTATGATGTCCACTTTTTGTAAAGATCCGGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCAAGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //