Array 1 214459-215758 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBEJ01000009.1 Ligilactobacillus salivarius strain JCM 1040 JCM1040_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 214459 36 100.0 36 .................................... TGGTTAATGTTTCCATTGGTTTGTTTATTGTGTTGT 214531 36 100.0 40 .................................... CGAGTGTCTAGACTATGCTTGTCTAGGCTCTTCCGTTTTT 214607 36 100.0 35 .................................... AACATTGAAGAAACAATATTTCAATATTAAATTTT 214678 36 100.0 38 .................................... TTTTGACTGTATCGCACATGATTCGATACTCCTATTGC 214752 36 100.0 33 .................................... TGAAAATTGAATTATGATTCAAGTTGTAATACT 214821 36 100.0 38 .................................... AGGTATTAAGAGGTTGTATGAAACTACTCAAGTTTTGT 214895 36 100.0 36 .................................... ATTTTCAAAGAACGTACTTGACCATCCATAGACCCT 214967 36 100.0 38 .................................... TAATTTACCTCGATTCTTTATATTTCCTTGACTTTTAC 215041 36 100.0 42 .................................... TGTTTCGTTCCCAGCTTGCCTGGTATCCAATCGAAGGTTATC 215119 36 100.0 35 .................................... ATGAATTTTGATAACAGTAAGGAAGAAGATATAGA 215190 36 100.0 40 .................................... TTGGTACATTGATGAAATATACGAACAAGCAACAGACCAA 215266 36 100.0 38 .................................... TTACTTCATATAATGTACTCATAATCAAGTACCTCCTT 215340 36 100.0 42 .................................... TACTTATAATCTAATATAATTGTTTGTCTATCGTTGTAATAG 215418 36 100.0 37 .................................... ACGACAGCCTAATACCAGAGCTACTCCTTTCATTTAA 215491 36 100.0 42 .................................... TTCGTTCATTAGGTTTATCAATCTTTCATCAAATTTCATTTT 215569 36 97.2 41 ...............T.................... TTACCACCAGAAAAAGCAACTAAGATATTATCAAATTCATT 215646 36 97.2 40 .....................G.............. CCTGCTGTTGTTAGTTCGATCATTTTTCTTCATCCTTTCG 215722 35 88.9 0 ............................-....TCT | TT [215752] ========== ====== ====== ====== ==================================== ========================================== ================== 18 36 99.1 38 AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Left flank : ACAGGATTGAAATTACCGACTTTCATTGAGGAAGGAAGATAAGTATGATGCTATTAGTATGTTTTGATTTACCAAGAGACACGAAAGAGAATAGAAAAGAAGCAACTAAATATCATAAGAAATTAGTAGAATTAGGTTTCACAATGAAGCAATTTAGTGTGTATGAAAGAGAAGTAAGACAAAATTCTACTAGAGATAGAGTAATTAAAGTGTTAAAAGATAGATTACCTAAACAGGTGCAATTACTTTATATTTACTTCCTAACGAAGTAAATGATTCACAAATAACGATTTTAGGAAGTGAGTCTATAAAGAAAACTGTTAGGAAACCTCAATTTATTGTGTTATAATACACTTACACTGCTGTAAGAAACAGTAGTACAAATAAAAACTTGTCTGAATTTTGACCAAATAATACTTATTAATTTAACCTATTGCCCGTTTAGGGTACCATTAAAAATGTCAATAATTGTTGATATATCAACTAATTGATCAAAGAGT # Right flank : TAATTAAAGTGATAAGAAGGAGAGTAAAAGTTAGAAAAAATAATATATAATATAGGTAATTAATTAGAAAGTGGTGTAATTATGACAACATTAATATCATGTATTGGTGATACAGATCCTATAAGAAATAGGCATGATGGAGCTTTATTGCATTTAGCAAGAGTATTTCGCCCTGAAAAAATATTATTAATATACTCTGAGCGTGCTTTATTGAAAGAGAATAATATCTTATTAGCGTTAAATTCTATAGAAGGATATAGTCCTGTAATAAAAAAAGATGAGAGACTTATTTCCGATAGTGAAGTATTTATTTTCGACAAAATATATGAAATATTAAATAATGTAGTCTTAAAGTATTCTAGAGATAATGAGGATTTAATTTTGAATTTATCTAGTGGAACTCCACAAATGAAGTCAGCTTTATTTACTATTAATAGATTGAATGATATTAATGTTAGAGCCTATCAAGTAATAACACCTAGTCATTCTTCAAATGAAGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 42650-43724 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBEJ01000003.1 Ligilactobacillus salivarius strain JCM 1040 JCM1040_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================ ================== 42650 36 100.0 30 .................................... TATTGAATGGTTCGCCTGAAAATGTAAACG 42716 36 100.0 30 .................................... GAAAAAGGTCCACAAAACGTAGAAAGAACA 42782 36 100.0 30 .................................... ATACTGCTAAGGGTTTAGGCTCATTCATTA 42848 36 100.0 30 .................................... TAATTCCTGCCATTTGTGCCTTACTCTTAG 42914 36 100.0 30 .................................... CTAATTGTTGAAACCTATTTATACCACCAA 42980 36 100.0 30 .................................... GATTGAATGATCATAAGCACTCCACAACGA 43046 36 100.0 30 .................................... ATTAAGGGCATTGTTAATCACATTGCGTAA 43112 36 100.0 30 .................................... CTTACAACATCTTCATAGGTTGATCCATCT 43178 36 100.0 30 .................................... ACCACAATCGCAAAGGCTTTGAACAGGAGT 43244 36 100.0 30 .................................... AACTGGCAAGAAAACAACTTTCAAGCATAT 43310 36 100.0 30 .................................... TAGCAAAGGAAAGATATTCCCCTGAACCAC 43376 36 100.0 30 .................................... CACCAACCATTTAAGCGTGTATCGTAACCG 43442 36 100.0 30 .................................... AACAACACAAGTAACTGATGTAAAGGACAA 43508 36 97.2 29 ..................................A. GGTTCTGAGCCTAGTTAGAATGAATAGGT 43573 36 83.3 80 ..........A..A......T......A....T.T. TTGACTTTGTCTCCACAGTTATATATTCTAATTTCAGAATATATTAATTGACTATTTTAGAGTGGTTAGTTTAGGTATTA 43689 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================ ================== 16 36 97.6 33 GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTGATCAAAAAGATTATTGAAGACATCACGGATGATGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCCTTACAAGTAGATTATGATAATGATTTAACAAGACTATTCAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTGAACCTTGTTAAGGTGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATAGTTAAATTTTGATTATAAAGTAACT # Right flank : CTAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATAAGAAATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTGGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGGGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAGGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAATGAAC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //