Array 1 2523403-2523116 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP071184.1 Alicyclobacillus ferrooxydans strain ALEF1 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence          	Spacer_Sequence             	Insertion/Deletion
==========	======	======	======	=========================	============================	==================
   2523402	    25	 100.0	    27	.........................	CAGTGCTCAGCCAGCCACTCCGACGAA 	
   2523350	    25	  96.0	    28	.....................T...	AAACGCCTGTTTTGCCGATTTTGATGCT	
   2523297	    25	  96.0	    27	.....................T...	CGGCGGTCAGCCACCCGATTTGGAGGT 	
   2523245	    25	 100.0	    27	.........................	CAATGCTCAGCCAGCCACTCCGACGAA 	
   2523193	    25	  96.0	    28	.....................T...	AAACGCCTGTTTTGCCGATTTTGATGCT	
   2523140	    25	 100.0	     0	.........................	|                           	
==========	======	======	======	=========================	============================	==================
         6	    25	  98.0	    28	CCCTTACGCACCCACGGTGCGCAAG	                            	       

# Left flank :   GCGGTTGACATAGCGCGTCCACAGCGCGCTATTCGCCGGGCTGACACCGGGTTTAACCGATAGCGCGTCGAGAACGCGCTATTTGCGAGTCAGGCGTGTAGATTGAGTGGAAATAACGCGCTGTGAGCGCGTTATCACCGCTGGCGGTTGACATAGCGCGTCCACAGCGCGCTATTCGCCGGGCTGTGACCGGGTTTGACCGATAACGCGTCGAGAACGCGCTATTTGCGGGCCAGCGGTGTAGATTGAGTGGAAATAACGCGCTGTGAGCGCGTTATCACCGCTGGCGGTTGACATAGCGCGTCCGCAGCGCGCTATTCGCCGGGCTGACACCGGGTTTAACCGATAACGCGTCGAGAACGCGCTATTTGCGAGCCAGCGGTGTAGATTGAGTGGAAATAACGCGCTGTGAGAGACTATCGATTAACTCGACAGGTCACGAGCACGGCACTTTTTCATCCACCTTGCCTAAGCCGTACCCAGCCAACCGATCCGGTGGT
# Right flank :  CACCTACAAGTTAATCGACAGTCTCTGTGAGCGCGTTATCACCGCTGGCGGTTGACATAGCGCGTCCGCAGCGCGCTATTCGCCGGGCTGACACCGGGTTTAACCGATAACGCGTCGAGAACGCGCTATTTGCGGGCCAGCGGTGTAGATTGAGTGGAAATAACGCGCTCGCAGAGACTGTCGATTAACTACGCGAGATGCCGTTCGCCATTTTCGAAGATTATATCTGTATTACTCGTTATTTCTACGTAAATCTCGTGTTTTCTGGTATAATTGAGGTATCCGAGATTACGGGGAGTTGGAGAAATGAACGGGGTAAAGTACAAGAACTTTGAGCAAGCCTCCTTCGAGGACATCATGGTGTATTCAGTCATACCACCTCATCCATTCTGGGATGCAGTGGCGAAATACATTGATTTCTCGTTCGCGGATAAGCTCTGTGCTCCCTTGTACTCACCCATCGGCCAACACCCGTATGCCCCGTCCTTGAAACTTAAAAT

# Questionable array : NO	 Score: 2.68
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.07, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCCTTACGCACCCACGGTGCGCAAG
# Alternate repeat :   CCCTTACGCACCCACGGTGCGTAAG

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-7.00,-6.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,0.78   Confidence: MEDIUM] 

# Array family : NA
//