Array 1 26226-25774 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021285.1 Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26225 28 89.3 32 C.....A...C................. TGCTGGATTGTGCCCCAAAGCAAACAGAGACA CAG,C [26214,26221] 26161 28 100.0 32 ............................ AATACGTGGTTATGACCTCATCTAAAGACGTA 26101 28 100.0 32 ............................ ACATGAAGATAAAAAAACGGGCAAAAAGACCT 26041 28 100.0 32 ............................ AAATGCCGACAACGGCGCTTAAAAGGTCTTCT 25981 28 100.0 32 ............................ AGTGAAGCTATTTTTAACTGGGATAACATGAT 25921 28 100.0 32 ............................ TTTTGCCGCTCTTTGAGAGATATTGCTGTTAA 25861 28 100.0 32 ............................ GCGATATTTTTAATCAAGAATTCGAAACATAT 25801 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTTTATTATAATCACCAAACAGATACAAACCTAAAATGGTATCGTCACGAACAATAGTACGACTACCTAAGCCTGCGCTAAGAAGTCCTGCATCATCATCTCCGTATTTTCCTGTAAGATCCAAAAAGAAAGATTGGTTACTATTTCCCATTAAGGGAATCATTGCATCAGCTTCACCAAAAAATCGATTTCCGGCATTACCCCATGCGAAGACACGAGGAGGTAATTTACTTTCTTGTGATCCAATACTTACAGAGGGAAATCCAAAAATAGATGCTACTGAGATGCAAGTTAATTTTTTAATGACTTTATTCATGAACAGCCTCTCCTTGATGCCCATATCTCTATCCGACCATTATTACATTAATAATGTGCTGGATCACTGTTTGTTAAGTTATAGTATCAAGAGCTATTATTCTTTTAACAATAACAACCCCTGTTTTGATTCAAAAAAAACCGAATTGTTAACTCTTTCCTGAAATCCCACTTTTTGTCAGTT # Right flank : TTATTATGTTAAAGGTGTTAGCACGCTACGCAGCAAGGTCGGACCAAGGCCTGACCTTGTTTTGATTAGGAAAGTCTAATCATGACTATAATCTCCATTTCTCTTTATGGAGTACAGCAACCGTTAGTCAAATCTATAAATAACCTAAACAAATAAAAATAAACTCTCTAGTTCCATGGAAATGAGTGTAATTGGATCGAAGTCAAAATAAATTGTGAAGTCTGATTACTGAGAAAATTAAATTTAGTTGATGAGTATCTATTGAATCATGAGAATAATCTAATGGTGTACGTTAATTATACACGTATGCTAAAAATTACTACCTGATGAGCTAGGATATTCTCTACCGCGTTGTTTGAATCACACTGAGTCAATCGTAAATTTATTTAGCATTACTGAGAATTATTTAATCCTCAAAAACTCAATAATAAATTTAGATATTTCACAAAATCATACGGTGAATGCTCTCCTGGTTTCGTCAGTTACTGAAATAGTGGTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 36292-33499 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021285.1 Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36291 28 100.0 32 ............................ TGATAGAAACCTTGATTGGTCATGTATTAATG 36231 28 100.0 32 ............................ CAAAAAAGAAAATGCAGCTTTAGTAATGATAG 36171 28 100.0 32 ............................ GTATGGACGACTTGCCCTTGAACGAGTACGGC 36111 28 100.0 32 ............................ GTCATCGTACGGCATAAGATCAGTAGACAATA 36051 28 100.0 32 ............................ AGATAAACCAGCCTCAAGTGCTTTCAGTAAAC 35991 28 100.0 32 ............................ AACAGCTCCGTACACGTTAGAGTTACTGTCTC 35931 28 100.0 32 ............................ AGATAAAATTGTCAATACTTTATATTTAAATT 35871 28 100.0 32 ............................ AAAACAATATAGATGTACTGTCAATCATAATT 35811 28 100.0 33 ............................ CTAGTATGTAACGTTAAACCACTGATTTTATAC 35750 28 100.0 32 ............................ TGAACGAGTACGGCGAACCAAGATATTATTGC 35690 28 100.0 32 ............................ AGTGACATATTAGAAACCATGGCTCCAAAGCT 35630 28 100.0 32 ............................ TTCAAATTTGCGTTATAGGGCATTTTCTTTTT 35570 28 100.0 33 ............................ AATTCAGCATAAAAAGCATCTTTAACGTTTTGC 35509 28 100.0 32 ............................ AAAAAGAACATAGCCAGTTTACTAGGGCTTAG 35449 28 100.0 32 ............................ ACATATACCAGCAGTACCAGCAGCATTTGATG 35389 28 100.0 32 ............................ TATCAGACTTAAACGAATCTCACTATAAAACA 35329 28 100.0 32 ............................ GGCGTATAATTATCTCGTATGTATTGCTCTAA 35269 28 100.0 32 ............................ AAAATTGTTTTTCTGCTCAAGAGATGGGGAAC 35209 28 100.0 32 ............................ TATGATGACGGCCTCCACGGAGAACTTGTTAT 35149 28 100.0 32 ............................ ATCACGAATGCACCCAAATTGCCTGTTAGTTA 35089 28 100.0 32 ............................ AATTGAACAGATAGTTGAAGAATCAGTAAAAG 35029 28 100.0 32 ............................ TTCTTAGTCCCTTTACACGCTGGGCATCTAAT 34969 28 100.0 32 ............................ TTGAGAGTTGCTCTTATGGCCTCTTTTGTAGA 34909 28 100.0 32 ............................ TAATTCATGAACGATAGGGTAGGTACTAGCAT 34849 28 100.0 32 ............................ TCATTTTGAACTGTAAATAAACCTTTCGTTAA 34789 28 100.0 32 ............................ ACTGTGGTGAGTATGGTGAGAAGTACGGAAGA 34729 28 100.0 32 ............................ ATGTGCACCTACACCGTGAATGTGCCGGTATT 34669 28 100.0 32 ............................ TCTGAGCTTGAGCAGCTTGAAAAACAAATACA 34609 28 100.0 32 ............................ AAAACGTGCTCCACCATTTAGTTGACGGGTCA 34549 28 100.0 32 ............................ GCTTGTGCCATGCGCTTAACTATTGCCCTTTC 34489 28 100.0 32 ............................ GATATGTGAAGAAGCAAAGCAAGTAATTGCTA 34429 28 100.0 32 ............................ TACTAGCCCTTAGCTATGACGAGCTCGACCAG 34369 28 100.0 32 ............................ GATTGAGATTTCAGTCGAATATATTTTACCTG 34309 28 100.0 32 ............................ TGCCCTGAACTTAGATTAATAATTACTCCATG 34249 28 100.0 32 ............................ GCTTGCACTTAGTAGGTAACGCTATCGTCAAT 34189 28 100.0 32 ............................ TATAAAATTTAATTCAGCGTCATATACCGGCG 34129 28 100.0 32 ............................ TCAGCAGCAAGACCCGGGGTCTGCAACTCAAG 34069 28 100.0 32 ............................ AAAGCCGCCGACATACGCCCTAAACTTGGTGT 34009 28 100.0 32 ............................ TATCTATTTAGATATAGCCTTCTTTCTGTAGA 33949 28 100.0 32 ............................ AGCAGTTCCAGCAGCATTTGATGGCTTATAAG 33889 28 100.0 32 ............................ ACAAGAGGCGCAACTAAACCTAACACAAATGT 33829 28 100.0 32 ............................ GGAATTTGTCGGCCGCATAGACCGCTTTTATC 33769 28 96.4 32 ...............A............ TTAACAGTTAATCTTTCAACATCAGATAAACT 33709 28 100.0 32 ............................ TTACCTCATGACTTGCTTTCTAACCTTTGCGC 33649 28 100.0 32 ............................ TGTCCGCCGTGTCACCGCCTCCGGAACCTAAC 33589 28 100.0 32 ............................ CAATTCGAACAAAACATAATCCTCAGGATTCT 33529 28 85.7 0 .................GG....G...G | G,TT [33504,33507] ========== ====== ====== ====== ============================ ================================= ================== 47 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACTCCTTGACAGAAGATGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAAGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAACGGGCAAAGGCACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAATTCCTGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAGAACAAGGTAAATTCCTTGAGTTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGCTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTATAACTATTTTTTTAAGATTTAGAGCAGA # Right flank : AACTGACAAAAAAGGGGATTTCAAGATTGAGCCCATCAATCCGTGCAATTTTATTGCAAATAATTAAAAATGTACGCGTTACTTAAGTAACTTTCCAAAAATGTTGTTTTAAATGTTTTTCCAGTTCCTCAACCATTGCTGCAATATTAATATCACCATTACTTTTTTTAAAACTGTACTTTCCGGTAAAGGCAATATGCGCCCAAGCAATAGGTGATATTCTAATAAACTCATCAATAATGTCTTGGCTAACCCCTTCTTTAAGCATTTTTTCATAAATAGTATTCAAAATAATGCCGTTGTAGGCAATGATACAGTTTGCAACAAGTCTTACTGCGTGTGCGCTGACTCGATTGTTAACAATTTTCTTTCCCTTGAAGACCCCACGATAAACCTTCCTAATGAGACCTTGCAATTGGTGATACGCCTCGGTCCGATTTCTTGCCGCACGAATGGCTTTCCTAAGCGCCATGTTATCTATTAGATTTAATACATGCATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //