Array 1 3638372-3640050 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCL010000001.1 Saccharothrix algeriensis strain DSM 44581 Ga0451104_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3638372 29 100.0 32 ............................. GCGGTCTTGAGCCAGATGGCCACGTCCTCCAC 3638433 29 96.6 32 ............................C CGCCGGGTGCTGATCAACCCCGCGTGGACGGA 3638494 29 100.0 32 ............................. AACGCCCAGACGGACCTGGACGTGTCCGTGAT 3638555 29 100.0 32 ............................. AAGGCCGCCCGCGCCGGCGAGCTTTCGGTGAT 3638616 29 96.6 32 ............................T TCTGTTCCGCCGGTACACGGCCTACCGCCCAG 3638677 29 96.6 33 ............................T GGTCTCCAGGACGACCCGGTGCAGCAGCCCGTT 3638739 29 100.0 33 ............................. CCGAGATCCACGTACGCCGGATGAACCCGTCCG 3638801 29 96.6 32 ............................C CCACGCGCTGCTCCGTGTGCTGCTGCTGGCCA 3638862 29 100.0 32 ............................. GGCTCGCGCGGACTCGGGACGGTGCAGTACGA 3638923 29 100.0 32 ............................. GTCGGCACGGTCACGCAGACCGTGACCGTGTT 3638984 29 96.6 32 ............................T GCATCACGAGGTCGGGCCGATGATCGTCCGTC 3639045 29 100.0 32 ............................. CGCCGGCACAACTCCCGTAGGCGTCTATCCAC 3639106 29 100.0 32 ............................. CCTGGACGGGCGCGAGGCCCCGAGGGTCAGAC 3639167 29 96.6 32 ............................T TCTGCGGTGACGGGGGAGTGATGGGCCTTTCC 3639228 29 96.6 32 ............................C GTGCACCGGGGCCACGCCGGGGGTGTGGACGA 3639289 29 96.6 32 ............................C CACACCACCAGGCCCCCGACCGCGGCGGCCGC 3639350 29 100.0 32 ............................. AGGTCCCCCACGAGGACCCGAAGCCCGCGAAG 3639411 29 96.6 32 ............................T GGCGGCCACGAGTCCATGAAACGAATCCGGGG 3639472 29 96.6 32 ............................A ATGCCGAGTCGCGGGTCACCCTCCCCGGTCTC 3639533 29 100.0 32 ............................. TTGCGCAGGTTCCGCAGCAGCGCCATGTACCC 3639594 29 96.6 32 ............................C ACGTGGCCGCTGGAGGAGTACGAGCAGCGCGC 3639655 29 100.0 32 ............................. GCCAAGGGTCGCAAGGCGCGGCGCAAGGCCGC 3639716 28 93.1 32 .................-..........C GTCTCGAACGTCTCACTCCGCTAGTTCGTCTT 3639776 29 93.1 32 .......T.C................... CAGTCGACCGCCACCAGCTCGGCGCTGCCGGG 3639837 29 96.6 32 ............................A TCGGGTCTCGCTAGGAACCTGGTTCCGGATAC 3639898 29 100.0 31 ............................. AGGGTGGCCTGGTCCCCAGGACCGGCCCGGA T [3639922] 3639959 29 86.2 32 ......TT...A.A............... CGCAGCGCCGTGAACGCCGAGCCCATCACCGG A [3639961] 3640021 28 82.8 0 .............A........-...GAC | CA [3640042] ========== ====== ====== ====== ============================= ================================= ================== 28 29 96.9 32 GTCTTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : CGCCGAAGGACCGACGCCCCTGTGGTGCGGCACGCCCAAGCGGGCCTGGCGGCCCGCGGGCGTGCCGCGCGAGGAAGGGCGCTGGTCCCGACGTCGGCGAGGAACGGCCAGCGACCCCCGGAGGCGACCGCAAAAGGATTACAAGAAGCGCTCGCCGCGCGGCAGGCCAGCAGGATGACCGGGACGGCACCGCCGGTTCGGCTACCGACGTGGACCGGGGCTTCGTGTCATCCCGCCGACCTCCCCGAGGGCAACCACACGCGTCAAGGGGGCAGACCCAGCCCAACGTGCCGGTACTGGCGAAAGGTGCCCCCTTGACACGCGTGGTTGGGGCGAGCCAAGTCGGCGGGATGACACGAAGCCCCTCGTCTGGCGAAGATCGGGCGGTGGAGGGTTGGCGTCGTAGGGTTCCGGCCTGGGTACTTGCCCGTACTTTCCGAGACTCAAGTGAACCGAATCAAAAACGCGATGGGCGTGGGTATAGTCGCAGGTCATGAAGT # Right flank : CCGGAACCCTGACCGCAACGACCGCTACCAGCGGCACCTATCAGCACAACGCACGATGCAGGACGACCTCGACTGACGCGGACGGTGATGAGTCTGCGGGTTGCTGGCAGTGTGAGGCCCGGTGCAGACAGAGGGTCAACTGAGAGTTGTCGGTTAGGCACACACGGCAACCAGCTAACGAATTGGCAGTTGCTTGCGATACCGAACCAATTGGAGGTTGGTCCCTATGCGCGCTCGCCTTGTTCTCGCGGTTCTACTGTTGGTCTCGCTCACCGGATGTTCTGAAGGTGATCATGCCTCAGTTATCTCTTCAACTGGAACACAGACCACGACTACTGCTACAACAACCCGGACCGCGACACCATCGCCTACGGCGACTGTTCCCAAGACGAGCCTGTTCCGGTTAGCAGAGCAGGCAAGCGGCGGCTGCTCGGGGGCTGAGTGTGCCCTCAAATTCACCATCAGCAAGATGACGGACTGCACAGGTGGCTACGCGGGTG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4954360-4954691 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCL010000001.1 Saccharothrix algeriensis strain DSM 44581 Ga0451104_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4954360 29 96.6 32 ............................G GCGGCGCGGCCGAGGTCGTGACCCGCACGGTG 4954421 29 100.0 32 ............................. AGGCCGTAGCGGGCGCGCTCGCCGGCGCGGGC 4954482 29 96.6 32 ............................A AGGCGCTGAGAGGGCCGGAGAGCCCCCGAAGC 4954543 28 89.7 32 .....-........T.T............ TCCACTGCGGCCCGACCGCGCACCTCGTCGTC 4954603 29 96.6 32 ...........................T. CAGATCGAGACTGCCGAGGACGTCTGGGCGGC 4954664 28 72.4 0 .....-....T..A..T...A..TC...G | ========== ====== ====== ====== ============================= ================================ ================== 6 29 92.0 32 GTCTTCCCCGCACGCGCGGGGGTGGTCCC # Left flank : CCACGAAAATCTGTCCATTATGCTAGCGCGGCCCGCAGACGTCCGCAGGTCTGACCGCTGTGGTGATGCAGCTGCCCATGGGACGGGGCGCCGCCGCTGGTCAACCGCTCTGGATGGGGCCTGTTGCGGGAATTGCTGCCCCGTCATCAGTAGAGAGTGAGTCGGTCTCAGCAAGGTCGCTGCCGTCTGCTCCGTCATCGGCGTGGCGATGTGCAAAACCGGTATTTATGCAGGTAGGCGAGTTAAATGGAGTATCGTGGTTTTACGTGAGTGGATCTTGCTGGTAGCGGACAGAGCGGCAGTTGCCATGGGTGTGCCTGGTCGGCTCGCTCGGAGGCAGTCTCGCCCAGCTGTAGGTAACTTTCGTGGTTTTGTGGCGTGTCATGTAGGCGACTGTGACGAAGTTGGAGCCGGAAGGCTGTTGCCAGCGACCGTTACGAAACTGTGGTGAACCGAATTAAAACGGCCGTCGCATCGGGTAAAGTCCCAGCGTACGAAGT # Right flank : GTCCTTGTGGGGAGTACTCCTCGACTAAGGCCAAGTTCCCCCCCGCGGAACAGGATGATCCTGTGGGCCGCCGCCTAACTGTGCCGTGAGCTGTGTCCAAGTGGTCATCCGTGCCGAATGTGTGCCGAAATGATGGTGCTGGCACTGCTTCTTGAGGTATCAGCCCAGGTCAGTGGATGGTTGATCGACGGAAAGCAGACCGCTCAAAATCCGTCCAGTGTGCGTTCGAGTCGCACCGGGGGCACATCATCTGAGCGCACCGAACAGCCCCTGACCTGTGGTAACCCGGCCAGGGGCTGATCTTGTCGTGTCCGGTTGCCATCCGTCGTCCACGGCTGCCCACGCCGTTGGGTCTCGGTCGATGTGGAACAGGAAGCTGTCCGGGGCCGTGCCGGACTTCCGGATGTGGTCGCGTAGCGGCGGGTGGGGGACCGGTCGGGTCTTGGCCTTCCCCTCAGGGCTTGAGCTGTCGGCGGGCGCACCGGGTTCTCGTCCACTCT # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCACGCGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 5737844-5735743 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCL010000001.1 Saccharothrix algeriensis strain DSM 44581 Ga0451104_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5737843 29 100.0 32 ............................. GGGCGCTTGGGATCGCGACCGCGCGCAACGCG 5737782 29 96.6 33 ............................G GAGAACCGCTGACGACTGCTCCGATCGGGTAAT 5737720 29 96.6 32 ............................G GGTATGTCGCGCTCTACAACGACGCCCTGACC 5737659 29 100.0 32 ............................. CCGAACAGCGACCGGAACCAACCCACGAGCGC 5737598 29 96.6 30 ............................G GGCGGGCCTGCTCAGCGCCAGTCGGACGAG 5737539 29 100.0 31 ............................. CCACGCTCCGCTGGATCGACTACCTGGGCCG 5737479 29 100.0 32 ............................. ACGCAGACAGGCTCGCCGCCGGGTGTCACCCG 5737418 29 96.6 32 ............................G TCGGCCGAGGGGTAGAGCGTGCTCACCACGTT 5737357 29 100.0 32 ............................. CGGAGGCCCGAGGTGACCTTGCCCGCGACATC 5737296 29 96.6 32 ............................A CCCCAGGTCACCAGGACGCTGGGGCTTCTGCG 5737235 29 100.0 32 ............................. AGGCCCGCGTCGCGCACCCGCGCCGGGTCGCG 5737174 29 96.6 32 ...............A............. ACGGCGGCCAGCAGCCGCAGCGCAACCACCTC 5737113 29 93.1 32 ........T........C........... GCGGTCGGCCGCTGGTCGCTGACCACCAGGCT 5737052 29 100.0 32 ............................. TCCCCGGCGGAGGGGGTGAGCCCGACGTGCTG 5736991 29 93.1 32 ...........A................G CACCGGCGCGACAACCCCGAGCAGAAGGCCGT 5736930 29 100.0 32 ............................. CCGGCGTCGTCCACCGCGACATCGCCGTTGAT 5736869 29 96.6 32 ............................G GCCCAGCCCGCCGACGCACTCGCCAGGCTGTT G [5736847] 5736807 29 96.6 32 ............................G GTCACCCGCGTCGGCGGCACCGACGACTTGGT 5736746 29 96.6 32 ......................C...... CGGCGCATCGGGACTTCTATGTCCGGCCTCGC 5736685 29 96.6 31 .......................A..... CGGTCGGAGCGCTGTCGGTGCCCACCGACGA 5736625 29 100.0 32 ............................. TGCGTCAGCCCCTACGGCAAGTGCGGCTCCTA 5736564 29 96.6 32 .............A............... GCCGTCGCGGCCGCGCTGGCGAACTGCTCGTC 5736503 29 96.6 32 ............................G CCGCGCAGGTCGGGGGTGTCGGTGGTCATGGG 5736442 29 96.6 31 ............................T CGCCAGGTCCCTCATGCCGCCACTCCGGCAC 5736382 29 96.6 32 ............................G ACCCGCCGCACGTACGGCACCGTACGCACCCT 5736321 29 96.6 32 ............................G CTGCGCGCGCAGCGCGGCCCGGTGGCGGTGTT 5736260 29 100.0 32 ............................. CCGTCGGCCGCGTCCACGGCGGTCAAGGTCAC 5736199 29 93.1 32 .....T......................G CTGAGCGACCCGCGGATCGCCCTGCCGGAGTC 5736138 29 96.6 32 ............................G CGGCGCTGGACGCCGACACCGTCACCGCGCTG 5736077 29 93.1 32 ................T...........G TGGTGCCACCGCCCGTCCAGGTGGTCCAGGCC 5736016 29 96.6 32 ............................G GACTTGGCGATGGCGAACTACGGCCACGCCGT 5735955 29 96.6 32 .....................A....... GCCGCTGCGGAGCTGGCCGGCGAGCGCGGCGA 5735894 29 96.6 32 ........T.................... GCACCGTGCCGTCCGCGATGGCCAGCGCGATG 5735833 29 96.6 32 ..................A.......... CGCCCAAGCGGGCCTTCGACTTCAGGCACGCC 5735772 29 100.0 0 ............................. | G [5735750] ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.3 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : AGGCGCACCCGTGGAGCACGGGCAATTTCGCCACCATCCGATCGCAGAACGAGCACCAAGACGTGCTTTTCCAGCGATCAGATGACCCTCACCCGGCCAACCCTCAGCCACTCCGCCATGACAGACCTCCACAGGAGCAGGAGCGACCGGCCGCACTCGACGGCGCAGATATGCTTTTTCTTGCCCCGACGGTCACGAAACCGACGGAAGGTGAGGTACCCGATGGGGCTCACCGGGTACTGCATCAACGACCCAAAGACTCTGATCACGCAGAGACGCCCCTCAATCTCATTCGAGATCGCCTCCGCCAGGCACCACTACAGAAGACGAGCTTAGGCCGGCAGTCCGGCTACACACGCCCGGGACGTGCCCGCTCCTTGACTGCTGCGAACATCCTCCGTCCAGCCTGTCAGCACCACACCTACCTGAGCCATTAACGGAACGGTAATGAACCGAATGTAAAACACATGGTCACCCTGCAAACTGCCTGGTCAAGGAGT # Right flank : AGGTCGGGGCACAGCAGCTGAAGGTTGAGCTACCACCGCTCACGCCTGTGACCAGTCGTGCACTCCTTGCCATACTGGTCGAACTGACCACAGTCCAGGTCTTGGACGGGCCTCGCGAAGGGGGCGGCCGTGACTGCTGAAATCAGCCGAGACCCGTGGGCGACGCTGGATGGGCTGCTACGTATCGAGGTAGCCGAGGCGGTAGAGGACGGCATCGGGCCGATGGCCGGCTACGGCCGGTGCTCGACCGAGGACAACCAAGATCCGGAGACGTCACGCGGGTGGCAGTTCGGGAACGCCAGGAAGTTCGTGGAGCCGTTCGGTGGAGTGGTCACGGAGGAGTTCTTCGACGTGGGGCAGTCCCGGTCCGTGCCCTGGGACCGGCGGGAGGAGGCGTCGCGGTTGCTGGCGGCGTTGAAGAACCCGTATCGCGGGTGGAACGCCGTGGTCGTGGGCGAGGGAACCCGGTGCTGGTTCGGCAACCAGTTCTCCCTGATCGC # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.42, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 5752721-5748665 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCL010000001.1 Saccharothrix algeriensis strain DSM 44581 Ga0451104_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 5752720 29 100.0 32 ............................. AGGTGTCGTCGTGCGGGCCGCCACGGCTGGCG 5752659 29 100.0 32 ............................. CGGCCGCAGCCGCGAAGCAGCTCGACGTCAAC 5752598 29 100.0 32 ............................. CGCACCACGCTCGACGAGACCCTGATCCTGCC 5752537 29 96.6 32 ............................C CGGAGCACCGAGCTAGCGCTAAGACGCCAAGC 5752476 29 100.0 32 ............................. CCGACCGGCTCGACCGGATGGCGCAGAACGAC 5752415 29 100.0 33 ............................. GAGCTGCCGGTGCCGAGTAGTCGCAAAACCCCT 5752353 29 96.6 31 ............................C CTTCAGAAAAACGACTTGGGTTTCCGCTGCC 5752293 29 100.0 32 ............................. CATGAAGAGAGCCCAGGTGGGAGCTTTCCTTA 5752232 29 100.0 32 ............................. GACTGCGGGCCGCCGGGTCCGCGCACGCAGAC 5752171 29 96.6 32 ............................C CGTGTCGTGCTGGACGGGTGGCCGGCCAAGCG 5752110 29 96.6 32 ............................A CCGGCCTGGAGGTGCCCGAGGCGGCGATCTGG 5752049 29 96.6 32 ............................A CGTTGGGAGACAAGGCAATGAGCGGAATCCTG 5751988 29 100.0 32 ............................. TCGCCGGACATTTTCGTCGTCGGTGGCGCAAT 5751927 29 100.0 32 ............................. TGGAGCTGGCGCTCTTGTTGGTCAGCGCTCCG 5751866 29 96.6 32 ............................T TCACCGACGGCCTTCTCGGCGAGCGCGAAAAG 5751805 29 96.6 32 ............................A AGGCGAGTGGTGAGTGATGGTTAGGAAAAGGC 5751744 29 93.1 32 .............A..............C ATAGAGTCCGGCAACGGCGAGGGAGAGCATGA 5751683 29 96.6 32 ............................C CCGGTGACCCCGCGGGAGACGAGCCGGTCCCA 5751622 29 96.6 33 ............................A CGATCTGGGGTAACCACACCCGCCAGAGACGTT 5751560 29 93.1 32 .............A..............C ATAGAGTCCGGCAACGGCGAGGGAGAGCATGA 5751499 29 96.6 32 ............................C CCGGTGACCCCGCGGGAGACGAGCCGGTCCCA 5751438 29 100.0 32 ............................. GCACCCAGTTTGACCACTGAGGGCCGGAAGGG 5751377 29 96.6 32 ............................C TCGGTCAACCCCGACACGGGCACGGTGACCGT 5751316 29 100.0 32 ............................. TAGGTATAGAGCTCCACCACGGCCGGGACCAG 5751255 29 96.6 32 ............................C TCCACCGAGGCCAGGCCCAGCGCGACCGCGGC 5751194 29 100.0 32 ............................. CCGAGGTCGAGCAGCAGCGCGTCGAGCGCCAG 5751133 29 100.0 32 ............................. GGACGCGGCACGGGCGCTGGCCCTGCGGGGCG 5751072 29 100.0 33 ............................. TTGCGCCGGCCGGAGGCCCGGTGCTTGACGTAG 5751010 29 96.6 32 ............................C GGCATCCTCGACCTCGGCGAAGGCGTGCCCAA 5750949 29 100.0 32 ............................. GCCGCGCCGTGACGGGTTGGCGGCCGAACGCG 5750888 29 96.6 32 ............................C ACCGTGACCGCGTTCGGCACCGTGTCCCTCAA 5750827 29 100.0 32 ............................. CGCGACGGGATCCGGGGGCGGGACGGCGGCGG 5750766 29 96.6 32 ............................C AGCGCGCCCAGGTTGGCGTCCAGTTGCGCCAG 5750705 29 100.0 32 ............................. GTCGGTGAGGAGCTGAGACTTCGCCCAACGGG 5750644 29 96.6 32 ............................T CCGACGCCAAACCCGCCGTGGTCCAGGAGGCA 5750583 29 96.6 33 ............................C TACGCGCGGCTCGCCGTGGTGCACGGCAACCCG 5750521 29 100.0 32 ............................. AGACGACATGCAGCACCAGACCAGCCGCCTGG 5750460 29 100.0 32 ............................. ACACCACGGCCATCACCGTCGACAACGCCCGC 5750399 29 96.6 32 ............................C GAGGTTACCGGCGAGGTTTTGCGAATCGAACT 5750338 29 96.6 32 ...................T......... CGGATCGCGTTGGGCAGATCCTCCTCCAGCAT 5750277 29 96.6 32 ............................C CCGGTCGGCACGCTCACCTCGGCCGCCACCTC 5750216 29 96.6 27 ............................C GCGGACCGCGAACCCGCTGGCCCGGCC 5750160 29 100.0 32 ............................. GTGCCCCGGGCCGAGGTGAACGCCCGGATCGC 5750099 29 100.0 32 ............................. CAGGGGACGGGACGACTCGGCACGGGAAGGGC 5750038 29 96.6 32 ...................T......... AGGTGGCGGCCTGATGGGGCGTCGCGACCACG 5749977 29 100.0 32 ............................. GCGGTGTCGCGGCTGCCGGACGACGACGTGGC 5749916 29 100.0 32 ............................. TAACGCCGCCGCCGGCGGCGGTTTTTGATCTT 5749855 29 96.6 35 ............................A AACCCGCCACCGCCGCGAACCGCCCCACCGCCGCG 5749791 29 100.0 32 ............................. GTGCTGAGCCGTCCACCATCCGCTCAGCCGCC 5749730 29 100.0 32 ............................. AGCCCCGGTCCTTTGGCCGAGGACCGGGGCTC 5749669 29 96.6 32 ............................C CAGGAGCAGGCGCAGCGTGCCGGGCCAGGTGC 5749608 29 96.6 32 ............................C GTGAACGCGCCAGCTGCCATGCCGCCGAGCTG 5749547 29 100.0 32 ............................. GGCTGAAGGTCTGATGCCGACGTTCGAGCGTT 5749486 29 93.1 32 .........A........A.......... GCGGCGATCGCGGACATCGACGCCGTCGTGTC 5749425 29 96.6 32 ............................C CGTCTCGCGGCCGCCCTGGGCGGCCTGGTGGA 5749364 29 93.1 32 ............T...............C CCGATGGGGTTGGCGGCCATCGCCGCGTTGAG 5749303 29 96.6 32 ............................T GCAGCCCGACGAGGTGCTGCGGCTGCGGCAGA 5749242 29 100.0 32 ............................. GTGCGGAAGTCCAGGCGGGCCTTGGCCTCGTT 5749181 29 100.0 32 ............................. CATCACGGCGTCGAACTCCGGTTCGAGCCGAG 5749120 29 100.0 32 ............................. GGTACCGCGCTGCAGTTGGCGCAGCTGCCCGC GG [5749102] 5749057 29 96.6 32 ............T................ CGCAGCCGCTCCTCCGCCGTGGACCACCGGGT 5748996 29 96.6 32 ..................T.......... GCACCGAGGCCGCCCGTGAGGCCGCCGCCGTC 5748935 29 89.7 32 ......................CA....C ACCGCCGAGAAAGGGTTCGCGGTTGCGGGGCG 5748874 29 89.7 32 ........T..A................T TCGTTGCACCGCGCGCAGGACACGACGAAGTT 5748813 29 96.6 32 ............................T TCGTTGCACCGCGCGCAGGACACGACGAAGTT 5748752 29 100.0 29 ............................. GTGAAGAGCCAGTTCCCCCGCGCCAACCT 5748694 29 75.9 0 CAAGA....C...........A....... | T [5748687] ========== ====== ====== ====== ============================= =================================== ================== 67 29 97.4 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : GGACGCCTACCACGGCGCCACCGGCCCCACCTCCAACCCAATCCACTACCGGGACCGCTGGCTCTGGCCGTCACTGGAACGCCTACTCCAACGCAACTCGCCCTGCGACGCTGCGCCGACAAAGGACAGCACACACCCTGGACCGAACCGTCGGACGACCAGTACCTCAACGGCGATGGCGGCCTCTTCGACCGACACACCAGCCTGGCCGTCCACATCGCCTCCGACACCGCTGCCCGGCAGCCTCCTGCAGGCCGACCCGGACCCGCGGCGAGTCGGTGAAGCCTTGTCCGGACCGGACCCACTTGCCCGTGCAGGAAGACCAAGGCGGCCGGGGCCACGCCATTGCCCATGGTGAACGACCACTGCCCTCCTGAACGCCTGCAGCACCCAGTCCGTAACTTGTGCAGCGACGCCACGCCCCTTGAGCAGATTAACGAGACGGCCGTGAACCGAATGCAAAACCCATGATCACCTTGTAACCTCGCTGGTCAGAAAGT # Right flank : TCGTGGCTGACCAGTACCAACCCGGGTAGTTGCGCTGCCCCCTGTACGACGGGAACGACCGCATCGGACGCCCCAGCTCGTCCACCACCTCGGGCACGTACTTCCACAGCACCCGCCGCTCCAGGCCGTCCTCGGCGACGAACACCGCCTCGGAGCCCTCCGTGCCCGATCCCACCCGCGTCTCCCGCCCTCTCGGCACCATGCCGCGTGATCCTGCCTCGCCACCTTTGCCGAGAATCCGCCACCTACCCCGGCTGGGCGGCGGCCCCCGACGACTACCGCCCCGTCCTCCGGCCACCCTCGCAGGGGCGGCCAGTCCCCCGGCACCGCCACCTCACGTGCGAACCCGCCAGGTCACCAGCGAACCGACAATTAGGTCCCCTCCTTGCTCTTACGAGTGAATCAGGCCAGGACGGTCATGATGCAATGCGGGTCATGCCGCTCTTCGTACTGGCTTACTCTAGTAAGTCTACCTGCCGGTTTGACACCGAAGCCCCGAT # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //