Array 1 185156-184285 **** Predicted by CRISPRDetect 2.4 *** >NC_014960.1 Anaerolinea thermophila UNI-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 185155 36 100.0 44 .................................... ATTTCCAGCTTGAATTATTGTAACTATCGCCATACCTTGTAAAG 185075 36 100.0 41 .................................... TGCTAAAGCCAGGAAATTTTCGTCATACAGATAAATATTAT 184998 36 100.0 49 .................................... AATGTAAGACGGGCTATATGGCGGGTCTACAAGTTCTGCAACTTGTGAC 184913 36 100.0 38 .................................... TCGGCGACGAGGACGGCTTCCTGCTTGTAGTGCTCACG 184839 36 100.0 36 .................................... AGGATTTTTTCCTCACCCGTGCGGATCACTCGAAAG 184767 36 100.0 40 .................................... ATAATTGTGACCATATGAATTTATCCTTCCTTTCTTTGAA 184691 36 100.0 40 .................................... TACCACAGGAATCCCGTTTACGTTTCCTACAATTTCCTGG 184615 36 100.0 38 .................................... TCGTCCGGAAGCGGAAGACTCGCTAGTTGACAGACCGC 184541 36 100.0 38 .................................... GGCGCTTGTCGAAGAACTCGACCTTCGCCCCGACTAAG 184467 36 100.0 35 .................................... GATTACAAGAGCAATAATAGTAAACATTTTCTTAT 184396 36 100.0 40 .................................... CCATGTTCAGAAGTTTTGGGTTGTTAACCCCAACTTTTAT 184320 36 88.9 0 ...............................GCTC. | ========== ====== ====== ====== ==================================== ================================================= ================== 12 36 99.1 40 GTCAGAATCTAAGAAGCCCCGGAAGGGGATTAAGAC # Left flank : CTGAAGCACGAGCAGAGCGTCACCGCGCGCATCAACCTGCTGTACAGCATCGCCGTGGAGGATAAGGACTACGCCAGTCAGGAATTTCTCAACTGGTTTGTGAAGGAACAGGTGGAAGAAGAGAAGAACGCCGCCCAGGTGCTGGAGTGGCTGAAGATGGCGGGCGGCGCGGTGCCGGCCCTCTTCCAGATCAACGCCCTGCTTGCCCAGCGCGGGGATTAAGCGCCCATCCCGCCCGCCGAGCCCCGGTTGGCGAGCCTGCCGAGCCATGCCGAAGCCGAGCCGGACGGACTTTCGCGTACCCCCCCTTAAAAAATGCCCATTTTTGACCCCAAACCGAGGGGGGGTACGCAAAATTCGGGCAGGTGGATTTTGCAGGCAGTGTGGTGTGAAAAATGCTCAAAAAACGGCTTGATTTTTGCCAAAGGTTGTGCTATGCTGGAAGCAGTTCTGAACTACGCGGCTTCCTTCCGGCGGTGAAGTGGAAGGGCAAAAGTGCA # Right flank : CTCACCCCCTGCCCCTCTCCCTTTTGGGAGAGGGGGTTTTGTGCGCCGTGCCCCTCGGCGTTGCTCGGGGTGCGCAAGCCGTAATACACGGTTTCTTTTTTGCGTCTTCGCGCCTTTGCGGTAACATCATCCTTCCTGCGCCCGCGACCCGGACATGTTTTCCACCGCCAGGGCTGAAAAACCCTTTCATTTTCAGGGCATTTGTTCTATACTCGGGGGTTGAAACCGACAGAGGGTCATCTTCACGACAAATCATGGAGGAACAGGATGATTCGACTTGGCTGGCTGAAACACCGCAACATTCCCTTTGAAGTCCCCGCTGAACCCCTGATGTACATGCTGGCTGTTGGCTACGTGGGCGAATCGCAGAATGCGTCCGCGTTTTTCAGGTGGTTTTACAACAAGGTGGCAGAGGATGACCGCCGCCTGGTGGTATACCATGAGAATAAATCCAGCGCGGTCAAAGGGGATTGGGACTGGGCGTACCAGCACCCCACGTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAATCTAAGAAGCCCCGGAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 762021-757015 **** Predicted by CRISPRDetect 2.4 *** >NC_014960.1 Anaerolinea thermophila UNI-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 762020 37 100.0 35 ..................................... TGCTTCTTCATGGCGGACCACAAACGGGGTGAGAC 761948 37 100.0 36 ..................................... CACGGGTGATGGATCGGAAGGTTACCCGCTGGACTT 761875 37 100.0 36 ..................................... CACCGTCCAACAACCCGCGCACGTATTGAGAAATTG 761802 37 100.0 35 ..................................... AATGTGTAGCGCAATCCGCGCACACCTACAGTGAT 761730 37 100.0 37 ..................................... ACCGGTCCCAGCGTGTACAGCAGGGAGCGCTCGGCAT 761656 37 100.0 35 ..................................... AGCGTTAGGCTTTAATAGCATCTTCAAAGTCCGGG 761584 37 100.0 37 ..................................... CGGAGTTACCGGCAACCACAACGTTGCCAGGTCTCGG 761510 37 100.0 35 ..................................... TTCGTTCTCTGGTAATGGCGCGCCTGATTTTTTCT 761438 37 100.0 35 ..................................... GCAATCCATCCACGTTTTCCACCACCACCCACGTC 761366 37 100.0 35 ..................................... TTGTTACAATTTCACCATCCAGTTGCACCGGAGTG 761294 37 100.0 35 ..................................... CTAGTGGATAGAGTGGGATGCAATGTTAGTGGATA 761222 37 100.0 36 ..................................... TTCCGTGAGAATGTCTCGCTGGAAACTGGCACTAAC 761149 37 100.0 38 ..................................... ATTGCTAGTAGTCGCTTTCAAGTAGCCAATCCCAACCA 761074 37 100.0 37 ..................................... CGTGAGTATAGTCTGCTTTGAGTATGGATTCAACGTC 761000 37 100.0 35 ..................................... TCTTCGGAGCGGGTCGGGTCTTCGGCGCGCCAGTT 760928 37 100.0 38 ..................................... AGATCAGCCAGGGCGGTGGATTTTCGCCCCACACAGCC 760853 37 100.0 36 ..................................... AGTAAGTAATTTTGAGCATTGCTCCGACATGCTCGG 760780 37 100.0 36 ..................................... CCCAGGAGTGGCATGACATCATGAGCGAGGCAGGTT 760707 37 100.0 36 ..................................... GCTGGGCGGGCGAACATCCTTGGCTGCGCGCTACCC 760634 37 100.0 35 ..................................... TTGTCGTAAGCCTGTTGAACGCGCTCGACAAATCG 760562 37 100.0 38 ..................................... CCTGGGTCGGTTTGACTTCTTCAGCCATTTTTCTCACT 760487 37 100.0 35 ..................................... TCGGGAGCGCGGGGTGAATATTGACTAATTCCGCC 760415 37 100.0 35 ..................................... CGATTTTGCTTGCTCCCACTTTGGGAGCATGGGCA 760343 37 100.0 38 ..................................... ATGCCTTTGTCGGATGGCAGTTGTGGCGCAATCCGGAA 760268 37 100.0 35 ..................................... CAAATTGAACCTGGTGTGTCATTGTTTGAGAAGTT 760196 37 100.0 36 ..................................... GTCTGGTGCGATTATCGCGGGATTGGACCTGTACGC 760123 37 100.0 36 ..................................... AAATTCCCAAAATTCCCAAATTCCCAAATTCCCAAA 760050 37 100.0 36 ..................................... TCCGTTGGTGCGAATGCTCTCCATGATCTCATGGAG 759977 37 100.0 35 ..................................... CTTGGTGTTACCATCACCGACCAAAAAAGCCAAAC 759905 37 100.0 36 ..................................... CCTAAATTTGTAGGATAGTAAAGAGGATTGCCCTTA 759832 37 100.0 37 ..................................... GTAAGTCCGACGCAGGCAGGATTTCTTGGGTACGGTA 759758 37 100.0 36 ..................................... GCTTTTTTCAATGCAGGAAAATTTATAGCGTAATCA 759685 37 100.0 35 ..................................... ATAACCCGCAAATACTCTGGATAAGTCATGTTGTA 759613 37 100.0 35 ..................................... TTTGATGAAGATATGTCTTTTATCACCTCCTAAAA 759541 37 100.0 34 ..................................... TCGAAACGGGTTGATAATTCTGTTATCTTTCGTT 759470 37 100.0 36 ..................................... ACTCAGCGACTTGCGTCGCTGAGAGGGACTTTACAA 759397 37 100.0 35 ..................................... ACAAAAACGTTTATTTTTGAAACAGTGTTTATTTT 759325 37 100.0 36 ..................................... CTCGACAAACGCCTTGATGAAGTCACCCGCCGATGA 759252 37 100.0 37 ..................................... CCACGCTTGCACCGCGACCAGCCTTGCTTTGGTAGTA 759178 37 100.0 37 ..................................... ACGAATAACGATTCAGTTTTTCAACCTTCTGAAAAAC 759104 37 100.0 35 ..................................... TCGTCTTTTGTTACAGTCTCGTTGATTTTTCCCTC 759032 37 100.0 35 ..................................... AATTGTGGTGGTCATGGAATCCTTATGGTGTTTGT 758960 37 100.0 36 ..................................... CACAACCAGCGCTCTGGCGTTCGGAAGCGCGTTTCA 758887 37 100.0 36 ..................................... CTCGACAAACGCCTTGATGAAGTCACCCGCCGATGA 758814 37 100.0 37 ..................................... AGGTGGCGCAAGAGAGAGCGGATCGCCGCCAGACGCA 758740 37 100.0 38 ..................................... TTCAGCCGCAAAAGCATAAGTACTTCCAGCAAGAATTT 758665 37 100.0 36 ..................................... ACCGAAGCGCAACTCTCGCTGGACGGCGGCTCAACG 758592 37 100.0 36 ..................................... GTCGTGCTGGTTCTCACCTTTGCACTGGTCAACTTT 758519 37 100.0 36 ..................................... AACCATTATCATTTACACTTTGGCATGCCTGGTTTA 758446 37 100.0 37 ..................................... ACGACTTGAACAAATCTTCTATTTCGTTTCTGCTGAT 758372 37 100.0 38 ..................................... TACGGCCACTCAAACGGGCATGCGGCACCAAACCCCCA 758297 37 100.0 36 ..................................... TTCGCCCTCGGCAACAAGGTACTTAAGCACTTGTGG 758224 37 100.0 35 ..................................... TCATACTGGACAATCAAGGGGTTTGAAATTACTCC 758152 37 100.0 36 ..................................... TAGTAAACCCGTGACTATCATAGACTCTCGCCATTC 758079 37 100.0 35 ..................................... GTGTGGCGCGTTGAAGAAGTCCTGCGCCTGTATTT 758007 37 100.0 36 ..................................... GTGTGGCGCGTTGAAGAAGTCCTGCGCCCGTATTTT 757934 37 100.0 38 ..................................... AAGAATGGCTGAAAACCGGCTAAAATAAGGACAGGTGC 757859 37 100.0 36 ..................................... CAGGTGCTCTGAGAAGCACCTGTGGGCGAGTGGATG 757786 37 100.0 37 ..................................... TGTAAAGATTCACGCGCCCGAAAATGGGTACTTCAAA 757712 37 100.0 37 ..................................... TGTAAAGATTCACGCGCCCGAAAATGGGTACTTCAAA 757638 37 100.0 36 ..................................... CTTTCGGGGCAGGCCACCCGCTGCCTCCCTAATAGG 757565 37 100.0 36 ..................................... AGAAGAAAACAATTCGTTCACGATTGAATACATTCT 757492 37 100.0 36 ..................................... CTATCCGGTAACGAATCGGGGGGATGCGGCTGCGGT 757419 37 100.0 38 ..................................... ATCGCTGGCGCGCTGTTTTTTATGCTGGTCATCACCGG 757344 37 100.0 36 ..................................... ATTTATCATGTACTGCAGGATAGGATGCTGTTCGTC 757271 37 100.0 36 ..................................... TTCGCGGTTAATCTCTTCGTGGAAAGTTACCAGGAT 757198 37 100.0 37 ..................................... CAAAACGCAATTTCAAGAATAAATGACGGTTCTTCGA 757124 37 97.3 36 ......................C.............. TTGCCATCCGTGTTGGCGCACCAGCGCACCCATCCC 757051 37 70.3 0 ......C.......A.G.....C.....GC.CCC.TT | ========== ====== ====== ====== ===================================== ====================================== ================== 69 37 99.5 36 GTTGCATCCCCCTCGATCCGTTAGTGGATACTGAAAC # Left flank : GACATCCACTGGTCGAGCGGATACTTTGGCTACTTCCCCACCTACGCGCTGGGCAACCTGGTTTCGGCGCAGTTGTGGGAGAAAATTAACAAGGATATCCCCGACTTGGAAGGGCAAATCGAAAAAGGCGAGTTCGGCGCCCTGCTGAGCTGGCTGAGAGAGAACGTGCACCGCTGGGGACGCCTGTACGAACCGCAGGACCTGGTGGAGAAGGTTACCGGCTCGCGCATCACCCCTCAGCCCTACCTGCGCTATCTGGAACGCAAGTACGGCGAGATTTACGGGCTGTAAACCAGGGAATTTGATGAAAGACCGGCTTCCGGTAAGGGGAGCCGGTCTTTTTTGCAGGTTTCCCCGGGATTTTCGCAAATCCCCCCGGTTTTTAAGCAAAAATCGATTTGCGAAAAAGAAAAAAGGGAAAACCGGAGCAAATCCCAGAAATAGGGTTAAGAGGGATTGTCTCCCCCCATAAGTAGTGTATAATGGGGGAAGAAAATGCG # Right flank : CGGGGGGCTGCGACTGAAACTCCCCACAACCGCGGTGGGCGAGCCTGCATCCCCATCCGTCCCGCCGGAAAATCTGCCCCCCCTTAAAAACCAACAACCCGGAGCGCGTCCGGGCTGTTGGGCCGTTTTCCTCTCGGGATTCTATTCAATCTTCACCGGTCCGCCCTCGGCAGCGCTCTGATAGAGCGCATCGAGGATTTGCATCACCCGCAGACCTTCCTCGCCGGTTGCCAGATGCGGTTTGCCCGTCACCAGACAGTCCACAAAATGGTAGTAGGACGAGGTCACCGGCGGATAAGGCGGGTGCAGTTTCATGTCGAAGTGCGCGCCGTCCTTTTCGAGGAAAATCTCCGCCTCGAAGCGGTAGCCCTCATCCAGGTTGCGCTGAACCAGACCGGCGCGGGTGCCATACAGGCGCGTCTCCATGAACTCGCTCTCTTTGATGTTTGCCGCCCACGAGGCTTCCACCATCAGCGTGGCGCCATTTTCAAAGCGAATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCCCCTCGATCCGTTAGTGGATACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 1384075-1369172 **** Predicted by CRISPRDetect 2.4 *** >NC_014960.1 Anaerolinea thermophila UNI-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 1384074 33 93.9 33 G...............................A GACGAAAGGATTGACATGCTTACCCTACCCACC 1384008 33 93.9 33 T...............................A AAGTTTGGGGAAATTACATTCCTGCCTCCCACG 1383942 33 97.0 31 ................................A CTTGAGACCATCTTGATGATTGATATACAAA 1383878 33 93.9 33 A...............................A AATGCTATACTACCCATAGCACCTTCCCAAACC 1383812 33 93.9 34 A...............................A AAAGCAGTACATACACACATAGCCACCCTCCCCT 1383745 33 93.9 33 T...............................A ATCTCTGTCTCCCCGCTCCGGCGGTTTCTCCGC 1383679 33 97.0 34 ................................A AGAAGATTCAGGTGTCATGACAAATCTCCAACGA 1383612 33 93.9 35 G...............................A AAGGTTCAAAAGGGACAAATTCATCGAACGATGAA 1383544 33 93.9 31 G...............................A GCGGTAGTCAATTGAATCTGGTTCTTCCGCA 1383480 33 93.9 35 A...............................A GTCCTGGAAACAGACCGTTGGCATCTGGAAGAGGG 1383412 33 93.9 34 T...............................A GAGTTTGGACAGGGTTTTGCGAGTATGAGCGCGC 1383345 33 97.0 35 ................................A GAGCAGTACAGGGACATGCCCAACGTATTGCCGAT 1383277 33 93.9 33 G...............................A ACACTGTCCCAGCCCAGGAGCGCGGCCAGCCGG 1383211 33 93.9 33 A...............................A GTAGTAATGCACCGCCAGCATCCTGATCGCCTG 1383145 33 97.0 34 ................................A GCAATACCGGTCGGCTGATTGCTGCTACCTGTAC 1383078 33 97.0 34 ................................A ATCCCGCGCTACACGGTCAAGATGTCGCGGAGGA 1383011 33 97.0 33 ................................A ATTGATCTGCGTTCGATGATTTTTTCGCTCATT 1382945 33 93.9 34 A...............................A AAATACCGGCGAGTTGCTGTACGGAATCGAGCTG 1382878 33 97.0 33 ................................A ACCGTTGACAGTCCTGAAGTCGTTGAGATGATT 1382812 33 93.9 34 G...............................A GCGGCTTTTTGGGATTACGTGAGCAACAAACAAT 1382745 33 93.9 33 T...............................A GTCCGTCAAGATTACATACGTCGCAGGGTATGG 1382679 33 93.9 33 T...............................A TCCCGCGCTACACGGTCAAGATGTCGCGGAGGA 1382613 33 100.0 34 ................................. GAAACGCCTAGCAGGCAATCCAGGACACCGTCCA 1382546 33 100.0 33 ................................. AGCCATGCGCGCTTTGATCTCCGGCGTCAGGAT 1382480 33 97.0 33 T................................ AAATCCTGACCCGCCAATTTGCCGGGAGTGGCG 1382414 33 97.0 35 A................................ CAAGTCTGTCAATCCCGCAATTGCATGTGCCAAAA 1382346 33 97.0 32 T................................ GTTGGCGATTGGTCGAACCTGGTGTACTCCAT 1382281 33 97.0 33 T................................ GCATACTGAGTAACAATGATGTGCAAGCAGCAA 1382215 33 97.0 35 T................................ GTTGTATGCAATGTCGGCCGCCACGCTGAATCGCG 1382147 33 97.0 32 T................................ CCAGCGCAGCCAGGCATACGAGCAAGCCATGA 1382082 33 97.0 33 A................................ GATTTCGCAAAAATATCTCTGTCCGTTCCATTG 1382016 33 97.0 33 T................................ TTGGCGGCACGTGGTCGCTGCTAGGAAACGTGA 1381950 33 100.0 32 ................................. CATCCAGCCGCGCAGGGGCGGGAGGGCTGTCT 1381885 33 100.0 32 ................................. TGCGCTCAATCATTAAGATGTGCCCATCATCA 1381820 33 100.0 34 ................................. AACACGTCCCGCGCATGGGCAATGGTCTGCGGAT 1381753 33 97.0 33 A................................ GAAACTTGCGCGTCTCCAAAAACTGAGCATCTT 1381687 33 100.0 34 ................................. TTGAAATCTTGAACGACGGCTGGGACATGATGAT 1381620 33 97.0 33 T................................ TTATCATGCTCTTCCAACTTCCGCCACGCGGCA 1381554 33 97.0 33 T................................ GTGAACCCAGATAGTATGTTTTTGAATCTTCGA 1381488 33 100.0 32 ................................. CAGGCGTGGTCTCGATTCCGATTTGCACCGTC 1381423 33 97.0 34 T................................ GAGGTGTGTTACTATGAAAACGACGTAGATACCC 1381356 33 97.0 34 T................................ GGCGGGCGGCGTGGTGGGACACGCATTGTCGGCA 1381289 33 97.0 33 G................................ TTCTCCCCCGCGTCCCGGAGCGATGCGCCCTTT 1381223 33 97.0 34 G................................ GACCCGCAGTTACACAGCCCCGACCAGCGGCGCA 1381156 33 100.0 32 ................................. GCAAAATATCTCGCCCCAGAAACGGCAAGGTG 1381091 33 97.0 33 A................................ CCTCTTGGCGGGGGAAAGGCGGTGTACACTGGT 1381025 33 100.0 31 ................................. CCTCTTGGCGGGGGAAAGGCGGTGTACACTG 1380961 33 97.0 32 G................................ GTTGGTAAGCATGCCCGGCTTGCCGACATATA 1380896 33 100.0 34 ................................. GAACCTGACGTGGCTTACCTTGACGCATACCTTG 1380829 33 97.0 34 A................................ AGCGAGATAACTCAAGGTATGAGACGGGATGTCA 1380762 33 97.0 34 A................................ CCGCATCGGCATTTCGAAACGGGATGATTTCCGC 1380695 33 97.0 33 T................................ TGTTCTAGTGTTGGCTCAAAACCGGACTTGCGT 1380629 33 100.0 34 ................................. AGTCCCTGGGAGCAAAAGCCTAGCGCCCCCCTGG 1380562 33 97.0 35 G................................ CGAATTTGGCTGGGATACGGATGGCGAGGTGAGTG 1380494 33 97.0 34 T................................ CGTTTAACTGCTGATTGATGCGGTCGTTGACCAG 1380427 33 97.0 32 G................................ CCGAGATCTGGGCGCAAGATGTGCTTGCTGTG 1380362 33 100.0 35 ................................. AGTCCCTGGGAGCAAAAGCCTAGCGCCCCCCTGGG 1380294 33 97.0 33 G................................ ATCGACCGTGTAGGGCAGGTAATCAACGGCAAC 1380228 33 97.0 34 A................................ GCTTCCTCACCGGCCACTCAGTTGAAGAACTAAC 1380161 33 100.0 33 ................................. CGCCAACCTCGTCTATCTGTACCATCTCGGGAA 1380095 33 97.0 32 T................................ TGAACCACAACTCTGAAAGCAAGATTGCCCTG 1380030 33 97.0 30 T................................ AATAATGCAGAACCTTATTAACCGAAACAA 1379967 33 100.0 33 ................................. GAGCGTCAGTTGCGCATGAGTGACCCAGAGGGT 1379901 33 97.0 33 T................................ TGCAAATGGCAATGGCAATGGGAACGGCAACAA 1379835 33 97.0 33 A................................ AGCGCACTGCTACAGATGATGAAATCAAAAGTG 1379769 33 100.0 34 ................................. ACCGAGAGAAATCAACGGCAAATGGGTCAAAGTG 1379702 33 100.0 33 ................................. AAAAACGGAGGGTTGAAATGGAAACAAGCGAAC 1379636 33 97.0 33 T................................ ATGCTATTTTTAGCAAGGGCCGGATTACATGGG 1379570 33 97.0 32 A................................ AATAATGCAGAACCTTATTAACCGAAACAACA 1379505 33 97.0 32 A................................ CGGTGGATGCAAAAAGCGCATTTCTCATGGGT 1379440 33 97.0 34 T................................ CCCGATGCCGCGGTAACCATGCTTGATACCGGCG 1379373 33 97.0 35 A................................ GGCGGTAATATCCGGTGCTGCAACATCGGCGGCAA 1379305 33 97.0 34 A................................ CATGTAATCATAGATACCTCCCTCTGCAATTTGT 1379238 33 97.0 35 A................................ TGAGTTGGGAAGATATCACAACCGAAAAAGGCACA 1379170 33 100.0 33 ................................. ATGTGCCAAATATCGCCGACGGATTGACCAGGG 1379104 33 100.0 37 ................................. CCCCCGCCAAGAGGGAAAATGCTAACGACCGTGTCAG 1379034 33 97.0 33 A................................ AGCTGCCACCTCTTTGCCACAGCATGCTTTTTG 1378968 33 100.0 34 ................................. ACTCTTGAGGATGCAAAACGCGCCGGGCTGGTCA 1378901 33 97.0 34 A................................ AGCATCTTCCGAGCCGAGCGGATCACGGCTGCCG 1378834 33 97.0 35 T................................ GAGTAATCCGATAATCAGAGCCGTCAACGAGTCCA 1378766 33 97.0 34 T................................ TGCCATGCTCATCTCCAAGCGGGCGCGGCGGTGA 1378699 33 97.0 35 G................................ TTTGTGTAACGCCTCATAAGAGGCATTGTAGCTTT 1378631 33 100.0 35 ................................. GCTGGCATACTTGACGATGTACCAGACAGATCTGG 1378563 33 100.0 35 ................................. ATTGCCCGCCGATAAGAATGTAAAAAATCACGAAC 1378495 33 97.0 33 G................................ AGGTGACGCTGGATGTGCTGTACGGCGTTGCCG 1378429 33 97.0 33 A................................ GTGCAGGACTGCGCGGATGCGGTCAGCGATGCT 1378363 33 100.0 33 ................................. ACTGCACAGGACAAAGCTGCGAACAGTGCAGTG 1378297 33 97.0 34 A................................ TATGCCGCCAACCGCGATGCCATCATGCAGGCTT 1378230 33 97.0 34 T................................ AGTGATGACCAAATCGAGCGGTCGCTCGATGTGC 1378163 33 97.0 33 A................................ TTATTGAGTAGCACGAAGTACAGATACATGGCT 1378097 33 100.0 32 ................................. CTGTTTGAAATGATCAAACGGGTATGGGAAGG 1378032 33 100.0 34 ................................. CACCAGGGCAGGAACCGCGGCGTTGAGGTAGCGG 1377965 33 97.0 34 T................................ CAATCAGCGAATTCTGTTCCGTTCGAGAATGGTT 1377898 33 97.0 33 T................................ ACTGCACAGGACAAAGCTGCGAACAGTGCAGTG 1377832 33 97.0 30 A................................ GCAAATTTGTAGAGGCGGTCCCTGCTCAAG 1377769 33 97.0 34 T................................ ATACTGAGTACCGGAGATTTGCAGCCGGTCATCC 1377702 33 97.0 33 T................................ ATTTTGGTTGGTCTCCTTTTGGTTATATGTTTT 1377636 33 97.0 34 G................................ ACAGCAGATCGGCTGCCGCACCGTAGGGGTCGTA 1377569 33 100.0 32 ................................. AAGCCTATCGGCTCGTTTGGATAAGCGGGCGG 1377504 33 97.0 33 G................................ GAGGATGTCGTTTTTGCCGAACAGTTACAGACT 1377438 33 97.0 33 A................................ TCCCATCAGCTATCTATTTGATTTTCAGATTCA 1377372 33 97.0 36 G................................ AATTGAAAGACTCTCGACGGACTCGGCGTCAGGGAT 1377303 33 97.0 33 G................................ ACAGATGGGGCGTTCCTAAATCAGAGGGATACT 1377237 33 97.0 32 T................................ TCAAAGCCCTGATCCAGAAGAAGCCTTACCTG 1377172 33 97.0 33 G................................ ACTGACAGTCACTCCCGTCATCCTGCGTACTGC 1377106 33 100.0 33 ................................. GACATTGATAGAGATGTGCGACAACGTCGGAGA 1377040 33 97.0 32 T................................ GTGGGTGTCGATAGCTCGCCAGGCCGCATCGA 1376975 33 97.0 32 G................................ GATTCAAAAATATCGCCAGCAACAGTGACCCG 1376910 33 97.0 36 A................................ TGTTTTTGTCAACACTAGCAAGAACAGTAATAGCAA 1376841 33 97.0 33 A................................ GGCCATCATGGTTGATCAGCGAGAACCAGACCA 1376775 33 100.0 34 ................................. GACCAGTCGCCAACGAACATCAGCGCAGAGGCCG 1376708 33 97.0 34 G................................ CTGATGATGTGATTTATCGGCATATTGACAACCT 1376641 33 97.0 34 T................................ TTAGCCTTTTTGATTGTAGTAGTGTTCTTGCTAT 1376574 33 97.0 33 T................................ TTGCTATTGTGTGCGCTGGCGTTTGTGATAAGG 1376508 33 100.0 32 ................................. GACACTTGGAAGTTATACTGTCACGGGTAAGA 1376443 33 97.0 33 G................................ GTGTTTGATACCAGGATGCCCAAATCTTGTCGA 1376377 33 97.0 35 T................................ TTGCAGTTAAGGCTATTGTCGGTAACATTTCCCCG 1376309 33 97.0 32 G................................ GGGTTCGAGACGGCAAGAGATCGCTGGTACGA 1376244 33 97.0 33 A................................ TATTATATAATGGAGAGTTTTTTACTGTATCCT 1376178 33 97.0 35 T................................ GTAACTATTACGGCGTGTAAATAGGTGCTGTATGA 1376110 33 97.0 33 A................................ CTCAGAAAGAAGCCCTCCCGGTAGACGCTAAGT 1376044 33 100.0 34 ................................. GCGCATTTTTCTGCCTCATCGTCTGGCCACAACA 1375977 33 100.0 34 ................................. GGTAGCAAAGCCCGAAACATTACTGCCCGTCGTA 1375910 33 97.0 34 G................................ AACGATTTTTTGTAGCATGTAGGCAACCGTTGCA 1375843 33 97.0 34 T................................ GTGATAACTGCTATGGATTGCTAGATGATCGTCT 1375776 33 97.0 35 A................................ CTGTCAATAGTGTTTTCAATTCCGACAGAATTACT 1375708 33 100.0 32 ................................. TGCCAGGCAGCCTCAGAGGTCTGCTTCAGCCC 1375643 33 97.0 34 G................................ CATCCTGTCGCTTTGTGCATCGGTTGCTGGTTTT 1375576 33 97.0 33 T................................ ATTGCAGTAATTCGTAGCCTGCATTTCGCATGT 1375510 33 100.0 32 ................................. AGTGCGGCGTGCTGTAACTCGCAAAATATCAC 1375445 33 97.0 33 G................................ TGAAGAGTACCTTTGATGTTCTCAATATGTCCT 1375379 33 97.0 34 G................................ CGTACTTGATGCGGTGTTTGGGTGTCAAATCTGG 1375312 33 100.0 36 ................................. TCCGATTGGTTTGGAGCGGTAATTTACGGGTTAGCG 1375243 33 100.0 33 ................................. GCGCGCTGGATTGATCTGACCGGAGGTGTGTTT 1375177 33 100.0 33 ................................. CGTTCGGCTGGAACGACAAGCGCAAGCAGGAGT 1375111 33 97.0 34 G................................ TGATAACAAAACCGAAAATCGAAACACCTCCCCA 1375044 33 97.0 34 A................................ AACCGTTTGCGCAAATTGGCCGCTTCCGACCTGA 1374977 33 97.0 34 G................................ ATCAACCCAACGATAAAAATCCTTCGCGTCACAC 1374910 33 100.0 33 ................................. TCGATACAACCGCAGCAGCGCCCGTGCCGCCTT 1374844 33 97.0 34 G................................ ACCCGTACTGATTCGTCATGCGCAGTACTCTGCG 1374777 33 100.0 34 ................................. CAAGAACAATGAGCAAAGCAGCATCGCGCTCGCT 1374710 33 97.0 34 G................................ TCAACTGGTCGGTTGCATCCTTGCGGGCATACAA 1374643 33 100.0 34 ................................. GACTGCAAAGCCAAACGACATCTGATCAACATCA 1374576 33 100.0 30 ................................. CTTGCGTTGACTTTGAAACCGGCGATGAAA 1374513 33 97.0 31 T................................ TGACGGCCTGGGTTGAGCCTGCAGTGAAGTA 1374449 33 100.0 34 ................................. ACAACCATTATGCAAGTCGTGTCACAGCCGCAAG 1374382 33 97.0 34 A................................ ACGTCTGCAAGATATGCGGACGCGAGCAATTCGA 1374315 33 97.0 31 T................................ CCCTCCGGAAGCAGAAGACGACCGCTATCAG 1374251 33 97.0 34 G................................ TTTTCCCGTCCATTGACTGACAGTATGGGCAGGT 1374184 33 100.0 34 ................................. ATCCGATGTCTCAGGCTCTTGGTAAGTCTTGGGC 1374117 33 97.0 34 T................................ TCCCTCCGGAAGCAGAAGACGACCGCTATCAGGT 1374050 33 97.0 35 T................................ CCAGACCATGATGTCACCGTAGGTGGCGGTTCGAG 1373982 33 97.0 34 G................................ GCGTATCAAAATCACTCTGCCGAATACTCAGTAT 1373915 33 97.0 33 G................................ TGCTGCATCCCGTGGGTATGACGCAAACTGGCG 1373849 33 100.0 33 ................................. CGCAGGACTGGCTGGAACACCGCGATCTGGTGA 1373783 33 97.0 33 A................................ AAGAACTGACATTTGTTCGACCCAACGAACTCG 1373717 33 97.0 30 A................................ AAGTGACTGATACGCCAGTGCTGGAGTAAG 1373654 33 97.0 33 A................................ GCACACCTGCTTATAATACATCACCCGTTGCTC 1373588 33 97.0 33 T................................ GGCGCAGTATATTCGACAACATCGGCAGATTGT 1373522 33 97.0 33 T................................ TCTTTGGGGAGAATGTCAAGGTGAAGGCATGAA 1373456 33 100.0 33 ................................. ACCATAAAGGTTTTGCGGGATGAAATAACCGCC 1373390 33 97.0 33 T................................ TAGACGAAATTCGGCGAAGTGTTGGAGGCGGTA 1373324 33 100.0 33 ................................. AAATTGCAACGGCTGACGACGAGAACCGCGCGC 1373258 33 100.0 32 ................................. TATGAGCATGCAACTCGTCAATGATTGCCCCG 1373193 33 97.0 36 T................................ TGGTCAACTCTACTTCTATGAGGTTGGGTTCCAGAA 1373124 33 97.0 35 A................................ CGTTATTTTTCTCTGGCACGTGCGGGTATAAGGTG 1373056 33 97.0 34 A................................ TGTTGTGCAATTGGTGAGCGCTGGAATCATGGAT 1372989 33 97.0 33 A................................ AGGCTCACCGGATGATAAGTCACTCTGCACCTC 1372923 33 100.0 32 ................................. CAAACTGCAAAGTACGGAGTTTATAAACTTCA 1372858 33 100.0 32 ................................. ACTTTGTGCCTTTGCCATTGCTCATCCGTCAT 1372793 33 97.0 34 A................................ CATGAGCGCGCCGATGAAAGAGCTGGAGAAGTTG 1372726 33 97.0 34 A................................ GAGTGACATCAAAGCCAGCCTTGTGCGCATTGAA 1372659 33 97.0 33 G................................ ATCTGCCCGTCCTGCTCATACCAGCGGTCGGTT 1372593 33 97.0 32 T................................ CGCGTTCCTCCGCACATGATTGCTGATCTCGA 1372528 33 100.0 33 ................................. TTCGTAATGGCGCGCCAGGTGTTTATACACGCT 1372462 33 97.0 33 T................................ TTTGAGTAAACGGGAGGAACATAATATGAACGA 1372396 33 97.0 34 G................................ GGCAACAATGCAGAGCCAGGGTTTGTATTAGTAC 1372329 33 97.0 33 A................................ CCATGCATGAGAGAGGGAGTCAATCACCAATAC 1372263 33 97.0 34 T................................ GTGAACTGGAAGAACTGAATCCGCTCCCGGACGG 1372196 33 97.0 34 T................................ TTACGTGGATGCTTTTGCGTCACGCGAGGCTTAC 1372129 33 97.0 33 G................................ CTGAAGCAGACCGCGCTGGGGTTGAGCGTCATC 1372063 33 97.0 33 T................................ TTGCGGAGGGCGGAGAGAAACTCGTAGCAAAGC 1371997 33 97.0 33 A................................ ACTCCACTGATTGAACACCGCTGCATAACCTTC 1371931 33 97.0 35 A................................ TTCCAGAGTGTGTGATAGAAATGGTTGATTATTCT 1371863 33 100.0 33 ................................. CCTGATAAGCCGTTTACTTGATAGCGCAACCGC 1371797 33 97.0 34 A................................ CGTTCTGCAAATCCAAAGGTAGAACATCACTCAT 1371730 33 97.0 38 A................................ ATGCTCAGTCCGGATCATAACGGAAAGGCTTACACCGG 1371659 33 100.0 35 ................................. AGCGCACGGAAGGCATCAGGATTCATGATGCGGGC 1371591 33 97.0 32 A................................ AACGGACAACTCAAACTTTGCCAACGCTTTTT 1371526 33 97.0 33 G................................ CGCGCTCAGTGTCAATGACTGCAATTTTTCCCC 1371460 33 100.0 34 ................................. CCGGTTCGGCCGGGATTATGCGGGTTATTGCGCA 1371393 33 97.0 34 A................................ AGTGACGTATAAGCCAGCGCAACAATACGAGTAC 1371326 33 97.0 35 A................................ AAAGTGATTGGCACCAGGCTGGGCGCGAAAAGGGA 1371258 33 97.0 33 T................................ CGTAAACGTTTCCAACTGGTCAAACTCAATCAG 1371192 33 97.0 32 G................................ AAATAATCTGCCGTATTTTTCAGCCGCCAGCC 1371127 33 97.0 34 G................................ TGTCGAGGAGATGACTAATGGCGAGTATTATGCG 1371060 33 100.0 33 ................................. ACCAAACGCTAAAGGCTCATGGCGTAATATTCG 1370994 33 100.0 34 ................................. AAATTCTGTAATCTTGTTCCTGACGGGAGCAATC 1370927 33 100.0 34 ................................. ATACCACCAGTAAGCATGACATCATGAATCTCTC 1370860 33 97.0 35 A................................ AGTGATTGGTAATTGCTCTAATATCCTCCATTCTA 1370792 33 97.0 36 T................................ AGGAAGATGTACAAGAGATTTTGAAGATTCTAAAGG 1370723 33 97.0 33 A................................ GCTATGGCTTCGTAATCGTATGAGCCACGGCCT 1370657 33 97.0 32 T................................ GAGGAGAAATGAAATGAACGAATCAACACTTG 1370592 33 100.0 34 ................................. ATGGGATGGAAGTGGAATAATTGCGCGCGGTGTA 1370525 33 100.0 33 ................................. GCACATACTCAGTCCGGCTGCGCATGGTGGTAA 1370459 33 97.0 33 T................................ TTGGAACGGGCGGGCGCGAGGCGCGTTGCGGCT 1370393 33 97.0 32 T................................ CTCTATCAGGAACTGATGAAATGGAGGAAAAA 1370328 33 97.0 32 T................................ CGCATGTAGCGGACAATTGAGCCAATGATCAT 1370263 33 100.0 32 ................................. TTCATGAGAACGGACAACGGCACGATAACGAT 1370198 33 97.0 33 T................................ TCCTTTTCAAAAACAATCAGTTTTTCTCTATCG 1370132 33 97.0 32 T................................ ACTTTGAAAGGTGCACAATTCCAGCACTCTAC 1370067 33 97.0 33 A................................ AACGCACTCCTGGCGGCGGTGAAACCTTCCGGG 1370001 33 97.0 33 T................................ AAAGGTGGCGGCGGTGCGCTGGTTAGAGTACAC 1369935 33 97.0 32 G................................ GGGTAACGGCAACTGGTTGTACCAACTCATGT 1369870 33 97.0 34 A................................ ACGGTCACCGAATCCGCACCCTCTTCACGCTCCA 1369803 33 100.0 34 ................................. TAATGCGCCGCCGGTGGCGCGGATTGATTCGTTG 1369736 33 100.0 34 ................................. TCTACCGTTGCCATTCATCCTCCTGCTATCTGCT 1369669 33 97.0 35 T................................ GTAGATTTGCTCCGGCGTGTATTTCGGCTCTTCGG 1369601 33 97.0 33 G................................ GGGAATCGCTGATGAAAGCCGCAGCAAAAGCAA 1369535 33 97.0 32 A................................ ACGACAGATGTCAGCAAATAATGGTGCAATAA 1369470 33 97.0 37 T................................ AGCCCTGTGGCGGTATCTCACCAGTCGGAATACTGAG 1369400 33 97.0 30 T................................ TGGAATCTGATCAATCAGGGAGGGAAAACA 1369337 33 97.0 33 T................................ TCTTTATGAAGAACTAGAAAGGAGATTGAAATG 1369271 33 97.0 34 A................................ CTCGAAGATTGAAAGGGGGTGGGTGGGCCTATAT 1369204 33 84.8 0 G..........................AA.T.T | ========== ====== ====== ====== ================================= ====================================== ================== 225 33 97.5 33 CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC # Left flank : AGGTTAATGATCCTGTTCAAGAGGAGGCATGATATGATGGTCTTAATTACTTATGATGTGAATACGGAGACTGATGAAGGGAAAAAACGTCTCCGCAAGGTTGCCAAAGCCTGCCAGGATTATGGTCAAAGAGTACAAAATTCGGTGTTTGAGTGTGTAATCGATCCGGCGCGTTTAAGGATTTTACAAGCCAAATTAGAAAAACTCATTGACAAAAAGAAAGACAGCCTGCGCTATTATTATCTTGGAGATGAGTGGAAAAATCGGGTAGAACACGTTGGCGCAAAACCGAGTTTCGATTTAACAGGGACACTTATCGCATGAGAATTGATTGCGAACCGCAAGTGAACATAAAAATATTGATAGGTTCGCAGAAAAAAACGCACCTTAACAAAAGAATATGGGGAATAAAGAAGAAATTTATCAGAAATAAATTAACTGATAGAGCCAAAAAGAGACTATATTTAGGGGAAGAGAAGGTATATAGAGCCAGATTTTGC # Right flank : GTTTTGATTACTCAGTCACTAGGTAACTAATATGATTCGCCAACAAAAAAGGCGAGGATGTGGAAAACACCCTCGCCTGCTGTCGGGGCGGGCGGATTTGAACCGCCGACCTCACGGACCCGAACCGTGCGCTCTATCCGGGCTGAGCCACGCCCCGAAACTGAACTTATTTTACCCTACACCCTCGGGGATGGCAAGGAAATTTGCCAAAACTGGATCGGTATTTTCTCCGTTGATTTTTCCCCAACTTGATATAGAATATATACAACGAACTGGTTGGGAGCGTTAACAATGGCCGAACTCAACCTCTCTATCATGGATCGCGGTCCAGACACGATGACTTACCTCAAGCCATTACTGGACCAGTTTTATCATCAGCAAAATATTCGGGTCAATGTCAATCTCATTGGATGGCAGAACGGACGCAGTGAACTGGTACGGTATGCCATCTACCATAATTCCCCAGATGTGTCTGAAGTGGGCACAACCTGGACCAGTGA # Questionable array : NO Score: 8.45 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2688388-2688575 **** Predicted by CRISPRDetect 2.4 *** >NC_014960.1 Anaerolinea thermophila UNI-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 2688388 36 100.0 38 .................................... AAACTCCTGACGGTATCGGGTATCTATTGGGCAAAAAT 2688462 36 100.0 42 .................................... TCCCATCCGCAGGGTGAGGCGTTTGCGGCTCACCGCCCAGCA 2688540 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ========================================== ================== 3 36 99.1 40 GTCAGAATCTAAGAAGCCCCGGAAGGGGATTAAGAC # Left flank : GAATGACGGACGCAGTTTTTACGTGCTGGCATACGATATCAGCGATGACCGCCGTCGCTTAAAACTTGCCCGGCTGATGGAATCGCTGGGGGTGCGCGTGCAGGGCAGTGTCTTTGAGGCTTATCTGACAGCCACAGAACTGGAACGGCTTCTACGTCGATGCAGTAAAATTTTGAAGAAAGAAGAGGATAGTTTGCGCATCTACCGCCTGTGCACAGCATGCCGAGAGAACATCCGCACAGAAGGGAAAGGGAAAATTACCCCGCCGCCCCAGGTAACCGTAATTTAAACCATTTTGCGTACCCCCCTCTGTTTAAGCCAAAAAACGCCCCTTTTTAATAGGGGGGTACGCAAAATTCGGGCATGTGGAAGAAAAAACAGGAAACTTGCCGGAAATGTGCGCAAAACGACTTGATTTTTATAAAAAATTGTGCTATTCTGGATACAGTTCTGAACTTTCAGGCTCTCTTCTTGCAAACCAGTGGAAGGGCAAAAGTACA # Right flank : GCCTTTGAGAGGTTCGGGGAAAAGTTATCCCAAGGGAAGCAGAGAGAATCGCAAAGCCAAGAAAAAGACGAAATATCAAGCCCGGCATTCAATAGATGAATCACCGGGCTTTGTGAAATCAGGGAAGACTTTCCTTAGTCTCCATCAGGCGGACGCCACCATCCCAGCATCTGCGACAGTGCCAGCCAGATGAAGCGCGGATTGTTTACCAGATACCGCCTCCAGAGGCGTTTGGGTTCGCTCATCAGACGGAAAAGCCATTCCAGGCCTGCACGCTGCATCCAGGCAGGTGCCTGAGGCTTCAGCCCGGCAAGGAAATCAAAAGCCGCACCCACACCCAGCATCACTGGAACGGGCAATTTTCCTGCATGCTCTGCCATCCAGAGTTCCTGCTTAGGTGCCCCCAAACCTACCCAAAACAAATGAGGTGCAGCAACTTGCACACGCTCCACCAGTTCTTCCTCTTCCCTCTCTGTAAGGGGGCGGAAGGGGGGGGATTC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAATCTAAGAAGCCCCGGAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 5 3146253-3137389 **** Predicted by CRISPRDetect 2.4 *** >NC_014960.1 Anaerolinea thermophila UNI-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================== ================== 3146252 37 97.3 36 ......T.............................. TTTTTCCAACACAGGTCTTTTTGAAGGTGCGATTTG 3146179 37 97.3 38 ......T.............................. CAAAGTTCGCCCGCTCGTGGGTAAGCGATATTGGGGTA 3146104 37 97.3 36 ......T.............................. TTCGGGTTGGGCTTCCTCTACACACCGCGCAAATTC 3146031 37 97.3 37 ......T.............................. CTAAACGGCTGTGCGCCTGACAGGGTGGACCTCCGAT 3145957 37 97.3 35 ......T.............................. TTAATCTCGAAAATTTGCGAGAAGGGAGTAATCTC 3145885 37 97.3 36 ......T.............................. TCTGTATAGCGTCATACTCGCCATAGAGCCACTCCA 3145812 37 97.3 35 ......T.............................. ATTGGTCCAGTGTAAACCGCGCGCCCTCCGCCGAG 3145740 37 97.3 36 ......T.............................. TGTTTTGGGTTCCACGTGTTCGGGTAGCGGAGGAAC 3145667 37 97.3 37 ......T.............................. TACTCTCGTGGGACAGGCGTGAAGAAGTAGGTAAGCA 3145593 37 97.3 37 ......T.............................. GACGTTTAGTGTTGCCGTCACCGACCAGGAAGGCCAA 3145519 37 97.3 35 ......T.............................. ATCTTTCCCCCTCTTCTGGTAGGGGGGCAATCTCT 3145447 37 97.3 37 ......T.............................. AGACGTCCGAGGGCGCTGGCGGCGGAAGCAACAATAT 3145373 37 97.3 36 ......T.............................. TTCGCGAGGTGCTGGATGCTCGACTCTCTGGACAGG 3145300 37 97.3 35 ......T.............................. TCCTTTCTAGTCTATCAGATTTTTAAGGTGCTGAC 3145228 37 97.3 35 ......T.............................. CATCGTGGTTCTGCGTACTTGAAAAAGGCGTTGGC 3145156 37 97.3 37 ......T.............................. AGATCGCGGATGCTGGGCAGGACAATTGATGCCCATT 3145082 37 97.3 34 ......T.............................. AGCAACTTGCATGCGGTTGCTCTGTGGCAACCGT 3145011 37 97.3 35 ......T.............................. CATACGGTACTAATTGTCAAGTGTTTTGGGGACGA 3144939 37 97.3 40 ......T.............................. CCGCGGCGAACGCTTCGCCGAGTTTTACTAGTGCTGCGAC 3144862 37 97.3 36 ......T.............................. CGCCCGCTCCAGTCCGATGCCAGGAAGTCCCATCAG 3144789 37 97.3 37 ......T.............................. CTTTAACTTTCACGGTAGCAATTGCTGTTTTTTTGGA 3144715 37 97.3 37 ......T.............................. TCAGAAATTTGTACGCAGTTTCGCGTTCCTTGTTCCC 3144641 37 97.3 36 ......T.............................. CGCGGCACTCGGCTTCGTCTTTGAAAATCGCCAGGA 3144568 37 97.3 37 ......T.............................. ACCTGTGCGATGAAGTCAAATTCTTGACGGATTTGTA 3144494 37 97.3 35 ......T.............................. CTTCTCGGCATCGTAGTCGCACCATTGCTGAGGCA 3144422 37 97.3 36 ......T.............................. ACCGAAAACAGGTAAATCAAACCCGATACGTTTCAC 3144349 37 97.3 37 ......T.............................. CATCCTCAACAACTTGTAATACACGATACCCCCTACG 3144275 37 97.3 36 ......T.............................. GATATTCGAGATTAAGGGCAATCCTCTCTATTACCC 3144202 37 97.3 36 ......T.............................. AGTGCTAAATTCGGTGTTCCGGAGAGCGAGCTCAGT 3144129 37 97.3 36 ......T.............................. TTGAAGAGTCTGTAATAACGTTGTCGACCCCTCTGG 3144056 37 100.0 37 ..................................... TTTTTCTAATTACGGCAGAATCATCCTCTATGCCGTC 3143982 37 100.0 36 ..................................... GTCAGTTCGATCCCGTACTGACTGAAGCCTTTCAAG 3143909 37 100.0 36 ..................................... TATTCCGCCAGAGTTGCCAGCCTACGTAATTATCTA 3143836 37 100.0 36 ..................................... ATTGTTTTGTTGATTCTCATCAAATTAACGATTTCA 3143763 37 100.0 36 ..................................... AACGGAACGGACACTGTTGACGCATAAGCGTAAGCC 3143690 37 100.0 36 ..................................... CAAGACATGTCAGAATGAGTGAGGGCGCCCTACACT 3143617 37 100.0 35 ..................................... AATTTCAGTTTTGTGTACTACGGTACCTGACATGG 3143545 37 100.0 35 ..................................... ACCGTGCCGACCTCGATACCGTCCAAAATCACGAC 3143473 37 100.0 35 ..................................... TATTCCTCAAAGTATGACGGCAACTTCCTTGCCGC 3143401 37 100.0 38 ..................................... ACTTGCTAGCAGCAGTTCTGGATTTGGAACTGCTGCAG 3143326 37 100.0 37 ..................................... ATCATCAAGAAACGTCAAGCCGGATTCGGCGGGACCT 3143252 37 100.0 36 ..................................... ATCGAGGACGCATCAGCATGAACCCGGTCCCGAACC 3143179 37 100.0 35 ..................................... ATCGTCGCACATCGTCCAGAGTTCCGACCTCGACA 3143107 37 100.0 37 ..................................... CCATAAACCCTCAGTGATTTTCGCCTTGACCGGCTTA 3143033 37 100.0 39 ..................................... TTTTGATTGCCCCGATTACATCCCTTACCATTACACAAG 3142957 37 100.0 38 ..................................... TTGCTGGCTTACGTTGAGGAAGAAAAAGAATGGGCATT 3142882 37 100.0 37 ..................................... TTGAGGGTTCCAGCGATGAACACGGGGCGCCCCTTTC 3142808 37 100.0 35 ..................................... CATTACGGAAATTAGCGTCACTCGCTTTGCCGGGC 3142736 37 100.0 36 ..................................... TCTTTCTCGACGAGCCGGACACTGCCGACCCTAAAA 3142663 37 100.0 36 ..................................... GGGTGTAGGCAAAGTACCTGCGGAAAAACGCGCGCT 3142590 37 100.0 36 ..................................... ATAAGGTGTTTGCTTCGAACCTGGGGATGTGGATTA 3142517 37 100.0 35 ..................................... TTCCACTATCCAGGCGGGTTTTCATCCCGCCTTTT 3142445 37 100.0 36 ..................................... CGAAGGTAACCAGCGGCGACTGCGCATACCAGTAAG 3142372 37 100.0 36 ..................................... CTCCAGGGTCAAGACGGTCATAAACGCCCCAGACCT 3142299 37 100.0 36 ..................................... GTCAAGGACGACGACTGCGTCGTCGGGCATGGGCAG 3142226 37 100.0 37 ..................................... CCTCATTGTAGTCACGGGCAAATTTTTTGATTTCCTT 3142152 37 100.0 37 ..................................... CTCTCTGAGCGCAGAGAATTCCACAAAGCCGCTTTGC 3142078 37 100.0 35 ..................................... TCACTCTGGTAGACAGCGTCTTTACCAGATTGGCT 3142006 37 100.0 35 ..................................... TGAGGATATCAAATTCAAAAAAGTGCCTATCGGCT 3141934 37 100.0 38 ..................................... CTTTCAGCTCACGGCCTTCTGTAGCGCCGAAATGCTCC 3141859 37 100.0 36 ..................................... AGACTGGTGCTCGTGCTTTCGCACCGCAAATACCGG 3141786 37 100.0 35 ..................................... TCAGTGCTACCGAAATTCTCCTGCGAGAGGAGCTT 3141714 37 100.0 37 ..................................... ATATTGTTGTAATCGTCTTTCATGATCAATCCCGGTG 3141640 37 100.0 38 ..................................... GCGGAAGAGCGCGTCTCTAATCTCTCACTGCAACGACA 3141565 37 100.0 35 ..................................... CCTCGACACGGTAAGGGGGATGTTTCTGAAAAAAC 3141493 37 100.0 36 ..................................... TCACCTCGACTTTGTTACCATGCTTTGGGTTATATG 3141420 37 100.0 35 ..................................... AGCGACCACAGTACCACCTAAATTCTCATGTCTGA 3141348 37 100.0 35 ..................................... GTTCGTTGTGTTGGTCTTCTGCCAGATGTACCAGT 3141276 37 100.0 36 ..................................... GCAACGTCAGATTGCGGAGTTGTCAACGCGCGTCAA 3141203 37 100.0 36 ..................................... CTCTTTGATGATTCGCGGCGAGCAGTAGATCATGGG 3141130 37 100.0 35 ..................................... AATTCAGGAACAACTTCAGTACTTAACTCTTTCAT 3141058 37 100.0 37 ..................................... TCTAAAGATTTGATAATACGTGTCTTATGAGCCACCT 3140984 37 100.0 36 ..................................... ACGTAGAGGTCTATAGACATCTGCACTGATCCCAAT 3140911 37 100.0 37 ..................................... GCTGGTCTTCCTGCTGGTCTTCCGCAACCTCGTACCA 3140837 37 100.0 36 ..................................... CAGTTTGTACCTTCAGGTTTATCAACATCGGCGAAT 3140764 37 100.0 38 ..................................... ACAAATGACAGGGCCGCGCCCTCCCCGATATATCCGCT 3140689 37 100.0 37 ..................................... TTTTTCCTCCTTTTTTCTTTTCAACTGTGTAACCTTG 3140615 37 100.0 35 ..................................... CTTTTTTGGACAGCAGGTCCTCCTGCGCTCGCAGG 3140543 37 100.0 36 ..................................... GAGGGCCAAGCCCTCTCCAGGATTGGAAGCGTTCCA 3140470 37 100.0 36 ..................................... CTTCTACTTCGTACCAGCCCGTTTCGCTCTTACGTC 3140397 37 100.0 36 ..................................... TCCTAGGCCCGTCCGCAAACAGTGACCACCTCTTGG 3140324 37 100.0 37 ..................................... CTTGAGCTTGATTGATTCTCCCGCTGCCATCGCATCG 3140250 37 100.0 37 ..................................... ATTGCAGCTTTCGCCTGCTCTACGTACTGCGCATTCT 3140176 37 100.0 35 ..................................... TGATGATGTTTATCGTGATATTCCTTCTCTTCGTT 3140104 37 100.0 36 ..................................... GGTTGGTCAACAGCTTGAAGCGCGCGCGATACAAAA 3140031 37 100.0 37 ..................................... TCTATCTGGAGGCAGTTACCCCATTTGACGGAACACA 3139957 37 100.0 37 ..................................... CCTGCAGTTGTCCCAGTGAAGGGACAACTGGCGTTGT 3139883 37 100.0 35 ..................................... TCATACTGGGGAGGATTTCCCCAGTATGACGGAAA 3139811 37 100.0 36 ..................................... ACCGGAGGTCTCGCTGCGTTACGCAGATGCTGTAGA 3139738 37 100.0 35 ..................................... AGGCGAGGTGTATGAACGGTCAGGGTAAAGCACAG 3139666 37 100.0 38 ..................................... TCATCATCGCGGATTGCTGAAATCCGTGCGACCGTAAT 3139591 37 100.0 38 ..................................... GGTCTAATCACGAATAGGGCATGCTTGCCCAGGGCAAG 3139516 37 100.0 36 ..................................... TCCAAGAGGATGACATCGTCATCCTCCAGCAGTTCC 3139443 37 100.0 36 ..................................... ACTCGGTCACAGTGTAAATCTTCTGCTTGTTTATCA 3139370 37 100.0 39 ..................................... CAAGAACTGGCGGGATTTCACTCAGGAATCCCTCGACTT 3139294 37 100.0 35 ..................................... TAATTCACCTCCTATTTGAACTCAATTGGAATTGC 3139222 37 100.0 36 ..................................... TTTTTTGGCGTACAACAGGTCCTCCTGCGCTCGCAG 3139149 37 100.0 38 ..................................... ATGACGGCTGGTGCGACAAGTGCCACTCTTATTGCTGG 3139074 37 100.0 37 ..................................... CCCCTCGACGCGGGGGAGGGCATTGAAACAGTGATGT 3139000 37 100.0 36 ..................................... ACAGCGGCTTTCTTCAGGTCATCTTTTGTTCTGACC 3138927 37 100.0 35 ..................................... ACATAATGAGCCTCCCTGCAGTGGTAACACAAAGC 3138855 37 100.0 35 ..................................... CGCTTGTTCAACGCGATACAGGTCAGCAGCTCTTT 3138783 37 100.0 37 ..................................... GCTGAGATGCCATGCCCAGTCGACAGCCTTAGTCTCC 3138709 37 100.0 35 ..................................... GGAAAGATGATTTTTTGATGCAATCAGGGCATGGT 3138637 37 100.0 35 ..................................... CCTCTGCTGCGTGAGGGGCTTGAAATCCTACCTGT 3138565 37 100.0 38 ..................................... CAAAAAAAAACGGCTGAGTACTGCGAAACAGGAGTTGA 3138490 37 100.0 37 ..................................... GGTCAGCTCAGTGAAAACGACGGCATCGTCGTCACGG 3138416 37 100.0 36 ..................................... CTGAACTCCAAGTTGTGATTGGCGCGGATACAAACC 3138343 37 100.0 35 ..................................... AGGAAAAGGCGCTGTGCTACCATTGCCGGGAGGCT 3138271 37 100.0 35 ..................................... ATGCTCAAGGGAGATAGACACGGAACACACACTCA 3138199 37 100.0 42 ..................................... CAGTACGAATTCAATGGCGGCTGTCACCCACGCCACTACGGC 3138120 37 100.0 37 ..................................... CTGAGTTGATTACTCAGTGGATTTTCTTTTACACATA 3138046 37 100.0 36 ..................................... TCGTCCTCGATGGCGCGAAGGAAATCCCCGCCAAAC 3137973 37 100.0 37 ..................................... TTTGTCACGCCCCCCCCCAGGTGGCACGCCTGGGGGA 3137899 37 100.0 36 ..................................... GCATTCTGACTGAGCCGATGGCAAATCGGTTCAGTC 3137826 37 100.0 36 ..................................... TTGATTTCCGCCGCAGGGATTTCCTTTGTTCCGTCG 3137753 37 100.0 37 ..................................... GTTTTTTTTGTCGCTTTCAATCCACGCCCCCGCCGGG 3137679 37 83.8 53 ...............................CCCCCG TTCGGGGGGCGCGGCTGAAACTCTGGCAAAAGGCGGTTGGCGAGCTTGCCGAG 3137589 37 91.9 37 CCA.................................. TGAATATTTCATGCAACTCTTAAACAAATTGCTTCGC 3137515 37 83.8 53 ...............................CCCCCG TTCGGGGGGCGCGGCTGAAACTCTGGCAAAAGGCGGTTGGCGAGCCTGCCGAG 3137425 37 73.0 0 CCA...................C........CCCCGT | ========== ====== ====== ====== ===================================== ===================================================== ================== 121 37 98.8 37 GTTGCACCCCCCTCGATCCGTTAGTGGATACTGAAAC # Left flank : GGGCTGGTGGATCTGGTGGTTTGGGTGGACGCTCCCCCGCCGGGAGAAGTGATACCGGTAGATTTCAAACTGTCTTTTAAGAGCGGTGAACACGTGCAGATGCAGCTGATGGCGTATGGACTCCTGCTGGAAGAGTTGAGCGGCCGGCCTGCTCCACGGGGGTACCTGGTGGAAATTCCCCTGCGCAGGGTGGTGGAAGTGCCGTTTACCCCTGCCCTGCGCCGCAAGGTGGAAGACGCCCTGCAAGCCATGAAAGCCATGTTGGAGAGCGAGCAAATGCCCGAACCCACATCCCAGCGCATGCGCTGTTTGGGGTGTGAGTTTCGCCGATTTTGCAATGATGTGGTGTGATCACCGGAATTTTTCGCAAATCCCCCAGTTTTTTAAGCAAAAATTGATTTGCGAAATAGGAAAAAATGAAAACAGAAAAAATGCCAGAAATGTGGGGGAACCATATGCTTTTCCCCCACAAATAGGGTATAATGGACGCAGAAAATGCG # Right flank : TCGGGGGGCGCGGCTGAGGGCTTCTACTGATTTTGTAAATATTCTGTTATGGATAAATGGCACAGGACCCCTAATCCCCTTGTCACAGTTGCTCTCTCATTCCTTTGGCTTTTCTTTCTTTGCCTGTTGGGATATTGCCTCGTTTCCGTAATGTTTCGACTGCTGTTGTGAACAGAGCCATGATTGCCGCCTGAGACGCTCGATGAATCTCTGTTGGGTGGATGGCGGGTGAAGCCAATCAATCCATGCGGGACGAAGTAACCGAGATGGACAGGATCAGGCAGGATATCCCTGCCCCCTGTTCTCAGAGGATGGGCATTTTTTCGCTCTTCTCCATCCTGTTTTTGCCGCTCGTTATGAGAACACCCCATCCCGATGGTATAATCAAGCCATGGAAGAGCAACTGAATCCCTTAGAGGTATCGAACGCGGCACCACGCCGCAACCTCCGCTGGCTGTACACCCTGCCCGTTGCCTTTGCCCTGGGCTTTGCGGTGGCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCCCCTCGATCCGTTAGTGGATACTGAAAC # Alternate repeat : GTTGCATCCCCCTCGATCCGTTAGTGGATACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //