Array 1 33101-34588 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIFAA010000014.1 Streptococcus dysgalactiae subsp. dysgalactiae strain SDSD20 Scaffold13_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 33101 36 100.0 30 .................................... GATAAGCGTAATGGTCCAATCATTTACAGT 33167 36 100.0 30 .................................... TTCCTTTTTTCTAAATAAATCATCAATTAT 33233 36 100.0 30 .................................... AGGTCAACCACCACAAGAAAATATTAATCA 33299 36 100.0 30 .................................... TCCGAGATTCATCTTGTGGTAAATTTCGTT 33365 36 100.0 30 .................................... AAAAAGCGATATGAAGATTATTGCTGAAAT 33431 36 100.0 30 .................................... AGTTAATCTAGTCAATCATTTAGATGGCCT 33497 36 100.0 30 .................................... AGCCCCATATCAGAACGTATCTGCCTTTAA 33563 36 100.0 30 .................................... TTCCTTTTTTCTAAATAAATCATCAATTAT 33629 36 100.0 30 .................................... CGCAGAGTTATCCAAGATTTGCAGCATTTA 33695 36 100.0 30 .................................... TCATACAGCGAACCTGGTTATCGCGGTACA 33761 36 100.0 30 .................................... ATGCTTGATGATTATGACTACGCAATGGTT 33827 36 100.0 30 .................................... ATGTGATTGTCTCTCCGTTTATCCTAATTT 33893 36 100.0 30 .................................... GTTACTTTAACGATACCGTCAATACGTTCT 33959 36 100.0 30 .................................... CAAAAAGTTAAGCAAGAAGTGGATGACGTT 34025 36 100.0 30 .................................... CTGGCAGGTTTATCACTAGGAGATGATATA 34091 36 100.0 30 .................................... CGCAGAGTTATCCAAGATTTGCAGCATTTA 34157 36 100.0 30 .................................... AAATCGCTATGGGCGAAGCCGTGCAAAAGG 34223 36 100.0 30 .................................... CCATTAGCGATTACTTATGCTTGCGAGGCT 34289 36 100.0 30 .................................... CATGGCTGACGTTCGTGCTGTGCATAACTA 34355 36 100.0 30 .................................... TGAGACGCAGTGTTACGAGGTCGCGTTGCC 34421 36 100.0 30 .................................... TTCATTTATCGCAAATTCTTTTAACATTAA 34487 36 100.0 30 .................................... TGTTTATAATTCTGTTGGACGTGATACTAT 34553 36 86.1 0 ............................TTT..TT. | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.4 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTAATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAAATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTCATTTTTGTCAATAGTGGAGCTTATCTAACAAAAGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTAAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CAACATCGTCAATGGTAACTTGAGAGAGAGGGATAAAGACCATATCCTTATGCCTTTCTATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTAAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGATTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGCTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGAACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCCGATTCAAGAGACTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 29787-28622 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIFAA010000010.1 Streptococcus dysgalactiae subsp. dysgalactiae strain SDSD20 Scaffold9_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 29786 32 100.0 34 ................................ CAGATAACCCAGTTGACTTGCGCAAGGTAGATTT 29720 32 100.0 33 ................................ CACAACCTTAATCAGAGCCGCCCGTGGACTGAT 29655 32 100.0 34 ................................ TTTTTGATTAGGGTCGTAGTTAAAAAAACCAAAG 29589 32 100.0 33 ................................ CTGATTGCTTAATTATTGAAGTATAAAAAATTC 29524 32 100.0 35 ................................ ATCTTAATGAGCGTAAAATCGAAGCCGAACTTGGC 29457 32 100.0 36 ................................ GGTCATGATTGCCCTAAAAAAGTAAAAGAATGGTGT 29389 32 100.0 34 ................................ ATTTAAATCTCCAATCTTAATTTAAGTCAAGATA 29323 32 100.0 35 ................................ AATAATATAGTTGAAGGATATCGCCTTGTTATCTT 29256 32 100.0 36 ................................ GCTTCTTCAATATTCATCTCGCATCTCCTTTAAAAC 29188 32 100.0 36 ................................ TGCATATCCACTAGCAGTCGCATAACCTGCGTCCTT 29120 32 100.0 35 ................................ TTTGCAAATGTTTGAGGCAGGTGCAGGTAGTGTTA 29053 32 100.0 35 ................................ CCTTAAAGGTTAGCTTTGAGAAGTAAATCCATACC 28986 32 100.0 36 ................................ AATATTTTCTTCCGCGTTTTTCTTAGCGCTGAAGCT 28918 32 100.0 33 ................................ TATTAGTGGCTGATATATCTTTAAAAGTAGTTG 28853 32 100.0 34 ................................ GTAAAGGCGACAGATGAGCGATATGATCCAGATT 28787 32 100.0 35 ................................ ACACAAAGTTTTGGAAGGTGTTCCAAACGTTGATG 28720 32 100.0 35 ................................ TTCGATGATCTCAACCCGAGGAGCAACGAAAGGTC 28653 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ==================================== ================== 18 32 99.5 35 GTCTCACCCTTCACGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATTTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACATGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGGGGAAACAGATAGTATTCGCTTTTATTTATTGGGTAAGAATTGGCAGAGGCGTGTGGAAACACTTGGTCGTTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAACGTTTAGTGCGACTCGAGGTTTCACAGAAGAACATTGCTTGCTCGCGCAAAAATCACTTCAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTTTGCCATACGTTTCTCTATAAACTGCGTTATTTGGCGCA # Right flank : CTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTGTCTTCTCCCCTCTCTTCCCCCTCACATATGCTATAATAAGCTTAATAAATGCATGGTAAAGGAGTTAGGATGGATAAGGTTCGGTATGGGATCGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGGTGCGCTTGGCTGGCAATGGCGAGGTTGTGGCGGTATCCAGTCGGTCGCTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATACGTCGATTGATGCCGTTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTACTGGCAGGCAAGCATGTTCTGGTGGAAAAACCATTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGATGGAGGCTCAGAAGGCTG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCACGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //