Array 1 36077-35865 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAR01000020.1 Lactobacillus crispatus strain NCK978 NODE_20_length_41717_cov_52.176420, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 36076 28 100.0 33 ............................ AAGGTAAGCAACAATGATTTTGGACGTGATTTA 36015 28 100.0 33 ............................ TGAACCAGATCAGTAGTAGCAGGTGTTCCGTTA 35954 28 100.0 34 ............................ GTCACCCATGCGGGCTTCACCTTTGGAGATGTGG 35892 28 96.4 0 ................T........... | ========== ====== ====== ====== ============================ ================================== ================== 4 28 99.1 34 GGATCACCTCCACATACGTGGAGAAAAC # Left flank : TTGTAGTGTATTATTTGCCTGACTAAGCTCTGACATAATTTCTTTGAAGCATTCAGGCTTTAATTTAGCTTTTTGTTGTTCGAAGGCTGAAGCGGTCATTCTAGAATTCATGTCAGGAAAAGCATGAAAAATTTCCGAATTCAGGCTGCCAGCTCCCATGTTAAGAATTAACTTAATCAAATCAGTGGAATTGAGCTTACGACAGCGAGTAAAAGCTTGATCAGATACAGAGAAATCGTGAATGTTGTCAGCGATTTTATTGATAATACTATCCATCAGTTTTAAAATATTTGAGTGAAGGGATTTCATAAGAGGCACAGCTTTCTATGAAAGACCAGATAATATGACGAAAGTGAGCAGAAGGGTAAATAAACTCTGCTCACTTTTTATTTTAAAAAGAAAAAAGACCGAATCAAAATGATTCGATCTTTAAAAGCTGTCGATATAATGTCAATGTCTTAACTTAATGACATTGCAATTTAGGATTTGCTTTTTGTTAT # Right flank : ACTAAAAGAATCCCATCGTTAAGCCATTTAGATTTAATAAAAAGCTGAAATTTATTCAGTTTATATTTTATACAACAATAATTATACCAGTGCATCCCTTATCCTTCACTCCAATAAACAAATCCAAACTAAAAAAGTCCCAAACGGGACTTTCTTCACACATCTAATCTCTCAAAGCACGATTGCCAATATCATGGCGGTAGAAGCAATCTGGCAGATCAAGCTTACTCAAATAAGAATACACATTATCCTGCGCCTGGACTAAATTGTCAGCTTCCGAAATCACCATGAACAGGCGGCCGCCATCACCTATCAGATTATCCAAATCACCTTTGACGTTGGCGTAATCGATATAAGTATTGCTGCCATCAGGCAACTTGCCGATCTTGACGTTAGGTGCCGGATGCGTTGGATAACCTTGGCTGCAGACAACCACGCCCAAGATAGAATTATCATTTTCTTCAATCTCAGGCAATTTTTCATGATTTACTGCTGCGTCA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCTCCACATACGTGGAGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 1029-756 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAR01000053.1 Lactobacillus crispatus strain NCK978 NODE_53_length_1552_cov_11.427522, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1028 29 96.6 32 .............G............... AATATCATCAAGCTGGCTAATTACTGATTGTT 967 29 89.7 32 T............G..............C CATCACAAAACATAGTGAAGCAGTTACACCCA 906 29 100.0 32 ............................. GTTTCCACATACCTTGCATTCAGCTGATTTAA 845 29 100.0 32 ............................. ATCTCTAGTAGCTCCTACAAAAACATCAATAT 784 29 89.7 0 .......................AT.G.. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GACGATTATTAGTAATGGTTAGTTCATTTTTGCTTTCACCAATTAGTTCACAAACAGTAGAAGTAGACTTGCTTACATCAATTCCAAAAGTAACTTGCATAATAAAAACCTCCAAAACTTAGTAGTAAAACGTATTTACTTAAGAAATCAGATCTAATTTTCTAAACTCGACATCTAGTGTCCACATTCTTCGAAGAGACTATTGAAAACTTAAGTAAAACTGCCAGTTTATTATGCGACATCAAGTGTCTAAAGACCTCAGGGCATATCGTTTTACTACTACTTTAATTCTACAAAAGAATAAAAATAGTGAATCAATTATCCCGTCGGATAACTAATTCACTATTTAGCTTAGAATGTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : ATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGCT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : TATTCTCCACGTGTGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.10,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 78975-79554 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAR01000006.1 Lactobacillus crispatus strain NCK978 NODE_6_length_85609_cov_31.501917, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 78975 29 100.0 32 ............................. GTGCTGGGGATTGGCGGTAAGACTGTAGCCAA 79036 29 100.0 33 ............................. TTGAAGAATGTTAACGCACAATTGCAACAACAA 79098 29 100.0 32 ............................. ATATTTGCTATTAAGCTACTACGACAATATTG 79159 29 96.6 32 ............................C AAGCCGGCACACTTGACTATCGTATTACTTCA 79220 29 96.6 32 ............................C TACAATGATGAAATACATTCAGCAAGGAAAAA 79281 29 100.0 32 ............................. TAACAATTCTTATATTTCTTTATTATTTAAAA 79342 29 100.0 32 ............................. GAATATGGATCCTCGCTAGCTTCTGTGTCGTC 79403 29 96.6 32 ............................C ATGGACAGTGCTCTCGTTGGGGCAGTTGCTAC 79464 29 100.0 32 ............................. TTGGTGCAGTGAATGAGAAATATGGGAATGCT 79525 29 82.8 0 ...........AC....T......T.A.. | A [79546] ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.3 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATAGGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGTAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTTGAGCGCACAGATAAATAGCCTATAAACGCTGGTATGCCAGCATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAATTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTAAACATTGGGAAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3507-2682 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAR01000012.1 Lactobacillus crispatus strain NCK978 NODE_12_length_61430_cov_46.811242, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3506 29 100.0 32 ............................. TAGAGAAGTTTGGACTTTAAACGACTTAAATT 3445 29 100.0 32 ............................. TGTGCTACCTTTTCCCATGACAAAATAAGTCG 3384 29 100.0 33 ............................. CGTGGCAAAATGATAGCCATGCAGGTACATATG 3322 29 100.0 32 ............................. AAACCGTTATGATGTTAGGTTTTGCCTGAAAC 3261 29 96.6 33 G............................ CTTCGTTATGCCAACCGCTTTTTTTGCTGGGCT 3199 29 100.0 32 ............................. GCTGGCAAACAGACGACTTAGCAGGGCGTTTG 3138 29 100.0 32 ............................. ATTTCATAAATAGTCATAGCCTAATCCTCCTT 3077 29 100.0 32 ............................. GAAGCCACAAGTGCAGATGTATGAGATGGATT 3016 29 100.0 32 ............................. CAGAGATTGGGCATTCTGGCTTAGAGATATCC 2955 29 100.0 32 ............................. TAAGCAAGAAACAGGCTTCATTCCGCAAGATT 2894 29 100.0 32 ............................. CCCCTTGCGTTACCTAAGTAGTAGCGACCGGC 2833 29 100.0 32 ............................. ATATGGAGGACATATCAACTCCTTAAAATTTT 2772 29 100.0 33 ............................. GTCACCCATGCGGGCTTCACCTTTGGAGATGTG 2710 29 93.1 0 G................T........... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.3 32 AGGATCACCTCCACATACGTGGAGAAAAC # Left flank : TTCTTGAATATAAGGCATTTGTTCGAGCAACTCTTCTGGAGTTTTCGCACGTCCACCTTTGTATTCGCCGTACATTTTTGTTCTAAAAGTGACTTTTCCTGCATCAAAAGCTACCAATACGTGGGTCGGATCAACGTCTTTTAAAAGGACATCGAGCATGTTCTTAAAAGCGTAAATGGCATTGGTATGCAGGCCGTCTGGACTCTTGAAAGATTCTAGTTGACGATAAAGAGCGTAAAAGGCTCTGAAAGCTACAGAGTTACCATCGATTAGAAGTAATTTTTTATCTGCCATTTTATTCCCCTTTTATAAAAATTGTTCTCTATACTTACTTATCTATTTTACCAGTTTCAAGGGTAATCTTTTAATAGGAAGTTTAATGGAAAAGAAAAAAGCTCCGATTATAGGACTTTTGCTTGTGATTTTTCTTTCACTGCGTCAATTTAGCTCCACTTTTGTGAAGAAAATAAAGTTTCAAATCGTGTACCAAAGTTATTGTA # Right flank : TTTATCGAGGTTAGGACATGCTCTCTATACAAAACTAGACAAACTCGCTTTTCTAGTGAGTTATGGAGTCTTGTTAAAAGCGCCCGACTTTAGTCGGGCGTAGGTTGACGGTGTTCAGTTTTTTATGAAATTGTAACGTTATCTTAAAAATTGGTCTAAAATAGTGTTATATTTATGACGATAAGTCATAAAATTACGAAACTGTCAAATCTTTTGTGTAAATAGATCTTTCTCATAGATCGATTTTTTATTCTTTATTTAGTCAAAGTAAGATTCTAAGGTGTCCTGAACCTGACCAAAGCCCGGTCCTAAACAGCCAACTTCAGTTCCTGAACCAAATAAACTAACATCGGAGCCCAACAAACCTAGTGTGAAAACTAATAATGACAATCACGGTAAATCAAAGAAAAATTCAGGTACTACAAAGCATTCAAGCAGAAACACGAATAATAATCCAAAGGCTAGAAGAAACGTAAAACGTCAATATAACTCAAATAATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGATCACCTCCACATACGTGGAGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //