Array 1 494808-486555 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPL010000001.1 Bifidobacterium choladohabitans strain B14384H11 NODE_1_length_867400_cov_323.798726, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================= ================== 494807 32 100.0 34 ................................ CACGACGTGCTGGAACAACGGTATCCGCAGCTGA 494741 32 100.0 34 ................................ CATTGGTGCTGCCGTGGATCGTGTCGATACGCTC 494675 32 100.0 35 ................................ CCTACTGCCGCTCGGGTCTGATACTGCCGCTGCTG 494608 32 100.0 34 ................................ TGCACCATGCCGGTCATTTGATCGAGGCTGGTGG 494542 32 100.0 34 ................................ GCACTAGCAAGGGGCAAGTCTCTGCCTCAGCTCC 494476 32 100.0 34 ................................ GTGAAAATTGGATATTAAGAGGGCCATCATGCAG 494410 32 100.0 35 ................................ ATCGGGGAATTTGCCAAGATTCCGGCTGTGCAAGG 494343 32 100.0 35 ................................ TACGAGATCGTCAATCAGCTAGGCGCTGGTGGGGC 494276 32 100.0 35 ................................ CAAGCTGATCGATACCACGACTGACTTGGATCATC 494209 32 100.0 34 ................................ TGCAACACTCATGTCTGTACCTACCTCCTGTTTT 494143 32 100.0 34 ................................ ATGCAGTTGCTGGATGCCTTTTCTGATGTCCAAT 494077 32 100.0 34 ................................ TTTGTCATTGATGCCGTAAGTACGGCAAATAAAG 494011 32 100.0 35 ................................ GCCAGGGGGAAGCGCCAGGTGCTGAAATAGTCCCG 493944 32 100.0 34 ................................ TTCCCGTCAGCGGTAAGCTGTGCGCCTTGCGCCT 493878 32 100.0 33 ................................ AAACCGCTGTCCCTGATAAGGCCTGAACTGCCT 493813 32 100.0 33 ................................ ATCAGAGTCTGCGAAACAGCAAATAATTGAAGC 493748 32 100.0 33 ................................ GCCTGTGGTGGATCGAATAGCCGGTAGGACACG 493683 32 100.0 33 ................................ CAGCAAGATCATCATGTGGAGCTGATCATAAGC 493618 32 100.0 34 ................................ AATAGTCATGTACGCAAGACTTGACAAAAGCATG 493552 32 100.0 33 ................................ TACCCCTCATCCACCGGGCCACGGTCTGCTTAT 493487 32 100.0 36 ................................ ACAACATGGCCGTTCACCGTGCCCCTGTAAGAACTG 493419 32 100.0 34 ................................ CAAGCAGATCGAGAATGACCTCGCACCGCTCGGC 493353 32 100.0 34 ................................ ATGCAGACCCGGATCGCCAAAGTGAAAAAAATAG 493287 32 100.0 35 ................................ AAGGATGCGGCCGTGGACACCTGCTACGTGGGCCG 493220 32 100.0 33 ................................ GCAGATAAGATTATTAACTGGCTGCAACCAAGA 493155 32 100.0 35 ................................ CATGTCAGCTTGGCAATCTGCGATGGTTTGCGCGT 493088 32 100.0 33 ................................ AGCTCCTGGCGCTTTCCGTTGGATCGTGGACGC 493023 32 100.0 35 ................................ ATGGGGAAAATAGTACACTGTTTGTACACACCTGG 492956 32 100.0 34 ................................ GAAGCCAACCTCGAGCGGGTCCCGGCAGGCCTGG 492890 32 100.0 36 ................................ GAGAAAGTCAACCACCTGATCACTACGTACGGGCAG 492822 32 100.0 35 ................................ GTCTCAAAGGCTTGGAACCGGTTGAGTTCACGGCC 492755 32 100.0 32 ................................ CATCCTGAAAGCCTCGTAGCGTATCATCCGGG 492691 32 100.0 34 ................................ TCAGCCTCTCTTAGCTGTATTAGACGGGCCTCTT 492625 32 100.0 33 ................................ GACGGGGCAGCCTTGGCTACAGCCATCATGGGT 492560 32 100.0 33 ................................ TGCCGCTGGGGTTGCTGCCGCTGATATTGCCGC 492495 32 100.0 35 ................................ CCTTTGTCATGGCTGACGGAAAACTGTATGACCTT 492428 32 100.0 36 ................................ CCCTTAGATATTATTAATATATTTGATATATTGACT 492360 32 100.0 33 ................................ CCAGCACGTTCGCCGCCTACGCTGGGCCTTTCG 492295 32 100.0 34 ................................ TTCCCGTCGGCCGTGGTCTGCGCCTTGGCGGCCT 492229 32 100.0 34 ................................ TTATGGGCAGGCCGCTACTTGCTGAGCGATGCTT 492163 32 100.0 33 ................................ TACGCATGCCAGCAACTCAGGCTTGGCCCATTG 492098 32 100.0 36 ................................ GACCAGCCGAGCTCGTCCCAGGCCCCCTCCCTGCTG 492030 32 100.0 34 ................................ TGGGGCGACCCCAGCCACGTCCTGGACGACGAGA 491964 32 100.0 35 ................................ GTGCGGGTCGGTCGCCAGATGGGGGGTGCAGGAGA 491897 32 100.0 34 ................................ ACAATGACCCCCATGTGGAAGGACACGGACACCA 491831 32 100.0 35 ................................ AGGTGTGACTGCCAAGCGCCGACTCTACTTTTCAG 491764 32 100.0 35 ................................ AGACGGAAAACATAGAGCTTGGGCTTAACAAGAGG 491697 32 100.0 34 ................................ ATCTTCTGCGACATGAACGCCAAGACCGATAAGG 491631 32 100.0 35 ................................ TGAACATGCCGGATAAAGAACTCATACCGAATCTG 491564 32 100.0 35 ................................ CGGCGATTGGGCGACAATGCCAATCATGCCAGCCG 491497 32 100.0 35 ................................ AAAGCCACGTTTGCGCTGAACGACCAACTGCTCAC 491430 32 100.0 35 ................................ CCCCTGGTGCCTGCCGGGGGGTCCCTTTCGGTGCA 491363 32 100.0 33 ................................ CAGACCGCATCAAGCGGGGACCGCATCCAGCTG 491298 32 100.0 36 ................................ TGGTGCATCTGCGACGGCAAGGGCCGTGAGGATCTG 491230 32 100.0 34 ................................ GCCAAGGACTCGGACCGTCAGGAGTCTCGGGCTG 491164 32 100.0 34 ................................ AGGTCGGCAAGGTCGATCTGATCGAGCTTGGTCC 491098 32 100.0 34 ................................ ACGAAGGCATCGCAGACTTGTCGAAGGTGCGGCT 491032 32 100.0 34 ................................ ATCGGCTTTTGCCTCCTACTCTGCGTATCTCAAA 490966 32 100.0 35 ................................ GTCGTCCTCCGGACTGGAACCGGACACCGGCCATG 490899 32 100.0 34 ................................ AGTGTGGATGACGGTTACATCCGCAGTTTGGATT 490833 32 96.9 35 ..........G..................... TCGACCTGGGCGGGTTGGTCGGGCGGGAGCGTGGT 490766 32 100.0 33 ................................ ATCGACAACACCCGCGGCTATATCGGCAAGGGT 490701 32 100.0 35 ................................ CTGTGCCGCTAGTAAAAACCGGCTGACCCGTAATG 490634 32 100.0 34 ................................ AAGGCTCTGTAGCAGCTCTCGCCGGGGCTTTTAT 490568 32 100.0 35 ................................ ACTCCGTCGACCACGGGCATCGCATAGAAGCTGCC 490501 32 100.0 34 ................................ ATGCCCGGTCTCAGGAGCTTGGCAAGCCAAAGGT 490435 32 100.0 33 ................................ CTGGTTAGCATACTGTTTAAGCCTTATAAGCTA 490370 32 100.0 37 ................................ ACCGTGACCGCCCAATTCAAACCCAAACAACTCACAG 490301 32 100.0 35 ................................ TGTGACATGGCCTCATACAGCTTATCCATGATCGG 490234 32 100.0 33 ................................ CCCCTGTGATTGGCTTCATGGGGGCGAACCCTT 490169 32 100.0 34 ................................ AAAATAGTTCGCATAACGGCTGATGAGTGTCATT 490103 32 100.0 36 ................................ GGTCACGGCCCAGTCCCAGCCGGCACCCTTGTCCAG 490035 32 100.0 34 ................................ ACCTATCCAGCCGCCCACCCGGGCGGCTTTTTTC 489969 32 100.0 33 ................................ ATTCAGAGCGGCAAACATATCTGGACGGCCGAG 489904 32 100.0 35 ................................ CACGCGGGGTCGACGGTGACGGGCTGCAGCCTTAC 489837 32 100.0 49 ................................ GGCCTGGCCTGGACATCCACCGTGTGCGGCCTGCCTGTGCGGCCTGCCG 489756 32 100.0 34 ................................ TCAGACGGACCGGCACGGAGCGGGTGACCCTGGT 489690 32 100.0 34 ................................ CTTGCCGACGGCGGCCAGGTGGCTGACCTGATGC 489624 32 100.0 34 ................................ CGCTGGCTGTACGATAGCGCGATCCGCCCAGTCT 489558 32 100.0 34 ................................ CTCGACAGTCCATGGGGATGGGTCGTACTAGGCA 489492 32 100.0 33 ................................ TCTGGCATTTGGAACGGGATAGTGGCGTTTGTT 489427 32 100.0 34 ................................ AGACTGGCGAGGATGGCGGTATAGCAGCCATGGC 489361 32 100.0 35 ................................ CGATGTCGAACCCTATGACCGGCTGGCGTGACAGT 489294 32 100.0 34 ................................ AATCTCAACCGGTTTAAGGCCATGACCAAGCCCG 489228 32 100.0 34 ................................ GGTGTGATCGGTGTCGCTCAAGCTATTTTCGCTG 489162 32 100.0 35 ................................ CTGCTCCTGGTCCAGGGCCAGGGCGCGTGCCACGA 489095 32 100.0 33 ................................ GTCATCCATAGGGTAGGAGGCAAGTAATGAACA 489030 32 100.0 34 ................................ CCGTCGTTTTCCGGGGGGCCGATGGGCGAGCGGT 488964 32 100.0 34 ................................ GATGATTTCGCCAACTACTTGTGGCAGCACCCGA 488898 32 100.0 34 ................................ ACAATCCCGACGACAATAACAAGTCTGACGGGGA 488832 32 100.0 36 ................................ CTGTTTGTTGGGCGTGCTTTGCTAGCGCGTCCAAAG 488764 32 100.0 35 ................................ GGGCACGCTGAACGCCCGCCGTCCGGTCTCCACGT 488697 32 100.0 34 ................................ ATCGTATCCGCAGCAATAACTAGCATTACACTGC 488631 32 100.0 34 ................................ ATCCCAATGGGTGCCCGGATTGGTGTACCGCCAT 488565 32 100.0 34 ................................ CAGCCAAGAAACGCACCCGCGCATGGCTGGGGTC 488499 32 100.0 34 ................................ AGAAAGAACACGTTTAGGGAAAGGTAATACGATG 488433 32 100.0 35 ................................ CACCAGGCGATGCTCATCCCGTCCACATCGCCCAT 488366 32 100.0 35 ................................ TCGACCACGCCCTTGGTGGTCACATAGCCCATCTG 488299 32 100.0 34 ................................ CAAACATTGGTGACTATGTTGATGATGACACCCA 488233 32 100.0 34 ................................ GCCAACTACCTCTGGGCGCACCCAACTAACGCTC 488167 32 100.0 34 ................................ ACATACGGGCTCAAAGAGACCGGTAAGCTGAGAA 488101 32 100.0 34 ................................ TTGTCATGGTTGATGGGAAACTCTATGACCTGAT 488035 32 100.0 33 ................................ ATGAGCGACCCGGGAGGGACGATCTCCCGGCTG 487970 32 100.0 33 ................................ GCCATGAGTACGACGGTGCCGAGTGGTGGCAGT 487905 32 100.0 35 ................................ TCCGCCATGGGGCAGAAGGTGGCCCTGGGCGTGGG 487838 32 100.0 35 ................................ GCCCTACAGGACTTGCCCAACCGTTTGATCCAAAC 487771 32 100.0 34 ................................ TCAACGGTGGCGTTGGACCCTTGGGGCAGGGTGG 487705 32 100.0 34 ................................ TGCAACGCCTGCGGCAGGCCCTGGGTCGACATGT 487639 32 100.0 33 ................................ CACTCGGTCCAGCTGTTGAACAAGCCCCCGCTG 487574 32 100.0 34 ................................ CAGGCCTGGTAGTTGGTGCGCTGGTGGATGCCCT 487508 32 96.9 34 .............T.................. TTGCCGCTCTTTGGCTGGTTCGGTGCCGGTGCCG 487442 32 100.0 34 ................................ ATCGACTGGTTCAAAGGCGCATGGGACTCGGTTG 487376 32 100.0 34 ................................ TCGGTGGCGGTCAGGTACAGGCCCGACTCCTCCA 487310 32 100.0 33 ................................ GAGATGGACGAGATGACCTACATGCAGATCAGC 487245 32 100.0 35 ................................ GCCGGAGACCCCTACCCGGCCGGACTGCCCCACCT 487178 32 100.0 35 ................................ GGCGGCTCCTGGCCCACCGTTGCCAGGCTCAACGG 487111 32 100.0 34 ................................ GCAAAGCATGCGGCCCAGGCCAAGGCCGCGCAGG 487045 32 100.0 33 ................................ TGTGAGACAGAAAACCTATGTTGAACTGGATGC 486980 32 96.9 34 .......T........................ ACCTGCCTAATCACGCTCAGCCGGAGCTCAGGCA 486914 32 96.9 34 .............T.................. AAGAACAGCCTCAAGAAAATCTCCCAGCCATGGC 486848 32 93.8 33 ............G.A................. CCCGGTTGGATGAGTGAGTTACAGTATGTTTCA 486783 32 96.9 34 ....T........................... TGCTGCAGGACCGTCTCGGTCAGCGAGGTGCGGA 486717 32 96.9 34 ..........C..................... ACAGGGCCTTGCAATACAGCGTGCCAGTTGTGTT 486651 31 90.6 35 .....C..........-....C.......... GGATCAAGAAAGGGCTCAAGACATGACTTTCGTGG 486585 31 75.0 0 ..T....T.....-....TT....T.G.G... | ========== ====== ====== ====== ================================ ================================================= ================== 125 32 99.5 34 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : TGAGGCGCCATATCCCTGTTGATCAAGTGATGATGCTATAGAATCATGGGACTTTGGTTATATGATTTTGATTGTCTTGTATTGTTTGAGTCACTGAAATTAGATGCTGGTTAAGTGGTTGGTGTAATTCTGTAAACAGTGCATTATGCTGACTGATGTTCTGGACCATAGTTGATGCGAAACTCTAGCAATCATGTATTCGTCTGATCCTTCGCGCTGCAGATCGTTGCTTTATGACAACATTCGATCTACATTTCGCATGTTTTGTGGTCAGTGTTCTTTTCAAAGTTACAAGCGGAAAGCTATAGGTCCGAAAAAAGCTAGAATTTTAGTGAAACGGATGAACGGTTGTTTGATAACTGAATAGTGATGTTATCGACTTAAAGCACTGTTTCAATTCCGCGACTAGTAATAGAAACTAGGTAGTTGGGTTAGGCTTTTGGAAGTCGTCGGCCATTAAAGGCCGACCATATATTGGCCATTAGATGTATCATTGTGCT # Right flank : ACCACTACGAATGGTTCTCTATCTGCGGTAAATGCGTTACCTCTTTCGCGGAAGCCTAAATTGGAAAACTGCTCGCGTTACTTTGAATTACCCAGACAGCACTTTTCCTATCGGAACATGCATTAAATCAGTTCTTCCGCCAGAACACTGCCATGAAGTGTACTCCTACTAAACAGGATTATGAGTTGCTGCTTCGGCATAGTGTCACTCGTTTTTATGCCATTTGCTTGTTCCTAGCCGCGAGAGTGCTGTGTTTTCCCGCATCTGCGGGAGTGATACCACGGGTCATCGGATGATGCCCTTCAGGAACACAAATATGAGAGGAGACGAATAGCTATGGATGAGGATTTCATGAGGAAAATGGCATCCAAGGATAAGGCCTGCACCACTTATGACCATATTCCTGATGACCGGATCAGCAGTTATGCGTCAAGATATCCCATCACTGATGATATGGATGAAACCGAACGTCGGGTTTGGGATTCCCTGGATAATGAGGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //