Array 1 4975-5331 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUUZ01000276.1 Bacillus thuringiensis strain AFS088016 AFS088016_98_C4_Contig276_140514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 4975 30 100.0 35 .............................. GGGACACTTTTCCATAATTCCAATATTCCATGAAA 5040 30 100.0 35 .............................. AATGAGGTCAAACGGTGTCATTCACGGACATTTTC 5105 30 100.0 36 .............................. TCATGAGTTCGATAAACTTTTTAGCTCCGTCTCGGA 5171 30 86.7 36 .G.G..T.....................G. ATGTATAAAATCTTTGCTCCAAAGAATGTTGACCAT 5237 30 96.7 35 ..........G................... TTTAGCATGGACGGACTATATTTGTTTTTTAATGT 5302 29 83.3 0 ....-....C.TA...T............. | T [5313] ========== ====== ====== ====== ============================== ==================================== ================== 6 30 94.4 36 GTTTAACACTAACATAAGATGTATTTAAAT # Left flank : AGTCAACGATGTAGTCAATGCGGATATATTTGTAAAGAAAATCGTTGTACACAAGCTATGTTTGAATGTAAGCAGTGTGGATATAAAACACATGCTGATTATAATGCGGCGAAAAACATTTCCACTTATGACATCGAAAATATTATAAATAAACAATTAGCGGTACAAAGCAAATTGCATTCAAAAAAATGTATGGAAGAGTATATAGAAGAGTTAGGATACCTGGATTAATGTAGATAATTGAGTCCATATTAAATAATTTGGTGGATTTACACGCCATAAATGGAGAAGTAGCACATAAGAAATTTACCAAGTGCCAACACTCCGTAAGGTAGTATCAAATGTAAATAAACATTGATGCGTGGGCATTTTCATGCTCTGAAGGGTGTAACACAAAAACCGTTACACAATACATCTATTTGCTGGTAAAATAATGTTTAATATTCATCTTATCAGGTTTTTTCCATATTTGTTAAAGTATCTATCTGTATTTCATCGGG # Right flank : GTTACGGTTACTAATTGTTCAGCACTCAAACGATAAGAAAGTGAATTTTATCAATACGAATTTTTTCTTTTACATATTAAAATGGAAGGCCCATTTCAATGTATACTGAACCCTTCACAAATCGTGAAGGGATTTTTTTATTCAATAAACGAGTTTTACAAAAGATACAAAATGTTAAACT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACACTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 376-869 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUUZ01000145.1 Bacillus thuringiensis strain AFS088016 AFS088016_98_C4_Contig145_140514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 376 32 100.0 33 ................................ ATAACTTCAGCAACTCCTTACCAAAGCTTACAA 441 32 100.0 35 ................................ TTTCCTTAATTGTTTTACCCTATCCCCACGCATAA 508 32 100.0 33 ................................ TATATAGAACTATTCCGATGTCTATCAAAGATC 573 32 100.0 34 ................................ TTCATAGAACTTGAACTCTCAAAAAACTGGAGAA 639 32 100.0 34 ................................ ATAACTAGGAAGTAATATAAAGCAACCCCAACAC 705 32 100.0 34 ................................ TTTTAAAGCCAGCCTTCCAACCCCAAAAGTTAGG 771 32 100.0 35 ................................ AAACTGTTGAGGAGCATTTATTAGGGGTAAAAGAA 838 32 87.5 0 ...A......A..A.....T............ | ========== ====== ====== ====== ================================ =================================== ================== 8 32 98.4 34 GTCGCACCTCTTGTAGGTGCGTGGATTGAAAT # Left flank : GGAAGCTGAGTAGTTACGAATAAACTTGATAAGTGGATTGAAAGACAAGAGGTAGTTAATTTATTGTAAATTATGACTTAATATATATAAAGGCTATTGTGGAACTATACACTTTTGTTTATCAGTTAGGTAATAGCTATAAAAATAAGGTCGCACATATTGATGTAAAAGAATAAATTGATTAAGAAAATCCTTTAATTTTTTAGGTGCGAATGTATAGTAAACATGAAATTCCTAGTACATTCGCACCTGGAATTCTCATAATTTATGATTGGAATTTATGATTTTTATACAAATTACTTTATAAAATAAAAATATTTGTATACTTTTGAATAGAATTAACGTATTTGTGTGTAATTTTGAACGCAAATCGGAG # Right flank : TAGCACCCTTACTCAATTGAGTCCAAAAAGCACTGTCGCACTTCTAGTAAGTGCGACTAACATCACAAGATTGAGGAAGAAGGTTTTTTTAAGTAATGCTTTAGCTTCAAAATAGTCTTCAGCTTATTAGATACTCAACTGGAAGTATCTATATCTGCAGTATCTAACACACATGTTAAAAATATAAATTGGAGGGAGATTGAATGACCTACATTGCTCATATCCGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCGGGCATGCTCCATGATTTAGGTAAATATACCAATGAGTTTAGAGAGTACATATTGGAAGCAGTAAATAACCCTAATTCTTCATCTAAAAGAGGGAGTGTTGATCATTCAACTGCAGGTGGAAAATTATTATATCAATTATTCCATACAGAAAATATCATTCCTTAT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 9313-10346 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUUZ01000145.1 Bacillus thuringiensis strain AFS088016 AFS088016_98_C4_Contig145_140514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================================================================================================================ ================== 9313 32 100.0 33 ................................ ACTTCTAAAAACCTGTGTCAATCGAACTGTATT 9378 32 100.0 35 ................................ AATGAAGTAAACGTTATAAACGGAAATAACAATAA 9445 32 100.0 34 ................................ TCAACAATTGTCTGATAACTGCACGACTGAATTT 9511 32 100.0 34 ................................ TTACAAAACGAATCTATCATTTGCTACAAGAAAA 9577 32 100.0 34 ................................ CAAACAGAAGCATAACAACAAATAAAAAACTAAA 9643 32 93.8 35 T..................A............ TGATTATAGCAAAAAAAGGGGACAGAATATAAGAA 9710 32 81.2 34 .C..T......AG......T.....A...... ATTGCTCATTCATCAAAAGTTTTCAAAATTACTT 9776 31 87.5 32 T...-................A.A........ CCATAGTGATCATAGTTGTGGGTTGTGAATTT 9839 32 87.5 35 ..G.........T.G......A.......... TCTTTGCAGGTTTGGGAAAAAGGAGAAGTATTAAT A,A,T [9841,9847,9851] 9909 32 81.2 34 .........T.CGA.....T......C..... ATATAAATATTTCATCCATACCGGATTATCTTCA 9975 32 71.9 176 A.TA..T.C.....T.....AA.....A.... CTTAGTAGGTGAGAACGTATAGCACACATGAAATGTCTCGTACATTCGCACCTGAATTTTCATAATTTATGAGTGAAATTTATGATTTTCTATACAAATTTTTTTATCAAATAAAGAAATTGTATATTTTTGAACAGAATTAACGTAATTTTGTATGATTTTGAACAAAAATCGGT 10183 32 87.5 33 ......T..T.C..G................. CACTTATCTTTTTAAATTCTCCTTATAATATTT 10248 32 93.8 35 ................T......A........ CGCTAGTGCTAAACGTCTAAAGGAATTGTATGGGC 10315 32 81.2 0 ...A.......AG......TT..........G | ========== ====== ====== ====== ================================ ================================================================================================================================================================================ ================== 14 32 90.4 45 GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Left flank : AGATGAGTATCCACCATTTTTATGGAAGTAGGTGTAACATTTGCTAGTATTAATTACGTATGATGTAAGCACTGTTGGCGGTGCAGGACAAAAAAGACTGCGGAAAGTTTCAAAAGCATGTCAAAATTATGGTCAACGAGTCCAAAACTCAGTGTTTGAATGTGTTGTTGATGCAGCTCAACTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGACGAAGATAAGGATAGTCTCAGATTTTATCAGTTAGGTAATAACTATAAAAATAAGGTTGAACATATTGGTGTAAAAGAATCAATAGATTTAGAACGTCCTTTAATTTTTTAGGTGCGAACGTATAGCACACATGAAATTCCTTGTACATTCGCACCTGAATTTTCATAATTTATGAGTAAAGTTTATGATTTTCTATGCAAGTTTCTTTATCTAATAAAAAAACTTGCATATTTTTGAACAGAATTAACGTATTTGTGTAGGATTTTGAACACAAATCGGA # Right flank : GTGGTAAGACACTTGATAGTATTTTATTAAGCCTTAACGCATTACCCAAATACCTTTTGACTAACGTCCTTCACAATCTTGAGGAAGAAGGATTCTTTTGGTAATGCGTTAACTTTAATTAAAACTTCTTGAAATATATAACGATATTATATAATATATAGGTATATTGTTAGTTTAATTGATTCCGTTTATTCCCACACCTTTTTGTGTTGTGGTTGAGTTGTAGAAGCAAGTTGCGTCTTGTTTCAATTGTGAAAGGGCTTCTTTGAGCCGATTAGTGTATATAGCTTATTTTGCTATGCACATTATTAATCGACTTGAAGAAGCCCTTTTTGTGTTGTTTTCAAGTTTGTAGGCAGGGTTATTTATGATTCATAACATAACAAAGTAGATAGTAGAGGAGATAGTAAAATGAAAAAAGATTGTAGACACTTAAGACTAGTACCAACAGTAGAGGAACATAAAACACGAATGGAAAAAAATCAGAAGCCAAATGCTGC # Questionable array : NO Score: 7.27 # Score Detail : 1:0, 2:3, 3:3, 4:0.52, 5:0, 6:0.25, 7:-1.06, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.40,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-33] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //