Array 1 5527-4882 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUSU01000013.1 Clostridioides difficile strain CD30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 5526 29 100.0 37 ............................. TTTAAAACCTCATGAGAGGTAAGGGGATGATAAGTGT 5460 29 100.0 37 ............................. TGTATCTACCTCGGTTCACATTTTTTCTTTTAATAGC 5394 29 100.0 37 ............................. TTAGTTCCACTGTAAAAATATATCATTAAAAAACCTC 5328 29 100.0 36 ............................. CCATGCTCCACCATCTGCTTCATATAATCCTGCTGC 5263 29 100.0 37 ............................. TATTTTCATTTTTGAGAGTTACAAAACACTTCAACAA 5197 29 100.0 0 ............................. - Deletion [5169] 5168 23 69.0 38 ------..........G...T.......G ATAGCAACTGGTAGCAACATAGCACTTATACTTGTAGC 5107 29 86.2 38 A...............G...T.......G CCCATAGAACCAACATATTTAAATGTTTCACCCATTAG 5040 29 82.8 36 A..............AG...T.......G AACTCTGCAAAGCTAGATTTTAAGTTATCAAAAACT 4975 29 82.8 36 A..............AGA..T........ TCTTTAAAAGCATTGAAAGCATCACTCATACATTGT 4910 29 79.3 0 ...............AG....T.CA...C | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 90.9 33 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCAACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAAATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTATGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : TAAATAAACAAAGGAAGCACTTACTTTTTGGTAGGTGCTTTTATTTTGCTCAAATTGGTCGGTTGAGTAAAATAATTAGGAAAAATTGGTATAAGTAATTGACTTTTGTTGCCACATAAATTATAATATATTTGTAGCAACGAAAGTGAGGTGAAATAAATGCCACAAAAAAAGATGGGTCGTCCAACAGAAAGTGTAAAAGATACTATGATTAGAGTAAGAGCTGACAAAGATACTATTGATAAGTTAGATGAATGTGTGAATTTATTAGATAGTAATCGTTCTGAAATAATAAGAAAAGGTATAGACAAAATATATGATGACCTAAAAAAATAACAAAAATAGAGTGTTCGCCCGACCAAGTTTGAACACTCTATTTAAACACCAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAATTTAAGGAGGAATTTACTATGAATGAATTAATGAATTTTGAAGGAAAAGAGATTGAA # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:85.19%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 204508-204734 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUSU01000002.1 Clostridioides difficile strain CD30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 204508 29 100.0 38 ............................. TTTTTAAGCAAATTTACATCTTTTTAGGTAAATAACAT 204575 29 100.0 37 ............................. TCTGTAAACTGCCTTTTCTCTATTTGTTTCAGTTACT 204641 29 100.0 36 ............................. AGCTTTTTAGCTTCGTCTACTACTTTATAAGCAAAG 204706 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 100.0 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TGTATCAAAAAATTATCCTCCCAACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGTATACTAGCGAGTCTATCTGCTAGTTTAATAGTCTATATAACTAGCAAGTTATTTGGAAAACGTAAAAAACCACTCAAAGCTGCAACTAAGAGTGGTTGGGAGTTTGATTTTAAAATCAAATTCCGTAGATTTAAATAATTACAAATTGTTTAAATTATGAACTCCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATGTTTATGATATAATAAAAGTATATTATTTTTGCAGTGAGCGATATTTGTATTAAAATATGCTTTAACCGTTGAAATGTAAGGCATTGAGAATGTGTGATAAGTGTTATCAATTGCACTACTTGTGCTTCACTGCAAATTTAAGAGAGTTATGTAAGTGTAAGTATTGAAAATACTTAGTTTATTTTTGG # Right flank : TAAGAAATTGTTATGATAATGACTCTATAGAAAATTTCTTTGGTTATCTTAAAAGTGAAGAGATCTACTTAAATTTGTATACTTCAAGAAATGATTTAGAAACTGCTGTTCATAGCTATATACGTTGGTATAACTATGATAGATTACAATCTAAATTAAATAGCAGCACACCTGTAGAATATAAGCGTGCTGCTTAAAAATGACTATCTTATTAAAAACTGTCTACTAATTAGGGTTCAGTTCACATATAAGTGCTACCTTTTATTTTGTAGATAAAGTGTTTTACTGACATAAGTATTAAATTTACATTTTAAAATTATTTAAATATCAATAAATAATTAAATAGAAATTATTATAATTAACAATAGATTCCTTTTTCAAAGAAGTCTTTAATTTCATCAAGGTTATCAGTTTTTCCAAGTGCTAAGATAAGTTTTATTCTAGCTTTTTGACCTGGCAAGTCTCCACCAAATATACAGCCAAGATTTTTTAAATCTCTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 63004-61792 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUSU01000012.1 Clostridioides difficile strain CD30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 63003 29 100.0 36 ............................. TTTAAAACCTCATGAGAGGTAAGGGGATGATAAGTG 62938 29 100.0 37 ............................. TTAAGTGATAGAATTTCGTCTCAATTGAGCAAAGAAT 62872 29 100.0 38 ............................. AAAAACAAAAAATCCAATTTTAAATTATTATTTTGATT 62805 29 100.0 38 ............................. TCAACTAAAGAATCAATATTTTTCAAATTAACTCTAAC 62738 29 100.0 37 ............................. TGTCATTTTTTCACACCTCTCTTATTTATATAATAAC 62672 29 100.0 37 ............................. GGTGTATTTATGTTGGCAAGAAGCGTTGATGAAATGA 62606 29 100.0 36 ............................. CTGAGTAACAAGGATTTTTATTAAAAGTATTATCAG 62541 29 100.0 36 ............................. TATCTTTAGAATAACAGTATCCATCATAATTATTTG 62476 29 100.0 37 ............................. TCGGTTAAATCACGAAGTATTTCGTTTACTGATTCAG 62410 29 100.0 37 ............................. CTTCTCAACATTATATATTGAAAATAATCTTGTCACT 62344 29 100.0 37 ............................. CCCATTTATTTACATTGTATCTAAAGAATATTTTAGT 62278 29 100.0 37 ............................. GCTGGTAAGTTTGATTTTATATCATGGTAGTAAGCAG 62212 29 100.0 36 ............................. TTAAATCCAAATTGTTTACCTGCAACAGAAATGTCT 62147 29 100.0 37 ............................. GTATAAATTGAAATCAGAAGGTTTTATTATTGATTTA 62081 29 100.0 35 ............................. CTATTAACTTTAGGTATTTTGTAAGATTTTTCCTC 62017 29 100.0 37 ............................. CATGAACATTCTCTATAATATGTGTGTTCTTCAACTA 61951 29 100.0 37 ............................. GCTGTATTTATAATTTTTTATATTTGAGTAAATTAGC 61885 29 100.0 36 ............................. TTTATACCAACAATTTTCTTCTCCATACTTTTCCAT 61820 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 19 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TACTATTATATATAACTGAATATCTAAGTGACATTTAAGAAAAATATGATGCTTACTGACATAAAACTGAACGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTCTTTATCCATATCGTCTAAAATAAGAAAATATCTATTCATAGTTATTTTTATATCAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAACTATTAGAATAGATAATATAGTAAGCATTTACAGATATGCAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATATAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTCTTATTGATTAAAATATAAGAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATAACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATAAATATTCATACTATAATTTAGATATAAGGAGATGTCCTTATAAACTTAAAGGGTTTGTACTATTTGTACTATAAGTATTGATAATCTTAAAGTATATATACTATTTGTATTTGTTGAAAAAGATTTTAATAGTAATACAATATTAAACAACACAAATATCAAAATTTAATATTGATATAGGTATAAACATTATAAAAACAACTGAAAATAAAAATCAAGAAATATTTAATGCTACTACAATAGGAACTAGAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 73317-76369 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUSU01000007.1 Clostridioides difficile strain CD30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 73317 29 100.0 37 ............................. CAACTAAGCAACTCATCATTATAATGTTTACTAACTA 73383 29 100.0 37 ............................. CTATTTTTTAAATGTATTAAAAGAAAATATCAAAACT 73449 29 100.0 37 ............................. AAATGTCCGAAATGTAATAAATGTAATAAAATTCAAA 73515 29 100.0 35 ............................. ACGGGCAAAGAAGGATTCTCAACATCAGGAACTGT 73579 29 100.0 36 ............................. TATATCAAAACTAGAAAATCAAGAGTACAAAGATAT 73644 29 100.0 38 ............................. TTCAATAAAATTTTAGCATAAATTTGTGATGAATTCTG 73711 29 100.0 35 ............................. ATCTTTAATACAAAGTATAACACTTTATTATTATG 73775 29 100.0 36 ............................. AAGTAAAGATGATATTGGAGATGATGAGTTGAAAAT 73840 29 100.0 36 ............................. CCTTATGACCTACCGAGCGTTGGAACTGTTACAGTT 73905 29 100.0 38 ............................. TCAATAATTAATTTGAAAAGACAATTAATTATTTCAGT 73972 29 100.0 37 ............................. TTTTTTGTTTTATAACAATATCTTTCTTTGAAATAAG 74038 29 100.0 37 ............................. CTTTTAGCTTTTTTGTTAGTGTTCTTTATTGCTGTTA 74104 29 100.0 38 ............................. CAAAAAGTCTTGAATAATCTTTCAGGTTATATTTTAAA 74171 29 100.0 36 ............................. CAATTGGAACTTTCTGCATCTGTGCGAGGTGTGTCT 74236 29 100.0 37 ............................. TGATACAAATACTTTTTCTTTAACTCCAAGTTCTTTT 74302 29 100.0 37 ............................. AGAGTGAAGTTTCATTAACTAAATATTAATGTCGTTT 74368 29 100.0 37 ............................. TTTATTACATTTTTACTTTCAAAACTTGTAGCCATAT 74434 29 100.0 38 ............................. AAAGAAGTACAAAAGAAGCTTGAAACAATGTATAATGG 74501 29 100.0 37 ............................. TTATTGGCTGAATTTGATGGTTTTATGGATGATACTG 74567 29 100.0 36 ............................. TAAATAGCGGGTCGACTTAATTCTAATATATCAAGA 74632 29 100.0 36 ............................. ATCAATACGATTCTTATCAGAAAGAGTAGAACGAGG 74697 29 100.0 38 ............................. TTCATTAAAATTACTAAAATCTAAACTAACCTTGTTAC 74764 29 100.0 37 ............................. GCAGTTATAAGAGCGATTTTAGAAAATAATGTAATTA 74830 29 100.0 37 ............................. ATGTTTTGAAAAATAACTTATTTTCTTAAACCACTCT 74896 29 100.0 37 ............................. TCTTTTATAGAAAAAGTCATTCATTCTTAGCCTTTTC 74962 29 100.0 37 ............................. TCATCATGGCAACTCGTAGGAATATAAATAGTGTTTG 75028 29 100.0 37 ............................. GAGAAAAATTTTTAGCTCGCTGGTACATGCAAAACTT 75094 29 100.0 37 ............................. TTTTCGGAGTAAATTCTTTTATTATTTCTTTTTCCTT 75160 29 100.0 37 ............................. TATTGTCTATATCGACCATGCTCCAATTCTTTTCAAA 75226 29 100.0 36 ............................. CTAAATCGGTTCTCTTCTTCACAAGCACGAAAGACC 75291 29 100.0 37 ............................. ATATAATGCAGCGTAATACTCGGCGCAGCATGATTAA 75357 29 100.0 36 ............................. CAAATATACAATTCCAGCTGCAAGACCTGCAACTGC 75422 29 100.0 37 ............................. ACTTTTTGTTTGAAAGAAAAAGGATATTTTGCAAGAG 75488 29 100.0 37 ............................. ATATCAATAGCAGGATTATCAACATTAGGAACTGTAA 75554 29 100.0 37 ............................. TATATTAATAGAAAAGGCGAGTTTAAATATGTGATAA 75620 29 100.0 38 ............................. GGTCTTACATTGGCTATAAGGTCACTTTCTACATTTTT 75687 29 100.0 33 ............................. TTTAGTTATTTTTATATATAACAGTTCTTTCGC 75749 29 96.6 36 ............................G CTTAATTTTTTAAGTTATTTGCAAGATATAAAACTA 75814 29 96.6 38 ............................G ATCTCTGCTCTCTTTTGCAAATTGAGAATCTTTTAATA 75881 29 96.6 35 ............................G TCTTTTTTAAGATCGTTTATATTATCCATTGCAGT 75945 29 96.6 38 ............................G ATATATACCATCTTTAGTTTTACTTTTCTTTTTACATG 76012 29 96.6 39 ............................G ATTGAAAGCAATCAAGTTTATCTTTCTTCTTATATAAAT 76080 29 96.6 37 ............................G GAAATTGTTAATGTTGTTACTACTCTTGCTGTTGCTA 76146 29 96.6 37 ............................G TTTTGAGTGTATGTTTCTTTTGTTTTATTATTTAAGA 76212 29 89.7 36 ......................GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 76277 29 79.3 35 ............TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAATCAGCC 76341 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ======================================= ================== 47 29 98.3 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAAGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : TAAAATACACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATTAAACAATCAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATGCTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGGTGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGAGTACA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 244786-245143 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUSU01000001.1 Clostridioides difficile strain CD30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 244786 29 100.0 38 ............................. CTCTTACGCTTTTTCAATCACTTTTTTCCTTGCTAAAA 244853 29 100.0 37 ............................. TGCGGTATATTGGAATTGAACAGGATGATTTAAACAA 244919 29 100.0 36 ............................. GATGTAACCGCACAGATATTCTGGCTAAAGAATCGT 244984 29 100.0 37 ............................. AGCAACTAGAGTTGATAAAATTAATTTAATAGGAATA 245050 29 96.6 36 ............................G AGTTTATGATTTTTCATTGCATATTCAATAAAAAAT 245115 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 98.9 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTATTTAAACTATGCTTGTTCAGGTAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCACTGTATATAGATTACATTTTTTCTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGATAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTATATGATAAGTGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATATGTGTAAGTATTGAAAATACTAAGTTTATTTGGGG # Right flank : GTTTTATAATTTTCTTTTAAGGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAGTCAAAAGGTAGTATAGAAATCTTATCACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTATATAATTACATATTTTTTCTGATTAAATAATGTGATGCTATTGTTATAATAGATACTAATGTTAATGATGTTATTGCAGTATCTAATCTTCTTATTTAATAAACTCATTTCTATATCTTCAAGTCCTATTAAATATTGATAAAATTTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAACTTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTATAAATTCCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : GTTTTATATTAACTATATGGAATGTAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2638-2147 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUSU01000023.1 Clostridioides difficile strain CD30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2637 29 100.0 37 ............................. GTTTTTGTATTTATCTCCCCTTTTTTCTTATCCTCTT 2571 29 100.0 38 ............................. GGGACGTAAGGAAGATCATAAGCAACTCCAAAAAGAGG 2504 29 100.0 36 ............................. TTAGAAAGTAGCCTCATTGTTTTTTCCAACTTTTTA 2439 29 100.0 38 ............................. ATGCAAAATCCCCAAATACTTTTAATAATGGAATTACA 2372 29 100.0 36 ............................. GGAGACAACTAATCTAGGTGGAAATAAAAAGAAAAA 2307 29 100.0 37 ............................. TAACATATTTTTCCAATAGATTTAGTTTTTTATTTAA 2241 29 89.7 37 ......T.........G...T........ ATGTATATCCCAGCAATACTTTTTAGTTTAGACACTA 2175 29 82.8 0 ......T.........G....C.TA.... | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 96.6 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAGTATTCTTAGGGAACAACAGGAGAGAGAAAATAAGTAAAATAAATAGATAAAGTACTTGGATATTATGTTGTTTCAAGTGTTTTATATGGTGAAAAGTGGTATAATAGAGATAGAAGTTTTGCAGTGAGCGATATTTGTGATAAAATATGGCTTAATACTTGAAATATAAGGCATTGAGAACGTATGATAAGTGTTATCAATTGCACTATTGGTAGCTCACTGCAAATTTAAGAGAGTTGTATATGTGTAGGTATTGGAAATACTAAGTTTATTTTGGG # Right flank : TAAAAATAATTAAAAAACACTTACTTAGGTAGGTGTTTTTTTAGTTGAAAGTAGGTGATTATAACGTAAAAAGTAATAAACAGGTAAAATATGTAAGTAATATATGATATAATATTTTTAGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGTATATGTATGGATAATTTTTTGATTAGCGTATTAGCTAGTTTAACAGCTAGTCTAATCGGTTACATAGTTTGTATATGTATCAAAAAAGTAAAAAGCCACTCCGGCCAGAGTGACTTTAGTTTTGAACTAAAGATTAAGTTCAAAAAGAAACACTAATTTACGAACTCCACTCTAGTCTTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTAGAAAAAATATTGCCTATAATATTTTTATAGTCAATAAAAAGATGAAATTTTTTATACACAATGGTGATAAATCTAGCTGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 4588-4363 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUSU01000023.1 Clostridioides difficile strain CD30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 4587 29 89.7 37 GC.....................G..... ATGAAAGATGTAGCTCTGGCAACGGGACTAATGGTAA 4521 29 100.0 36 ............................. GCCATACCTGCGTAATATATCGCATCAGCCACTTCT 4456 29 86.2 36 G..............T.......G....G GCCTTAAAGGCGTCATCTAAGTTTTTAGTAGTCTTT 4391 29 79.3 0 ....................AG.AA..CT | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 88.8 37 ATTTTATATTAACTAAGTGGTATTTAAAA # Left flank : AAGAAAAAGTAGATAAAAAATATCAAGAGAAGAATAAAGAGAAAGCAGAAACGAAAAAGCAAACATTAACTAGTGAAGAATTAAAGAAAAAAGTTGAGTCAATAATTTCATCACAGTATAAAGGAAACTATTATACAAATGATATACTGGATGCAGATGGTAGTTGTGTACTTAGTTTACAGGTTCAAAATGCAAGTTTTGACAACGAAAGCAGTTGTAAGGTATTTACTAAAGACTTAATTAACAAGTTGAAAGAATTTAGAATAGACTCAGCAGAGATATATTTTGTAGGTTCAAGCGGTCAAACAACATATCAAATTAACATAGATGATTTCTTGAAAGTTCAAGATAATATTGATAGCATAGACAATATGGAGTTTTTTTCTTTTAAAGATTTTAAAAATTAGAAACAAAATAGAGACATTTGCTTAAACAACATGTGTCTCTATTCTACCAAATTATGTTATAATAGTACTTAAGAAATATAATTTTATAGCATG # Right flank : AAATAGAAAAAAGGAAGCACTTGCTTTTTGGTAGGTGCTTTTGTTTTGCTCAAATTGGTCGGTTGAGTGAAATAATTAGAAAAAATTAGTAAAAACTCTTGAAAAGTGTCGCGATACAATGTATAATTATATTATCGCGATACAGAAAAGAGGTGAAAATTATTACTGATAGCAGTAGAGCAGATTACTTCAAGCAGAGACGACAGAATAAGAAAACTTTTAGTGTTCTACTAGATAGAGAGAAAGTAGAAAAAATTGAAGAACATTTAAAAAAGCAGAACAAGACTAAAACTATTTGGCTTGAAGAAAAGATTAATGAAGAGTTAGAAAAAGAGGAATAAAAAATAAGAGACGTTCTCCCCGACCAAAGATTGAACATCCCTTATTGACGTATATTATATACACTAACTATAGTATACGTCATTCCTTAAAAAAATTCAATTAAGGAGTGTAATATTATGAAAAATTTAATAGTAAAAGAGTTCAATGGAAGTCAAATT # Questionable array : NO Score: 3.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTAAGTGGTATTTAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:85.19%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 15005-15626 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUSU01000028.1 Clostridioides difficile strain CD30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 15005 29 100.0 36 ............................. TGTAAATGATGATGTTAAAAACATAATAGTTGATGA 15070 29 100.0 37 ............................. TCAACTAAATCTATTGTCGTTCCAGGTGGTACTGCTA 15136 29 100.0 37 ............................. ACACAAATTAAAGAGCTTACCAAAAATGCTATTGTAT 15202 29 100.0 37 ............................. CCAACTAACTCTTCATAATCCATACTCGTTAACTTTG 15268 29 100.0 37 ............................. ATAAGAGTGGTTTAAAAAAATAGTTCTTTAAATCAAT 15334 29 100.0 37 ............................. CAGTTAGAACTTTCGGCATCCGTGCGAGGTGTGTCTT 15400 29 100.0 37 ............................. GCGAGGGAAGTTTTTCAAAAGAATTGTATAGTTGAAA 15466 29 86.2 37 ......T.........G...T.......G TTGTTGAAGTCGTCGAATTAGAAAGTAGTTCAAAAGT 15532 29 82.8 37 ......T........AG...T.......G ATAGATGCTCCCCAACATAAAATACCTTCAAAGACAG 15598 29 86.2 0 ......T........AG...T........ | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 95.5 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ATACTAGGATAAAACCTACTTCCTAATGAAAGGAGGTGGGAAGTATGGACAACTTTTTACTTAGTATATTAGCTAGCTTGATAGCTAGTTTAATTGGATATATCGTTTGTAGATGTATCAAAAACGTAAAAAGCCACTCTACTCGTGGCAAGAGTAAAAGTGGCTGGGAACTTGATTTTAAAATAAAGTTCCGCAAATTTAAATAATTTATATTTTTTAAAATTATGAACTTCACTCTACCGCTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATATAAATAGTTTTGCAGTGAGCGATATTTGTGATAAAATATGGCTTAACACTTGAAATATAAGGTGTTAAGGGTGTATGATAAGTGTTATCATTTGCATTACTCATGGTTCACTGCAAATTTGAGATAGTTGTATATGTGTAGGTATTGGAAATACTAAGTTTATTTTGGG # Right flank : TACATTGTAGGTGGGTGGTGAAACACCACATACATTGTTTTATGTTCAAAACTAAATAGAAAAAAGGAAGCACTTACTTTTGGTAGGTGCTTTTGTTTTGCTCAAAATTGGTCGGTTGAGTAAAATAATTAGAAAAAATTGGTAAAAACCTATTGCTTTATTGTACGTACTATATTATAATTTAAGTACGGACGATAAAAAGAGAGGTGATAAGATGTCTAATAAATTAGGCAGACCACCAAAAGAAAATTCCAAAAAATTAAGATTTGAAGTTAGACTTAACCAAGAACAAGCTGATATATTGAATGAATGTGCTGAGAATCTTAAAATATCTAAAACAGATGTAGTAATTAGAGGGATTGAATTGGTGAAAGAGAAGCTTGACAAAAACAAATAAAAAACAGCCGCTGCACCGACCAAAGCACTTTCGACTGTTTCCCAAAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAAT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //