Array 1 7486-5402 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJOE01000011.1 Listeria monocytogenes strain NRRL B-33022 PROKKA_contig000011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7485 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 7419 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 7353 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 7287 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 7221 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 7154 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 7088 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 7022 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 6956 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 6890 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 6824 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 6758 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 6692 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 6626 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 6560 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 6494 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 6428 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 6362 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 6296 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 6230 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 6164 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 6098 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 6031 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 5965 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 5899 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 5833 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 5767 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 5701 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 5635 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 5569 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 5503 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 5437 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 281406-282146 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJOE01000007.1 Listeria monocytogenes strain NRRL B-33022 PROKKA_contig000007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 281406 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 281471 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 281536 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 281600 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 281666 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 281730 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 281793 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 281857 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 281922 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 281986 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 282052 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [282075] 282118 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //