Array 1 458473-459539 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026977.1 Pectobacterium parmentieri strain IFB5408 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 458473 29 100.0 32 ............................. CGCTCGGCAGCAGCAGGCTCTATATGCTGGAC 458534 29 100.0 32 ............................. GCGCATCGCAAGGTCGAAGTCTGATTTAGTGT 458595 29 100.0 32 ............................. CAGTTGGGCCTCAAGTCTGGAGGGGATGAATC 458656 29 100.0 32 ............................. GACATGGAGAACATCAAGAACCTTGTTTGGAT 458717 29 100.0 32 ............................. AGACTGCTTAACTCTGCTGCCGTCTGGCGCTG 458778 29 100.0 32 ............................. AGCGGCACCGATTTGCCCTGACATTGACGTGT 458839 29 100.0 32 ............................. GTTCGTGGATCATTCGCCACTGGTGGATACCT 458900 29 100.0 32 ............................. ATCGCAAATAAGCCCAATAGGTCGATTCATTG 458961 29 100.0 32 ............................. AAATCGTTATCAGGGACGCCCATGTTTACGGA 459022 29 96.6 32 ............................T GGTTTAATGGCGAATCGGTGCCAAGAAAGGAG 459083 29 100.0 32 ............................. GCTGCAACTGAGTTTGCAGATCAAAGAAACTT 459144 29 100.0 32 ............................. CCTCCGAAGAGGCTATTCATCTGGTTTTAATT 459205 29 100.0 32 ............................. TCGTATGTATCGATCGCTGATAACAACACGTC 459266 29 100.0 32 ............................. GGGGCTGGTGTGTTTGGAGAGGCGGGGCCAGA 459327 29 100.0 32 ............................. GTTAGATAGCTCTCTCGTAACGGAGGTGATCG 459388 29 100.0 33 ............................. TGCTAATTTGTAACCTTCCGGTATTACCGGAGA 459450 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 459511 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCGGGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATGCTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGTGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 461409-462108 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026977.1 Pectobacterium parmentieri strain IFB5408 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 461409 29 100.0 32 ............................. CCCTCTCCGGAGGGTTTTTTTACGTCTGGAGA 461470 29 100.0 32 ............................. GAAATCAGAGCCCTTGGTGGAGATGGGAGCGC 461531 29 100.0 32 ............................. CAGGTTCGCGGTTTGCAAGAATACGTCCGCGA 461592 29 100.0 32 ............................. CGCGATCCTGCCGTTCAGGTAATGTCCTACCG 461653 29 100.0 32 ............................. GGCGCTAGACTGGCTAAGACTGGATTCATCAA 461714 29 100.0 32 ............................. GTTTTTTTGATCTCTCGGAATCTACCAATGCA 461775 29 100.0 32 ............................. TCCTGTTGAGTTAACGCTATGGATTTAACTGA 461836 29 100.0 32 ............................. GAACATCATCCAACCATATTTTTTGGCGATAT 461897 29 100.0 32 ............................. CATGAAAGACAGATACCGTGATTTATCTAGAA 461958 29 100.0 32 ............................. GGCGGAAAAGCCGCATTGCCGTGGCAAGTTGC 462019 29 100.0 32 ............................. TTATTGAATGTTGTGATTGCCGGAATCAGATC 462080 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTATCCCGAATTCTAAATGGTGAGCGTACACTAACGGTTGATCACATGAGCGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTGTTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTCATGTAATAAAGACTGCCGTGCTGGAGTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGGTCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTTTTATAAAACAAACCTCTACTTTTAGA # Right flank : GTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCATGCGGACAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCCAATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3942194-3944256 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026977.1 Pectobacterium parmentieri strain IFB5408 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3942194 28 100.0 33 ............................ CGCAGGAAGAATCTTTTATAACATAAACAGAAT 3942255 28 100.0 32 ............................ TTAACTTCATCGAGCACGCCCAGCAGTTTAGC 3942315 28 100.0 32 ............................ CTAAGCACGGCTATTAATTGCCTTATTCCAAT 3942375 28 100.0 32 ............................ TCTGAAACGCTAAACGGCGTAACGTGCACTAA 3942435 28 100.0 32 ............................ TTAGCGACTGCAACGCTAATTAATAATAGGAT 3942495 28 100.0 32 ............................ GTTAACAGTAAATTCACCGTCACGGTAATAGT 3942555 28 100.0 32 ............................ TTCCACGTGACCCAATATAGAACTATCAGAGT 3942615 28 100.0 32 ............................ TATGCTAACGGCGCTCGTACTCTCTTGGATTT 3942675 28 100.0 32 ............................ AGTGCTGGATGACGTCACGCTCGACGTTATTC 3942735 28 100.0 32 ............................ GTATATGATGACCATAAAGGCGTGTTAGAAGT 3942795 28 100.0 32 ............................ ACGGGTCGTATGCAAATTCGTTAAGTGAGTCG 3942855 28 100.0 32 ............................ GACATGCAAACCCGTCAGCGTGAAGTTGCTGC 3942915 28 100.0 32 ............................ ACCGTTTCCCAGGCTGTTATGCAGTTAATTAA 3942975 28 100.0 32 ............................ ATAACGGCATGTGCCAGATCAACGGCATCTGA 3943035 28 100.0 32 ............................ TTGGGCAATGGGCAGTGCGCCCGTTGCTCGTC 3943095 28 100.0 25 ............................ TAGCGCCCCGCTGCCTGCACTAAAG Deletion [3943148] 3943148 28 100.0 32 ............................ GCTCATCACTGCGCCGTGTGCGTGTTTATCAA 3943208 28 100.0 32 ............................ ATCACCCTCTACCGCCGCCGCGACACGCACCA 3943268 28 100.0 32 ............................ GTTTATCTCGACGGGCATTGTATCCTTTGTAT 3943328 28 100.0 32 ............................ TCTTACGCGTGAGGCATACATTGATATCCTAT 3943388 28 100.0 32 ............................ ACAGTCTAGTACTGACCTCTCCGGTTGAAATG 3943448 28 100.0 32 ............................ CTCTTTCGACCACACTGAATACGCCAGCGATG 3943508 28 100.0 32 ............................ GGCTGCGTTCTCCGATACCAGATGACCTGAAT 3943568 28 100.0 32 ............................ AAGGTGCGAAAGCCACAGCGTCATGAAACCAA 3943628 28 100.0 32 ............................ TTTTGAGGCCAATCACATTCTGAAGCTTAAAT 3943688 28 100.0 32 ............................ AGCGCAGAACCACCCACGCTAACCCGCGAATC 3943748 28 100.0 32 ............................ ATAAATTACGCCGGTTTGAGTCCTGACAAAAA 3943808 28 100.0 32 ............................ ACGGATGACCGAGTGACCGGCGACGAATACCA 3943868 28 100.0 32 ............................ GAGAGCGGAACGATGTGATCCACCGCCCTGTC 3943928 28 100.0 32 ............................ AGTCGGCTCAATTGGCACCAGCGCCCAACCTT 3943988 28 100.0 32 ............................ TTGCCTACATACCATAAATTACGTCTAGCTGA 3944048 28 100.0 32 ............................ CGGTAAGCAGATAAAAATTTATGGCGGAAAGG 3944108 28 100.0 32 ............................ GCAATGCGTGGGGCGGCATGGTATTGAAAGAA 3944168 28 100.0 32 ............................ GGGCGCGCTGTCATGCTGCGCATCGAGCCAGC 3944228 28 85.7 0 A...........GC..........A... | G [3944253] ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCCAGTGCGGAGCAAAACCGTTACCCAAAAAACGCGCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : ACAAAACGTTTCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAACCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3961472-3963065 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026977.1 Pectobacterium parmentieri strain IFB5408 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3961472 28 100.0 32 ............................ AGCTAAACGCGGCGGTGTACTCCGCTATCGAA 3961532 28 100.0 32 ............................ CTGTATAAACATACATACCCCTAAAAGCTCCT 3961592 28 100.0 33 ............................ CACTGCAAATTATCCGCTTTCAGGTTTCGCAGG 3961653 28 100.0 32 ............................ GCGTTTAGCTGGTGGAACAATTTAGCGTTAGC 3961713 28 100.0 32 ............................ TCATTCAACGTGCTTGACTATGCCCTGCGTGT 3961773 28 100.0 33 ............................ TAGAGGAAGATTCTAGCCTTTTAGATATCTTGG 3961834 28 100.0 32 ............................ AGCAGAAAGCAGGGCAAGCGGCAGAAACTCGT 3961894 28 100.0 32 ............................ TTCATACGCATCATTGAAGCTGTGCAGGGCAA 3961954 28 100.0 33 ............................ TAGATAATAGGGGCTTATTCTTTGTTGAGGTTA 3962015 28 100.0 32 ............................ TAAAGTCGGGCAATCTGTTTACGTGCCTTTCG 3962075 28 100.0 32 ............................ ATAGCAAAATCTAACGCCCGCGCATCCATAAA 3962135 28 100.0 33 ............................ CTACAGTAGTATCACTGTAGCAACCATCGCCCC 3962196 28 100.0 32 ............................ ATGATGACGAGGCAATTTTTCTTGCGCAGCTC 3962256 28 100.0 32 ............................ TGGGTAATGGTCGCTGTCACGGTCGCCTCCGT 3962316 28 100.0 32 ............................ CACAATTCCAATTCATCCATGATGTGCATGAT 3962376 28 100.0 33 ............................ TCATTATATAATCACTATCCGTGAATTTCATGT 3962437 28 100.0 32 ............................ ATGTAAGCGCTAACAATGTTATGGTGCGCTAT 3962497 28 100.0 32 ............................ GTTATCAATATTTATTCCGATGGCGCATTCAC 3962557 28 96.4 33 .............T.............. CGCCGCCCGATACTGACGTTGCGCCGCTTTCGT 3962618 28 96.4 32 .............T.............. GCTGATTAACGATAAGTGGATGGAATTTCTGA 3962678 28 96.4 32 .............T.............. GTGGAGGGCGGGTTTTACGGGTCGCTAATTGC 3962738 28 96.4 32 .............T.............. GTGCACCGAATGTGGCTGTCGTGAAACTCGGC 3962798 28 100.0 32 ............................ GTTAAATTCCAGCGTTTGGTATTGGGCAATCA 3962858 28 100.0 32 ............................ AGCCACCTCTGCCAGTTTTCCGTACAGCGTGA 3962918 28 96.4 32 ..C......................... AGAATGGAGCCAATCACGTTTCAGTACAATAT 3962978 28 100.0 32 ............................ AGATCACAGTGAACAGGAAAACGATATTCAGC 3963038 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTGTTGATGCCAGCGAAATTAATCGCAGACTAACTATTTAATAAATAAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATAGTTTGGGAAAATGATGGCTACAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACAG # Right flank : TTTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAGCTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGTGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //